BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007939
         (1301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   127   6e-27
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   126   1e-26
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...   115   2e-23
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   112   2e-22
ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumi...    96   2e-17

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  127 bits (319), Expect = 6e-27
 Identities = 113/415 (27%), Positives = 180/415 (43%), Gaps = 30/415 (7%)
 Frame = -3

Query: 1242 RFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYARMFH 1063
            RF  VC  WR        +   +LPWL+LP                         ++  H
Sbjct: 27   RFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ------------------------SQPHH 62

Query: 1062 MHCKQDTYYCDGLLSFYSVLERKIYRVETP---HGQRICGTSFGWLIIIGENSDMKLFHP 892
             H             F+S+   K + ++ P   H +R  G+S GWL+I+ E  ++ L +P
Sbjct: 63   TH-----------RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNP 111

Query: 891  FTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAH----KDEVVASC 724
             T   + LPPL    N +R+ +  + G  Y    ++ + Y   ++       K  +++S 
Sbjct: 112  LTRSKVHLPPLSTFPNVVRFNFA-DVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSS 170

Query: 723  GSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDLIYFNGE 544
             ++ S+ I    ++LN    L  +  K         DDSW  +E  + ++ +D+I+  G 
Sbjct: 171  PANGSDFIA--VVILNQTGDLA-LCRKS--------DDSWTFLEDAQ-SYAEDVIFHRGL 218

Query: 543  YYAXXXXXXXXXXXXXXGYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILDD-- 370
            +YA                S P  S++    +F    D  YLV +  +LL VTR LD   
Sbjct: 219  FYAVNKYGSIAVCDVSG--SSPRVSIIEMPQQF--GGDLQYLVESGEELLLVTRYLDLTY 274

Query: 369  ---------FNATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGCKEN 217
                        T RF V +LD    +W  V SL + ALF+G N S S+ + +FPGCK N
Sbjct: 275  DVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGN 334

Query: 216  CIYF--------FTG----EDKGVFNLQDGTIQTICPSDSKFISPQPIRFSANPC 88
            CIY+        + G    +D G+FNL+DG+I+ +  S  +   P P+  + NPC
Sbjct: 335  CIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNPC 389


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  126 bits (317), Expect = 1e-26
 Identities = 113/415 (27%), Positives = 180/415 (43%), Gaps = 30/415 (7%)
 Frame = -3

Query: 1242 RFSCVCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYARMFH 1063
            RF  VC  WR        +   +LPWL+LP                         ++  H
Sbjct: 27   RFRAVCHNWRASVPKTPHHLPTQLPWLMLPQ------------------------SQPHH 62

Query: 1062 MHCKQDTYYCDGLLSFYSVLERKIYRVETP---HGQRICGTSFGWLIIIGENSDMKLFHP 892
             H             F+S+   K + ++ P   H +R  G+S GWL+I+ E  ++ L +P
Sbjct: 63   TH-----------RPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNP 111

Query: 891  FTGKVLDLPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAH----KDEVVASC 724
             T   + LPPL    N +R+ +  + G  Y    ++ + Y   ++       K  +++S 
Sbjct: 112  LTRSKVHLPPLSTFPNVVRFNFA-DVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSS 170

Query: 723  GSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDLIYFNGE 544
             ++ S+ I    ++LN    L  +  K         DDSW  +E  + ++ +D+I+  G 
Sbjct: 171  PANGSDFIA--VVILNQTGDLA-LCRKS--------DDSWTFLEDAQ-SYSEDVIFHRGL 218

Query: 543  YYAXXXXXXXXXXXXXXGYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILDD-- 370
            +YA                S P  S++    +F    D  YLV +  +LL VTR LD   
Sbjct: 219  FYAVNKYGSIAVCDVSG--SSPRVSIIEMPQQF--GGDLQYLVESGEELLLVTRYLDLTY 274

Query: 369  ---------FNATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGCKEN 217
                        T RF V +LD    +W  V SL + ALF+G N S S+ + +FPGCK N
Sbjct: 275  DVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGN 334

