BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007945
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520518.1| protein with unknown function [Ricinus commu...   177   1e-42
ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|2...   169   4e-40
dbj|BAJ34634.1| unnamed protein product [Thellungiella halophila]     137   1e-30
dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]     137   1e-30
ref|NP_563790.1| transcription initiation factor TFIIA large sub...   136   2e-30

>ref|XP_002520518.1| protein with unknown function [Ricinus communis]
           gi|223540360|gb|EEF41931.1| protein with unknown
           function [Ricinus communis]
          Length = 383

 Score =  177 bits (448), Expect = 1e-42
 Identities = 99/199 (49%), Positives = 111/199 (55%), Gaps = 44/199 (22%)
 Frame = +3

Query: 12  QPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQDGAGDGAYDVFQTE------------- 152
           QP TQDFF  +SGKRKREDFA  ++ GG+IPQQDGAGD  ++V Q E             
Sbjct: 185 QPLTQDFFTGASGKRKREDFAAQYNNGGFIPQQDGAGDTPFEVLQVERDTVISADIEILS 244

Query: 153 ----------------------------LYPYQGVASEDYNTVNTPAPLDLHAGTPNVGT 248
                                       +Y YQGVA+EDYN  NTPAP DL A TP +  
Sbjct: 245 SVTRRGLKIPQLDGPIPDPYDDVLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAIIP 304

Query: 249 QNDIVXXXXXXXXXXXXXXXXXXXXXXXX---NTQHLVLAQFDKVTRTKSRWKCTLKDGI 419
           QND+V                           NTQHLVLAQFDKVTRTKSRWKCTLKDGI
Sbjct: 305 QNDVVDDDDDEPLNEDDDDDDDLDDVDQGEDMNTQHLVLAQFDKVTRTKSRWKCTLKDGI 364

Query: 420 MHINNKDILFTKASGEFEF 476
           MHINNKDILF KA+GEF+F
Sbjct: 365 MHINNKDILFNKATGEFDF 383


>ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|222845598|gb|EEE83145.1|
           predicted protein [Populus trichocarpa]
          Length = 409

 Score =  169 bits (427), Expect = 4e-40
 Identities = 99/199 (49%), Positives = 110/199 (55%), Gaps = 44/199 (22%)
 Frame = +3

Query: 12  QPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQDGAGDGAYDVFQTE------------- 152
           Q  TQDFFM SSGKRKR DFAP ++ GG+IPQQDGA D A +V Q E             
Sbjct: 212 QTLTQDFFM-SSGKRKRGDFAPKYNNGGFIPQQDGAVDSASEVSQVECDTITTKNREILA 270

Query: 153 ----------------------------LYPYQGVASEDYNTVNTPAPLDLHAGTPNVGT 248
                                       +Y YQGVA+EDYN  NTPAP DL A TP V +
Sbjct: 271 RVSRSYVKIPQVDGPIPDPYDDMLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAVVS 330

Query: 249 QNDIVXXXXXXXXXXXXXXXXXXXXXXXX---NTQHLVLAQFDKVTRTKSRWKCTLKDGI 419
           QND V                           NTQHL+LAQFDKVTRTKSRWKCTLKDG+
Sbjct: 331 QNDDVDDDDDEPLNEDDDDDEDLDGVDQGEELNTQHLILAQFDKVTRTKSRWKCTLKDGV 390

Query: 420 MHINNKDILFTKASGEFEF 476
           MHINN+DILF KA+GEFEF
Sbjct: 391 MHINNRDILFNKATGEFEF 409


>dbj|BAJ34634.1| unnamed protein product [Thellungiella halophila]
          Length = 330

 Score =  137 bits (345), Expect = 1e-30
 Identities = 87/202 (43%), Positives = 101/202 (50%), Gaps = 44/202 (21%)
 Frame = +3

Query: 3   NPPQPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQDGAGDGA----------------- 131
           N  Q  TQD F+ S+GKRKR+D +  +  GG IPQQDGA D                   
Sbjct: 131 NSNQQFTQDLFVPSNGKRKRDDSSAQYQNGGSIPQQDGASDAMPKANIEGDTLCITLVGN 190

