BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007927
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518990.1| PREDICTED: gamma-tubulin complex component 4...    64   2e-08
ref|XP_002320339.1| tubulin gamma complex-associated protein [Po...    60   1e-07
ref|XP_002877940.1| tubulin family protein [Arabidopsis lyrata s...    60   2e-07
ref|XP_002523094.1| gamma-tubulin complex component, putative [R...    60   2e-07
ref|XP_002270318.1| PREDICTED: gamma-tubulin complex component 4...    59   3e-07

>ref|XP_003518990.1| PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max]
          Length = 733

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 43/96 (44%), Positives = 46/96 (47%), Gaps = 43/96 (44%)
 Frame = -3

Query: 384 SRILDSIMKLCLQFCWNIE--CDSVNTTELEHIT-------------------------- 289
           SRILDSIMKLCLQFCWNIE   +  NT+ELEHI                           
Sbjct: 638 SRILDSIMKLCLQFCWNIENQDNCSNTSELEHIAEEFNKKSNSLYTILRSSRLAGSQRAP 697

Query: 288 ---------------ETTARGVLNVVRSRPTLPDLH 226
                          E TARGVLNVVR RPTLP L+
Sbjct: 698 FLRRFLLRLNLNSFFEATARGVLNVVRPRPTLPVLN 733


>ref|XP_002320339.1| tubulin gamma complex-associated protein [Populus trichocarpa]
           gi|222861112|gb|EEE98654.1| tubulin gamma
           complex-associated protein [Populus trichocarpa]
          Length = 728

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/93 (41%), Positives = 46/93 (49%), Gaps = 43/93 (46%)
 Frame = -3

Query: 384 SRILDSIMKLCLQFCWNIEC--DSVNTTELEHIT-------------------------- 289
           SRILDSIMKLCLQFCW+IE   ++ NT+ELEH+T                          
Sbjct: 635 SRILDSIMKLCLQFCWSIENQENNPNTSELEHLTEEFNKKSNSLYTILRSSRLAGSQRAP 694

Query: 288 ---------------ETTARGVLNVVRSRPTLP 235
                          ETTA+GVLN+VR  PTLP
Sbjct: 695 FLRRFLLRLNFNLFFETTAQGVLNIVRPSPTLP 727


>ref|XP_002877940.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323778|gb|EFH54199.1| tubulin family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 745

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/93 (43%), Positives = 44/93 (47%), Gaps = 43/93 (46%)
 Frame = -3

Query: 384 SRILDSIMKLCLQFCWNIEC--DSVNTTELEHIT-------------------------- 289
           SRILDSIMKLCLQFCWNIE   ++ NT+ELE+I                           
Sbjct: 652 SRILDSIMKLCLQFCWNIESQENNPNTSELENIAEEFNKKSNSLYTILRSSKLAGSQRAP 711

Query: 288 ---------------ETTARGVLNVVRSRPTLP 235
                          E TARGVLNVVR RP LP
Sbjct: 712 FLRRFLLRLNFNSFYEATARGVLNVVRQRPALP 744


>ref|XP_002523094.1| gamma-tubulin complex component, putative [Ricinus communis]
           gi|223537656|gb|EEF39279.1| gamma-tubulin complex
           component, putative [Ricinus communis]
          Length = 756

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/95 (42%), Positives = 45/95 (47%), Gaps = 43/95 (45%)
 Frame = -3

Query: 384 SRILDSIMKLCLQFCWNIEC--DSVNTTELEHIT-------------------------- 289
           SRILDSIM+LCLQFCW+IE    + NT+EL+HIT                          
Sbjct: 655 SRILDSIMRLCLQFCWSIENQESNPNTSELDHITEEFNKKSNSLYTILRSSRLAGSQRAP 714

Query: 288 ---------------ETTARGVLNVVRSRPTLPDL 229
                          E TARGVLNVVR  PTLP L
Sbjct: 715 FLRRFLLRLNYNAFFEATARGVLNVVRPSPTLPSL 749


>ref|XP_002270318.1| PREDICTED: gamma-tubulin complex component 4 homolog [Vitis
           vinifera] gi|297743902|emb|CBI36872.3| unnamed protein
           product [Vitis vinifera]
          Length = 743

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 41/91 (45%), Positives = 43/91 (47%), Gaps = 43/91 (47%)
 Frame = -3

Query: 384 SRILDSIMKLCLQFCWNIEC--DSVNTTELEHIT-------------------------- 289
           SRILDSIMKLCLQFCWNIE    S NT+ELE IT                          
Sbjct: 649 SRILDSIMKLCLQFCWNIENQESSSNTSELERITEEFNKKSNSLYTILRSSRLAGSQRAP 708

Query: 288 ---------------ETTARGVLNVVRSRPT 241
                          E TARGVLNVVRSRP+
Sbjct: 709 FLRRFLLRLNFNSYFEATARGVLNVVRSRPS 739