Query: 216  CIYF--------FTG----EDKGVFNLQDGTIQTICPSDSKFISPQPIRFSANPC 88
            CIY+        + G    +D G+FNL+DG+I+ +  S  +   P P+  + NPC
Sbjct: 335  CIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNPC 389


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score =  115 bits (289), Expect = 2e-23
 Identities = 99/328 (30%), Positives = 145/328 (44%), Gaps = 33/328 (10%)
 Frame = -3

Query: 972  HGQRICGTSFGWLIIIGENSDMKLFHPFTGKVLDLPPLQVSNNALRYKYRLETGILYNAT 793
            H  RICG+S GWL+++ E   ++L +P T     LPPL    N + + +    G  Y   
Sbjct: 78   HRTRICGSSHGWLVMLDETPQIRLLNPLTRATRPLPPLHAFPNVVAFDHA-NVGREYLIQ 136

Query: 792  MNAEECYADYIR---NAHKDEVVASCGSDSSNSICHPPIVLNIPLHLGKIVHKQLHFTRP 622
                  YA  +R   N+   +VV S     ++      IV              L F R 
Sbjct: 137  NPYGGLYAFNLRQMCNSFLGKVVLSASPTLNDDFAALAIV----------GQNNLAFCRN 186

Query: 621  GKDDSWIAI--ESERGNHYDDLIYFNGEYYAXXXXXXXXXXXXXXGYSMPTTSLVASSNK 448
            G D SWI +  E E  N ++D++ +NG ++A              G   P  S++ ++  
Sbjct: 187  GYD-SWIFLNGEEEEMNCWEDVVNYNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTP 245

Query: 447  FVFSRDSFYLVATSSDLLKVTRILD-DFN-----------ATQRFLVQKLDFAEAKWLEV 304
            F F+ D  Y V ++ D+L + R+LD DF+            T  F V K+++    W  V
Sbjct: 246  FGFAGDIHYAVFSAGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRV 305

Query: 303  DSLTNCALFVGVNDSFSVVASEFPGCKENCIYFFTG------------EDKGVFNLQDGT 160
            ++L    LFVG N S S  AS+F GC  +CIYF                D GVF L+D +
Sbjct: 306  ETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTDDYSESNDDDACGKHDLGVFRLRDKS 365

Query: 159  IQTI-C---PSDSKFISPQPIRFSANPC 88
            I+ + C    S S+   P PI  S NPC
Sbjct: 366  IEPLPCFNQNSCSRLRWPLPIWVSPNPC 393


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  112 bits (280), Expect = 2e-22
 Identities = 115/417 (27%), Positives = 170/417 (40%), Gaps = 36/417 (8%)
 Frame = -3

Query: 1230 VCPTWRCVSASEISNRRYRLPWLILPNEFESNSNEKDGSSRDLFLGYGDMYARMFHMHCK 1051
            VC  WR       ++   +LPWL+LP   +S SN+    SR  F     +    FH    
Sbjct: 32   VCHAWRFSIPKTPNHLPPQLPWLMLPQS-QSQSNQ----SRRAFFS---LSTNKFHF--- 80

Query: 1050 QDTYYCDGLLSFYSVLERKIYRVETPHGQRICGTSFGWLIIIGENSDMKLFHPFTGKVLD 871
                               +   E  + +R CG+S GWL+I+ +   + L +P T   L 
Sbjct: 81   -------------------LNLPEVSYRKRHCGSSHGWLMILDDTPTILLINPLTRAKLS 121

Query: 870  LPPLQVSNNALRYKYRLETGILYNATMNAEECYADYIRNAHKDEVVASCGSDSSNSICHP 691
            LPPL    N + + Y  + G  Y             +RN   + V  S      +S    
Sbjct: 122  LPPLSSFPNVISFNYS-DIGREYA------------LRNLLGERVTVSL-RQMRDSFIRK 167

