BLASTX nr result
ID: Coptis24_contig00008000
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008000
(1763 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002533875.1| DNA-directed RNA polymerase II, putative [Ri... 701 0.0
ref|XP_002285818.1| PREDICTED: uncharacterized protein LOC100260... 692 0.0
ref|XP_003544778.1| PREDICTED: uncharacterized protein LOC100776... 674 0.0
ref|XP_002302270.1| predicted protein [Populus trichocarpa] gi|2... 672 0.0
ref|XP_003544777.1| PREDICTED: uncharacterized protein LOC100776... 668 0.0
>ref|XP_002533875.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223526176|gb|EEF28506.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 478
Score = 701 bits (1809), Expect = 0.0
Identities = 348/478 (72%), Positives = 398/478 (83%), Gaps = 2/478 (0%)
Frame = -3
Query: 1758 MKRKSAKCSLCEKSNLASICAVCVDSRLIEYKNSLKSLRNVRDSCYSRLTAQLVAKSKAD 1579
M +KS+ C++CE SN ASIC VCV+ RL EY LKSL++ RD YSRL+ LVAK KAD
Sbjct: 1 MNKKSSCCAICENSNRASICTVCVNYRLNEYSTLLKSLKSRRDLLYSRLSEVLVAKGKAD 60
Query: 1578 DQLSWRVHQNQKLSKLREKLNLTEKQLSQGKAKLDKMSIDLKFRYGLLESAMLTLKKNRV 1399
DQL+WRVHQN+KL+ LREKL +++QL Q KAK +KMS DL +YGLLES+ L+KNRV
Sbjct: 61 DQLNWRVHQNEKLANLREKLLRSKEQLIQAKAKTEKMSSDLNAKYGLLESSRSALEKNRV 120
Query: 1398 EQLEKFYPNLICTQSLGHMAITSERLHKQSVVIKQICKLFPQRRVVVDGDRKDGSNGQYD 1219
+QLEK++PNLICTQSLGHMAITSE LH SV +KQICKLFPQRRV+V+G++KDGS+GQYD
Sbjct: 121 DQLEKYFPNLICTQSLGHMAITSELLHNLSVTVKQICKLFPQRRVIVEGEKKDGSSGQYD 180
Query: 1218 QICNARLPRGLDPHSVPSEELAASLGYMVQLLNLVVRALAAPVLHNSGFAGSCSRIWQRD 1039
QICNARLPRGLDPHS+PSEELAASLGYMVQLLNLVV LAAP LHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRGLDPHSIPSEELAASLGYMVQLLNLVVHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 1038 SYWDARPSSRSNEFPLFIPRQNSCTRGGENSWSDRSSSSFGVASMESEKKPTLDS--TGS 865
SYW+ARPSSRSNE+PLFIPRQ C+ GENSW+DRSSS+FGVASMESE++ LDS + S
Sbjct: 241 SYWNARPSSRSNEYPLFIPRQRYCSTSGENSWTDRSSSNFGVASMESERRARLDSSRSSS 300
Query: 864 FNCNSASPHSVETHKDLQKGISLLKKSVACITAYCYNSLCLDAPSEASTFEAFAKLLGTL 685
FN NSASPHSVETHKDLQKGISL+KKSVAC+TAY YN LCLD P+EASTFEAFAKLL TL
