BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007925
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   159   2e-37
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   159   3e-37
ref|NP_187576.1| pentatricopeptide repeat-containing protein [Ar...   153   1e-35
dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]           153   1e-35
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-35

>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  159 bits (403), Expect = 2e-37
 Identities = 77/96 (80%), Positives = 83/96 (86%)
 Frame = +3

Query: 12  ESRLLPKKYMPDSRMYTTLMKGYMKTGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVIST 191
           E  LLPK Y PDSR+YTTLMKGYM  GRVSD +RMLEAMRHQ D ASHPDHV+YTTVIS 
Sbjct: 365 EPSLLPKVYAPDSRIYTTLMKGYMNQGRVSDTIRMLEAMRHQDDNASHPDHVSYTTVISA 424

Query: 192 LVNVGAMDRARQVLAEMARVGVPANRITYNILLKGY 299
           LV  G+MDRARQVLAEM R+GVPANRITYNILLKG+
Sbjct: 425 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGH 460


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  159 bits (401), Expect = 3e-37
 Identities = 76/96 (79%), Positives = 82/96 (85%)
 Frame = +3

Query: 12  ESRLLPKKYMPDSRMYTTLMKGYMKTGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVIST 191
           E  LLPK Y PDSR+YTTLMKGYMK GRV+D VRMLEAMRHQ D  S PDHVTYTTV+S 
Sbjct: 369 EPPLLPKAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMRHQDDSTSQPDHVTYTTVVSA 428

Query: 192 LVNVGAMDRARQVLAEMARVGVPANRITYNILLKGY 299
           LV  G+MDRARQVLAEM R+GVPANR+TYNILLKGY
Sbjct: 429 LVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGY 464


>ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g09650, chloroplastic; AltName: Full=Protein HIGH
           CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
           gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical
           protein [Arabidopsis thaliana]
           gi|332641272|gb|AEE74793.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 778

 Score =  153 bits (387), Expect = 1e-35
 Identities = 74/96 (77%), Positives = 81/96 (84%)
 Frame = +3

Query: 12  ESRLLPKKYMPDSRMYTTLMKGYMKTGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVIST 191
           E  LLPK + PDSR+YTTLMKGYMK GRV+D  RMLEAMR Q D+ SHPD VTYTTV+S 
Sbjct: 402 EPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSA 461

Query: 192 LVNVGAMDRARQVLAEMARVGVPANRITYNILLKGY 299
            VN G MDRARQVLAEMAR+GVPANRITYN+LLKGY
Sbjct: 462 FVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGY 497


>dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]
          Length = 778

 Score =  153 bits (387), Expect = 1e-35
 Identities = 74/96 (77%), Positives = 81/96 (84%)
 Frame = +3

Query: 12  ESRLLPKKYMPDSRMYTTLMKGYMKTGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVIST 191
           E  LLPK + PDSR+YTTLMKGYMK GRV+D  RMLEAMR Q D+ SHPD VTYTTV+S 
Sbjct: 402 EPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSA 461

Query: 192 LVNVGAMDRARQVLAEMARVGVPANRITYNILLKGY 299
            VN G MDRARQVLAEMAR+GVPANRITYN+LLKGY
Sbjct: 462 FVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGY 497


>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
           gi|449483612|ref|XP_004156638.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score =  152 bits (383), Expect = 4e-35
 Identities = 72/96 (75%), Positives = 82/96 (85%)
 Frame = +3

Query: 12  ESRLLPKKYMPDSRMYTTLMKGYMKTGRVSDVVRMLEAMRHQSDKASHPDHVTYTTVIST 191
           E  LLPK Y P+SR+YTTLMKGYM  GRV D +RMLEAMR+Q D++SHPDHV+YTTV+S 
Sbjct: 362 EPPLLPKIYSPNSRIYTTLMKGYMNEGRVGDTIRMLEAMRNQGDRSSHPDHVSYTTVVSA 421

Query: 192 LVNVGAMDRARQVLAEMARVGVPANRITYNILLKGY 299
           LV  G+MDRARQVLAEM R+G PANRITYNILLKGY
Sbjct: 422 LVKAGSMDRARQVLAEMTRIGCPANRITYNILLKGY 457