Query: 690  PIVLNIPLHLGKIV-------HKQLHFTRPGKDDSWIAIESERGNHYDDLIYFNGEYYAX 532
             ++ + PL     V          L + R G D SW  +E+ R +  +D+I+ NG +YA 
Sbjct: 168  VVLSSSPLKDNNFVVIAILNQTDDLAYCRNG-DKSWSLVENAR-SFCEDVIFVNGMFYAV 225

Query: 531  XXXXXXXXXXXXXGYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILD---DFN- 364
                             P  S + +  +     D  YLV +  +LL VTR LD   +F+ 
Sbjct: 226  NKAGQIVICDISS--DSPRVSFMETPRQA--GGDMQYLVNSGDELLLVTRYLDLEYEFDH 281

Query: 363  ---------ATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGCKENCI 211
                      T RF V +LD+   +WL + +L + ALF+G N S S+ A++F GC  NCI
Sbjct: 282  PDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCI 341

Query: 210  YF------------FTGEDKGVFNLQDGTIQTICPSDSKFISP----QPIRFSANPC 88
            Y+            F   D G+F L D TI+ +      F SP     P+  S NPC
Sbjct: 342  YYTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLWVSPNPC 398


>ref|XP_004145529.1| PREDICTED: F-box protein SKIP23-like [Cucumis sativus]
            gi|449485151|ref|XP_004157083.1| PREDICTED: F-box protein
            SKIP23-like [Cucumis sativus]
          Length = 392

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 98/351 (27%), Positives = 148/351 (42%), Gaps = 37/351 (10%)
 Frame = -3

Query: 1029 GLLSFYSVLERKIYRVETPHGQRICGTSFGWLIIIGENSDMKLFHPFTGKVLDLPPLQVS 850
            GL +F       +Y  E    +R CG+S GWL I+ E   + L +PFT   L LPPL   
Sbjct: 64   GLFNFSDNKIHFLYLPEISLRKRPCGSSHGWLTIVDETPPILLLNPFTRAKLWLPPLSTF 123

Query: 849  NNALRYKY---------RLETGILYNATMNAEECYADYIRNAHKDEVVASCGSDSSNSIC 697
             N + + Y         R  TG +Y   +         +R++   ++V S    + N   
Sbjct: 124  PNVVSFDYSRVGREYLIRTPTGHIYTRNLR-------QMRDSFVKKIVLSSSPSNPNDF- 175

Query: 696  HPPIVLNIPLHLGKIVHKQLHFTRPGKDDSWIAIESERGNHYDDLIYFNGEYYAXXXXXX 517
               + + I  H G      L F R G   SW  ++ +  +  +D+IY +G +YA      
Sbjct: 176  ---LAVAILNHSG-----DLAFCRSG-GGSWTFVD-DAPSDCEDVIYSDGVFYAVDKYGV 225

Query: 516  XXXXXXXXGYSMPTTSLVASSNKFVFSRDSFYLVATSSDLLKVTRILDDFN--------- 364
                      S    SLVA+  +   + D  YLV    +LL V+R LD  N         
Sbjct: 226  VSLMDLRG--SRSQVSLVATERQ--LAGDIQYLVKLGQELLLVSRYLDIVNDGMEDELIP 281

Query: 363  ---ATQRFLVQKLDFAEAKWLEVDSLTNCALFVGVNDSFSVVASEFPGCKENCIYFF--- 202
                T RF V ++++   +W +V++L   ALFVG N S +  A++F     NCIY+    
Sbjct: 282  VMYRTVRFEVFRMEWEGPRWEKVENLNEMALFVGGNSSMAFSAADFGEISGNCIYYTDDY 341

Query: 201  -------TGE--DKGVFNLQDGTIQTI----CPSDSKFISPQPIRFSANPC 88
                    GE  D G+F L D + + +      S S+     PI  + NPC
Sbjct: 342  SDSDYQEQGEEPDMGIFRLCDESFEPLPYYSGGSHSRRRLLPPIWVTPNPC 392