Sbjct: 301 FNYNSASPHSVETHKDLQKGISLMKKSVACVTAYGYNLLCLDVPAEASTFEAFAKLLATL 360
Query: 684 SSSKEVRSVFSLKIASSRSCKQAQKLNKXXXXXXXXXXXXXXXXXXXXXXLRQNAGDNNL 505
SSSKEVRSVFSLK+A SRSCKQ QKLNK L +N DNNL
Sbjct: 361 SSSKEVRSVFSLKMACSRSCKQVQKLNKSVWNVNSIISSSTLMESAHAPHLTKNINDNNL 420
Query: 504 SNSAVSFLYTNEMSDVGKSESLVEGWDLVEHPTFPPPPSQSEDIEHWTRAMFVDATKR 331
NSA SFL+ NE+SD GK+ESL++GWDLVEHPTFPPPPSQ+ED+EHWTRAMF+DATK+
Sbjct: 421 RNSATSFLFANEISDAGKNESLIDGWDLVEHPTFPPPPSQTEDVEHWTRAMFIDATKK 478
>ref|XP_002285818.1| PREDICTED: uncharacterized protein LOC100260778 [Vitis vinifera]
gi|302141899|emb|CBI19102.3| unnamed protein product
[Vitis vinifera]
Length = 478
Score = 692 bits (1785), Expect = 0.0
Identities = 348/478 (72%), Positives = 396/478 (82%), Gaps = 2/478 (0%)
Frame = -3
Query: 1758 MKRKSAKCSLCEKSNLASICAVCVDSRLIEYKNSLKSLRNVRDSCYSRLTAQLVAKSKAD 1579
M RK++ CS+CEKSNLASICAVCV+ RL EY SLKS + RDS Y RL+ LVAK KAD
Sbjct: 1 MTRKTSSCSICEKSNLASICAVCVNYRLNEYNTSLKSSKGRRDSLYLRLSEVLVAKGKAD 60
Query: 1578 DQLSWRVHQNQKLSKLREKLNLTEKQLSQGKAKLDKMSIDLKFRYGLLESAMLTLKKNRV 1399
DQ++WRV QN+KL++LREKL ++Q GKAK++KMS DLK +YGLLESAM L+KNRV
Sbjct: 61 DQINWRVLQNEKLARLREKLRHRKEQYLDGKAKVEKMSNDLKLKYGLLESAMSMLEKNRV 120
Query: 1398 EQLEKFYPNLICTQSLGHMAITSERLHKQSVVIKQICKLFPQRRVVVDGDRKDGSNGQYD 1219
EQLEKFYPNLICTQ+LG MAITSER HKQSVVIKQICKLFPQRRV +DG++KDGS+ YD
Sbjct: 121 EQLEKFYPNLICTQNLGLMAITSERFHKQSVVIKQICKLFPQRRVNIDGEKKDGSSRPYD 180
Query: 1218 QICNARLPRGLDPHSVPSEELAASLGYMVQLLNLVVRALAAPVLHNSGFAGSCSRIWQRD 1039
QICN RLPR LDPHSVPS+ELAASLGYMVQLLNLVV LAAP LHNSGFAGSCSRIWQR+
Sbjct: 181 QICNVRLPRVLDPHSVPSDELAASLGYMVQLLNLVVYNLAAPALHNSGFAGSCSRIWQRE 240
Query: 1038 SYWDARPSSRSNEFPLFIPRQNSCTRGGENSWSDRSSSSFGVASMESEKKPTLDSTG--S 865
SYW+ RPSSRSNE+PLFIPRQN C+ GENSWS+RSSS+FG+ASMES++KP L+S+G S
Sbjct: 241 SYWNPRPSSRSNEYPLFIPRQNLCSTNGENSWSERSSSNFGIASMESDRKPRLESSGSSS 300
Query: 864 FNCNSASPHSVETHKDLQKGISLLKKSVACITAYCYNSLCLDAPSEASTFEAFAKLLGTL 685
FN +SAS HSVETHKDLQKGISLLKKSVAC+T YCY+SLCLD P+EASTFEAFAKLL L
Sbjct: 301 FNYSSASLHSVETHKDLQKGISLLKKSVACLTTYCYSSLCLDVPTEASTFEAFAKLLAIL 360
Query: 684 SSSKEVRSVFSLKIASSRSCKQAQKLNKXXXXXXXXXXXXXXXXXXXXXXLRQNAGDNNL 505