Query: 132 ------------------------YDVFQT--ELYPYQGVASEDYNTVNTPAPLDLHAGT 233
                                   YD   +   +Y YQG  SED+N   TPAP ++ A T
Sbjct: 191 RKFPRDFICSSSKIPQVDGPMPDPYDEILSTPNIYSYQG-PSEDFNDGRTPAPNEIQAST 249

Query: 234 PNVGTQNDIVXXXXXXXXXXXXXXXXXXXXXXXX-NTQHLVLAQFDKVTRTKSRWKCTLK 410
           P V  QNDI+                         NTQHLVLAQFDKVTRTKSRWKC LK
Sbjct: 250 P-VAAQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCNLK 308

Query: 411 DGIMHINNKDILFTKASGEFEF 476
           DGIMHIN+KDILF KA+GEF+F
Sbjct: 309 DGIMHINDKDILFNKAAGEFDF 330


>dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]
          Length = 375

 Score =  137 bits (345), Expect = 1e-30
 Identities = 87/202 (43%), Positives = 101/202 (50%), Gaps = 44/202 (21%)
 Frame = +3

Query: 3   NPPQPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQDGAGDGA----------------- 131
           N  Q  TQD F+ S+GKRKR+D +  +  GG IPQQDGA D                   
Sbjct: 176 NSNQQFTQDLFVPSNGKRKRDDSSAQYQNGGSIPQQDGASDAMPKANIEGDTLCITLVGN 235

Query: 132 ------------------------YDVFQT--ELYPYQGVASEDYNTVNTPAPLDLHAGT 233
                                   YD   +   +Y YQG  SED+N   TPAP ++ A T
Sbjct: 236 RKFPRDFICSSSKIPQVDGPMPDPYDEILSTPNIYSYQG-PSEDFNDGRTPAPNEIQAST 294

Query: 234 PNVGTQNDIVXXXXXXXXXXXXXXXXXXXXXXXX-NTQHLVLAQFDKVTRTKSRWKCTLK 410
           P V  QNDI+                         NTQHLVLAQFDKVTRTKSRWKC LK
Sbjct: 295 P-VAAQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCNLK 353

Query: 411 DGIMHINNKDILFTKASGEFEF 476
           DGIMHIN+KDILF KA+GEF+F
Sbjct: 354 DGIMHINDKDILFNKAAGEFDF 375


>ref|NP_563790.1| transcription initiation factor TFIIA large subunit [Arabidopsis
           thaliana] gi|15983370|gb|AAL11553.1|AF424559_1
           At1g07470/F22G5_13 [Arabidopsis thaliana]
           gi|14532726|gb|AAK64164.1| putative transcription factor
           IIA large subunit [Arabidopsis thaliana]
           gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13
           [Arabidopsis thaliana] gi|21554033|gb|AAM63114.1|
           transcription factor IIA large subunit [Arabidopsis
           thaliana] gi|22136784|gb|AAM91736.1| putative
           transcription factor IIA large subunit [Arabidopsis
           thaliana] gi|39545872|gb|AAR27999.1| TFIIA-L2
           [Arabidopsis thaliana] gi|332190008|gb|AEE28129.1|
           transcription initiation factor TFIIA large subunit
           [Arabidopsis thaliana]
          Length = 375

 Score =  136 bits (343), Expect = 2e-30
 Identities = 85/202 (42%), Positives = 101/202 (50%), Gaps = 44/202 (21%)
 Frame = +3

Query: 3   NPPQPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQDGAGDGA----------------- 131
           N  Q  TQD F+ SSGKRKR+D + H+  GG IPQQDGA D                   
Sbjct: 176 NSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEANFECAALRITYVGD 235

Query: 132 ------------------------YDVFQT--ELYPYQGVASEDYNTVNTPAPLDLHAGT 233
                                   YD   +   +Y YQG  +E++N   TPAP ++   T
Sbjct: 236 RKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG-PNEEFNEARTPAPNEIQTST 294

Query: 234 PNVGTQNDIVXXXXXXXXXXXXXXXXXXXXXXXX-NTQHLVLAQFDKVTRTKSRWKCTLK 410
           P V   NDI+                         NTQHLVLAQFDKVTRTKSRWKC+LK
Sbjct: 295 P-VAVPNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLK 353

Query: 411 DGIMHINNKDILFTKASGEFEF 476
           DGIMHIN+KDILF KA+GEF+F
Sbjct: 354 DGIMHINDKDILFNKATGEFDF 375