BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007950
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326280.1| predicted protein [Populus trichocarpa] gi|2...   321   1e-85
ref|XP_002516976.1| conserved hypothetical protein [Ricinus comm...   315   6e-84
ref|XP_002279553.1| PREDICTED: putative mediator of RNA polymera...   312   5e-83
ref|XP_004141069.1| PREDICTED: mediator of RNA polymerase II tra...   310   2e-82
emb|CBI27822.3| unnamed protein product [Vitis vinifera]              308   1e-81

>ref|XP_002326280.1| predicted protein [Populus trichocarpa] gi|222833473|gb|EEE71950.1|
           predicted protein [Populus trichocarpa]
          Length = 221

 Score =  321 bits (822), Expect = 1e-85
 Identities = 149/213 (69%), Positives = 181/213 (84%)
 Frame = -2

Query: 786 MPIKWVLYWQANVGATVNTQILTEISQCVETINGSKGGRWKATLNYYKANTRDQSVANPP 607
           MP+KWVL+WQ N G TVNTQIL E++QCVE+ING K GRWKAT+ YYK   RDQS A  P
Sbjct: 1   MPLKWVLHWQPNAGTTVNTQILNEVTQCVESINGVKEGRWKATVTYYKPILRDQSQA--P 58

Query: 606 EFPRDLMGISLQEQPSKYYFIIRSQRIVLEADTLVQMIMEKLQSYRSRISVNFEGIQYQL 427
           E PRD +GISL EQP+KYYFIIR QRIVLEAD+ +Q IMEKLQSY+SR+++ FEG QYQL
Sbjct: 59  ELPRDFLGISLPEQPNKYYFIIRGQRIVLEADSSIQTIMEKLQSYKSRVALYFEGFQYQL 118

Query: 426 GDFQLRIGKVVATNADSLRGIVLEMEYLPISSVEKSRLIMEEFLDMWQEIVSKRSLPGRL 247
           GDFQLR+GKV  T++D+LRGI++E+EYLP+SS++KSR +MEEF+D+WQE +SKRSLPG  
Sbjct: 119 GDFQLRVGKVTPTHSDNLRGIIMEVEYLPLSSIDKSRQVMEEFVDIWQEAISKRSLPGHF 178

Query: 246 MHIEPNFAEYGLADHYTPQHTVVQYATVMTHLL 148
           MH+EPNF EYGL+DHY+ QHT VQYATVM  L+
Sbjct: 179 MHMEPNFVEYGLSDHYSSQHTAVQYATVMAQLI 211


>ref|XP_002516976.1| conserved hypothetical protein [Ricinus communis]
           gi|223544064|gb|EEF45590.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 221

 Score =  315 bits (808), Expect = 6e-84
 Identities = 148/213 (69%), Positives = 181/213 (84%)
 Frame = -2

Query: 786 MPIKWVLYWQANVGATVNTQILTEISQCVETINGSKGGRWKATLNYYKANTRDQSVANPP 607
           MP+KWVL+WQ N G TVNTQIL E+SQCVE+ING K GRWKA L  YK   RDQS+   P
Sbjct: 1   MPLKWVLHWQPNAGTTVNTQILNEVSQCVESINGVKEGRWKAALTSYKPMLRDQSLT--P 58

Query: 606 EFPRDLMGISLQEQPSKYYFIIRSQRIVLEADTLVQMIMEKLQSYRSRISVNFEGIQYQL 427
           EFPRD +GISL EQP+KYYF+IR QR+V+EAD+ +Q IMEKLQSY+SR+++ FEG QYQL
Sbjct: 59  EFPRDFLGISLPEQPNKYYFMIRGQRLVVEADSSIQTIMEKLQSYKSRVALLFEGFQYQL 118

Query: 426 GDFQLRIGKVVATNADSLRGIVLEMEYLPISSVEKSRLIMEEFLDMWQEIVSKRSLPGRL 247
           GDFQLR+GKVV  ++++LRGIV+E+EYLPISS+EK+R IMEEF+D+WQE +SKRSLPG+ 
Sbjct: 119 GDFQLRVGKVVPNHSENLRGIVMEVEYLPISSIEKARPIMEEFVDIWQEAISKRSLPGQF 178

Query: 246 MHIEPNFAEYGLADHYTPQHTVVQYATVMTHLL 148
           MHIE NFA+YGL DHYTPQHT +QYATV+  L+
Sbjct: 179 MHIETNFADYGLFDHYTPQHTALQYATVIAQLI 211


>ref|XP_002279553.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 20-like [Vitis vinifera]
          Length = 222