SSSKEVRSVFSLK+A SRSCKQ Q+LNK + +N DNNL
Sbjct: 361 SSSKEVRSVFSLKMACSRSCKQVQQLNKSIWNMNSAISSSTLLESAHTLPMTRNIFDNNL 420
Query: 504 SNSAVSFLYTNEMSDVGKSESLVEGWDLVEHPTFPPPPSQSEDIEHWTRAMFVDATKR 331
NSA SFLYT EMSD+GK+ESL+E WDLVEH FPPPPSQ+EDIEHWTRAM +DATK+
Sbjct: 421 PNSAASFLYTTEMSDIGKNESLIEEWDLVEHANFPPPPSQTEDIEHWTRAMIIDATKK 478
>ref|XP_003544778.1| PREDICTED: uncharacterized protein LOC100776426 isoform 2 [Glycine
max]
Length = 477
Score = 674 bits (1740), Expect = 0.0
Identities = 333/475 (70%), Positives = 394/475 (82%), Gaps = 2/475 (0%)
Frame = -3
Query: 1758 MKRKSAKCSLCEKSNLASICAVCVDSRLIEYKNSLKSLRNVRDSCYSRLTAQLVAKSKAD 1579
M RK++ C++CE SN ASIC++CV+ RL EY SLK L++ RDS Y +L+ LV K K D
Sbjct: 1 MARKTSNCAICENSNQASICSICVNYRLNEYNTSLKLLKDRRDSLYLKLSEVLVRKGKGD 60
Query: 1578 DQLSWRVHQNQKLSKLREKLNLTEKQLSQGKAKLDKMSIDLKFRYGLLESAMLTLKKNRV 1399
DQ +WRV Q++KL++L+EKL +++Q++QG+AK++ MS DLK +YGLLESA+ TL+KNRV
Sbjct: 61 DQANWRVLQHEKLARLKEKLRQSKEQVTQGRAKIETMSADLKLKYGLLESALSTLEKNRV 120
Query: 1398 EQLEKFYPNLICTQSLGHMAITSERLHKQSVVIKQICKLFPQRRVVVDGDRKDGSNGQYD 1219
EQLEKFYPNLICTQSLGH+AITSE LHK+SVVIKQICKLFPQRRVV++G+R+DG +GQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSELLHKESVVIKQICKLFPQRRVVIEGERRDGCSGQYD 180
Query: 1218 QICNARLPRGLDPHSVPSEELAASLGYMVQLLNLVVRALAAPVLHNSGFAGSCSRIWQRD 1039
QICNARLPR LDPHSVPSEEL+ SLGYMVQLLNLV+ LAAP LHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSTSLGYMVQLLNLVIHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 1038 SYWDARPSSRSNEFPLFIPRQNSCTRGGENSWSDRSSSSFGVASMESEKKPTLDSTG--S 865
SYWDARPSSRSNE+PLFIPRQN C+ GENSWS+RSSS+FGVAS+ESE++ LDS+G S
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTDGENSWSERSSSNFGVASVESERRHRLDSSGSTS 300
Query: 864 FNCNSASPHSVETHKDLQKGISLLKKSVACITAYCYNSLCLDAPSEASTFEAFAKLLGTL 685
FN + AS HSV+THKDLQKGISLLKKSV CITAYCYNSLCLD PSEASTFEAFAKLL TL
Sbjct: 301 FNYSLASSHSVQTHKDLQKGISLLKKSVVCITAYCYNSLCLDVPSEASTFEAFAKLLATL 360
Query: 684 SSSKEVRSVFSLKIASSRSCKQAQKLNKXXXXXXXXXXXXXXXXXXXXXXLRQNAGDNNL 505
+SSKEVRSVFSLK+A SR+CKQ Q+LNK +N +N L
Sbjct: 361 ASSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSAISSTTLLESAHSVPTTKNLIENYL 420
Query: 504 SNSAVSFLYTNEMSDVGKSESLVEGWDLVEHPTFPPPPSQSEDIEHWTRAMFVDA 340
+S SFLY ++SD GK+E L+EGWD+VEHPTFPPPPSQSED+EHWTRAMF+DA
Sbjct: 421 PSSTGSFLYAADLSD-GKNECLIEGWDIVEHPTFPPPPSQSEDVEHWTRAMFIDA 474
>ref|XP_002302270.1| predicted protein [Populus trichocarpa] gi|222843996|gb|EEE81543.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 672 bits (1735), Expect = 0.0
Identities = 340/478 (71%), Positives = 389/478 (81%), Gaps = 2/478 (0%)
Frame = -3
Query: 1758 MKRKSAKCSLCEKSNLASICAVCVDSRLIEYKNSLKSLRNVRDSCYSRLTAQLVAKSKAD 1579
M +KS+ C++CE SN ASIC +CV+ RL EY LKSL + RDS YS+L+ L+AK KAD
Sbjct: 1 MNKKSSCCAICENSNRASICPICVNYRLNEYGTLLKSLNSRRDSLYSKLSVVLIAKGKAD 60
Query: 1578 DQLSWRVHQNQKLSKLREKLNLTEKQLSQGKAKLDKMSIDLKFRYGLLESAMLTLKKNRV 1399
DQ +WRV QN+KL+ REKL+ ++QL+QGKAK++K+S DLK + G+LESA L+KNR+
Sbjct: 61 DQFNWRVQQNEKLASSREKLHRNKEQLAQGKAKVEKLSQDLKKKNGMLESARNVLEKNRM 120
Query: 1398 EQLEKFYPNLICTQSLGHMAITSERLHKQSVVIKQICKLFPQRRVVVDGDRKDGSNGQYD 1219
EQLEKFYPNLICTQSLGHMAITSE LHKQSVVIKQICKLFPQRRV VDG+R +GQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHMAITSELLHKQSVVIKQICKLFPQRRVNVDGER--NFSGQYD 178
Query: 1218 QICNARLPRGLDPHSVPSEELAASLGYMVQLLNLVVRALAAPVLHNSGFAGSCSRIWQRD 1039
QICNARLPRGLDPHSV SEELAASLGYMVQLLNLV LAAP LHN+GFAGSCSRIWQRD
Sbjct: 179 QICNARLPRGLDPHSVSSEELAASLGYMVQLLNLVAHNLAAPTLHNAGFAGSCSRIWQRD 238
Query: 1038 SYWDARPSSRSNEFPLFIPRQNSCTRGGENSWSDRSSSSFGVASMESEKKPTLDST--GS 865
SYW+A PSSRSNE+PLFIPRQN C+ ENSW+D+SSS+FGVASMESE++P LDST S
Sbjct: 239 SYWNACPSSRSNEYPLFIPRQNYCSTSSENSWTDKSSSNFGVASMESERRPHLDSTRSNS 298
Query: 864 FNCNSASPHSVETHKDLQKGISLLKKSVACITAYCYNSLCLDAPSEASTFEAFAKLLGTL 685
FN +S SPHSVETHKDLQKG+SLLKKSVAC+TAYCYN LCLD PS+ STFEAFAKLL TL
Sbjct: 299 FNYSSVSPHSVETHKDLQKGVSLLKKSVACVTAYCYNLLCLDVPSDTSTFEAFAKLLSTL 358
Query: 684 SSSKEVRSVFSLKIASSRSCKQAQKLNKXXXXXXXXXXXXXXXXXXXXXXLRQNAGDNNL 505
SSSKEVRSVF+LK+A SRSCKQ QKLNK L +N DNNL
Sbjct: 359 SSSKEVRSVFNLKMACSRSCKQVQKLNKSVWNVNSAISSSALLESAHALQLMKNTSDNNL 418
Query: 504 SNSAVSFLYTNEMSDVGKSESLVEGWDLVEHPTFPPPPSQSEDIEHWTRAMFVDATKR 331