 Score =  312 bits (800), Expect = 5e-83
 Identities = 145/215 (67%), Positives = 182/215 (84%)
 Frame = -2

Query: 786 MPIKWVLYWQANVGATVNTQILTEISQCVETINGSKGGRWKATLNYYKANTRDQSVANPP 607
           MP+KWV +WQ N G TVN+Q++ E+SQCVE+ING K GRWKATL +YK   RDQ+V  P 
Sbjct: 1   MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRDQAV--PA 58

Query: 606 EFPRDLMGISLQEQPSKYYFIIRSQRIVLEADTLVQMIMEKLQSYRSRISVNFEGIQYQL 427
           E+PRD +GISL EQP++YYFIIRSQ+IVLEAD+ +QMIMEKLQSY+SR+S+ FEG QYQL
Sbjct: 59  EYPRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQL 118

Query: 426 GDFQLRIGKVVATNADSLRGIVLEMEYLPISSVEKSRLIMEEFLDMWQEIVSKRSLPGRL 247
           GDFQLR+GKV  + +++LRGIV E+EYLP+SS+EKSR I++ F+++WQE +SKRSLPG  
Sbjct: 119 GDFQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHF 178

Query: 246 MHIEPNFAEYGLADHYTPQHTVVQYATVMTHLLQS 142
           MHIEPNFAE+GL+DHYT QHT VQYATVM  L+ +
Sbjct: 179 MHIEPNFAEFGLSDHYTSQHTAVQYATVMAQLISA 213


>ref|XP_004141069.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           20a-like [Cucumis sativus]
           gi|449488087|ref|XP_004157936.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 20a-like
           [Cucumis sativus]
          Length = 223

 Score =  310 bits (795), Expect = 2e-82
 Identities = 147/213 (69%), Positives = 178/213 (83%)
 Frame = -2

Query: 786 MPIKWVLYWQANVGATVNTQILTEISQCVETINGSKGGRWKATLNYYKANTRDQSVANPP 607
           MP+KWVL+WQ N G+TVN+QIL E+SQCVE+I+G KGG+WKATL +YK   RDQ+ +   
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN-SPAA 59

Query: 606 EFPRDLMGISLQEQPSKYYFIIRSQRIVLEADTLVQMIMEKLQSYRSRISVNFEGIQYQL 427
           EFPRD +GISL EQP+KYY IIR QRIVLEAD  +Q IMEKLQSY+ R+++NFEG QYQL
Sbjct: 60  EFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQL 119

Query: 426 GDFQLRIGKVVATNADSLRGIVLEMEYLPISSVEKSRLIMEEFLDMWQEIVSKRSLPGRL 247
           GDFQLR+GKVV  N+++LRGIV+E+EYLPISS+EKSR +MEEF D+WQE +SK SLPGR 
Sbjct: 120 GDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRF 179

Query: 246 MHIEPNFAEYGLADHYTPQHTVVQYATVMTHLL 148
           MHIE NFAEYGL+D+YT QHT VQY  VM  L+
Sbjct: 180 MHIESNFAEYGLSDYYTSQHTAVQYGNVMAQLI 212


>emb|CBI27822.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score =  308 bits (788), Expect = 1e-81
 Identities = 145/216 (67%), Positives = 182/216 (84%), Gaps = 1/216 (0%)
 Frame = -2

Query: 786 MPIKWVLYWQANVGATVNTQILTEISQCVETINGSKGGRWKATLNYYKANTR-DQSVANP 610
           MP+KWV +WQ N G TVN+Q++ E+SQCVE+ING K GRWKATL +YK   R DQ+V  P
Sbjct: 1   MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRADQAV--P 58

Query: 609 PEFPRDLMGISLQEQPSKYYFIIRSQRIVLEADTLVQMIMEKLQSYRSRISVNFEGIQYQ 430
            E+PRD +GISL EQP++YYFIIRSQ+IVLEAD+ +QMIMEKLQSY+SR+S+ FEG QYQ
Sbjct: 59  AEYPRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQ 118

Query: 429 LGDFQLRIGKVVATNADSLRGIVLEMEYLPISSVEKSRLIMEEFLDMWQEIVSKRSLPGR 250
           LGDFQLR+GKV  + +++LRGIV E+EYLP+SS+EKSR I++ F+++WQE +SKRSLPG 
Sbjct: 119 LGDFQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGH 178

Query: 249 LMHIEPNFAEYGLADHYTPQHTVVQYATVMTHLLQS 142
            MHIEPNFAE+GL+DHYT QHT VQYATVM  L+ +
Sbjct: 179 FMHIEPNFAEFGLSDHYTSQHTAVQYATVMAQLISA 214