NSA SFL+ +SD GK+ES ++GWDLVEHPTFPPPPSQ EDIEHWTRAMF+DATK+
Sbjct: 419 PNSAASFLFATGISD-GKNESFIDGWDLVEHPTFPPPPSQVEDIEHWTRAMFIDATKK 475
>ref|XP_003544777.1| PREDICTED: uncharacterized protein LOC100776426 isoform 1 [Glycine
max]
Length = 475
Score = 668 bits (1723), Expect = 0.0
Identities = 332/475 (69%), Positives = 393/475 (82%), Gaps = 2/475 (0%)
Frame = -3
Query: 1758 MKRKSAKCSLCEKSNLASICAVCVDSRLIEYKNSLKSLRNVRDSCYSRLTAQLVAKSKAD 1579
M RK++ C++CE SN ASIC++CV+ RL EY SLK L++ RDS Y +L+ LV K K D
Sbjct: 1 MARKTSNCAICENSNQASICSICVNYRLNEYNTSLKLLKDRRDSLYLKLSEVLVRKGKGD 60
Query: 1578 DQLSWRVHQNQKLSKLREKLNLTEKQLSQGKAKLDKMSIDLKFRYGLLESAMLTLKKNRV 1399
DQ +WRV Q++KL++L+EKL +++Q++QG+AK++ MS DLK +YGLLESA+ TL+KNRV
Sbjct: 61 DQANWRVLQHEKLARLKEKLRQSKEQVTQGRAKIETMSADLKLKYGLLESALSTLEKNRV 120
Query: 1398 EQLEKFYPNLICTQSLGHMAITSERLHKQSVVIKQICKLFPQRRVVVDGDRKDGSNGQYD 1219
EQLEKFYPNLICTQSLGH+AITSE LHK+SVVIKQICKLFPQRRVV++G+R+DG +GQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSELLHKESVVIKQICKLFPQRRVVIEGERRDGCSGQYD 180
Query: 1218 QICNARLPRGLDPHSVPSEELAASLGYMVQLLNLVVRALAAPVLHNSGFAGSCSRIWQRD 1039
QICNARLPR LDPHSVPSEEL+ SLGYMVQLLNLV+ LAAP LHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSTSLGYMVQLLNLVIHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 1038 SYWDARPSSRSNEFPLFIPRQNSCTRGGENSWSDRSSSSFGVASMESEKKPTLDSTG--S 865
SYWDARPSSRSNE+PLFIPRQN C+ GENSWS+RSSS+FGVAS+ESE++ LDS+G S
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTDGENSWSERSSSNFGVASVESERRHRLDSSGSTS 300
Query: 864 FNCNSASPHSVETHKDLQKGISLLKKSVACITAYCYNSLCLDAPSEASTFEAFAKLLGTL 685
FN + AS HSV+THKDLQKGISLLKKSV CITAYCYNSLCLD PSEASTFEAFAKLL TL
Sbjct: 301 FNYSLASSHSVQTHKDLQKGISLLKKSVVCITAYCYNSLCLDVPSEASTFEAFAKLLATL 360
Query: 684 SSSKEVRSVFSLKIASSRSCKQAQKLNKXXXXXXXXXXXXXXXXXXXXXXLRQNAGDNNL 505
+SSKEVRSVFSLK+A SR+CKQ Q+LNK + +N L
Sbjct: 361 ASSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSAISSTTLLESAHSVPTTRI--ENYL 418
Query: 504 SNSAVSFLYTNEMSDVGKSESLVEGWDLVEHPTFPPPPSQSEDIEHWTRAMFVDA 340
+S SFLY ++SD GK+E L+EGWD+VEHPTFPPPPSQSED+EHWTRAMF+DA
Sbjct: 419 PSSTGSFLYAADLSD-GKNECLIEGWDIVEHPTFPPPPSQSEDVEHWTRAMFIDA 472