BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007896
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]                         414   e-113
emb|CBI19782.3| unnamed protein product [Vitis vinifera]              408   e-111
ref|XP_002279990.2| PREDICTED: transcription initiation factor I...   406   e-111
ref|XP_004152667.1| PREDICTED: transcription initiation factor I...   405   e-110
ref|XP_002510468.1| Transcription initiation factor IIF subunit ...   404   e-110

>dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]
          Length = 262

 Score =  414 bits (1063), Expect = e-113
 Identities = 203/260 (78%), Positives = 228/260 (87%), Gaps = 2/260 (0%)
 Frame = +2

Query: 92  MEEDRNGSSSSGSNLDTAKSDRSVWLMKTPLVVSKSWQAHAS--DPHPVAKVVLSIDPLR 265
           M+ED   + S+   L+TAK+DRSVWLMK PLVV+KSWQ+HAS  D HPVAKVVLS+DPLR
Sbjct: 1   MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60

Query: 266 SSDDPSSVQFTMEMADTDSGNMPKKYSLNMFKDFVPMGVFAEGNPGKIAVEGKVEHKFDM 445
           S DDPS++QFTMEMA  + GN+PK YSLNMFKDFVPM VF+E + G++A+EGKVEHKFDM
Sbjct: 61  S-DDPSALQFTMEMAGNEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFDM 119

Query: 446 KPHNENIEAYGKLCRERTDKSKIKNRQIQMIDNDRGEHMRIRPGTVGLISSISKDKKKTA 625
           KPH ENIE YG+LCRERT+KS +KNRQIQ+IDNDRG HMR  PG +GL+SS SKDKKKTA
Sbjct: 120 KPHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSKDKKKTA 179

Query: 626 PVKASDMKRTRRDRGELEDIMFKLFERQPNWSLKKLVHETDQPEQFLKEILQELCVYNKR 805
           PVK SDMKRTRRDRGELEDIMFKLFERQPNW+LK+LV ETDQP QFLKEIL ELCVYNKR
Sbjct: 180 PVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 239

Query: 806 GTNQGTYELKPEYKKSVEDA 865
           GTNQGTYELKPEYKKS EDA
Sbjct: 240 GTNQGTYELKPEYKKSAEDA 259


>emb|CBI19782.3| unnamed protein product [Vitis vinifera]
          Length = 259

 Score =  408 bits (1048), Expect = e-111
 Identities = 204/258 (79%), Positives = 227/258 (87%), Gaps = 1/258 (0%)
 Frame = +2

Query: 92  MEEDRNGSSSSGSNLDTAKSDRSVWLMKTPLVVSKSWQAHAS-DPHPVAKVVLSIDPLRS 268
           MEE++  SSSS  NL+T K++RSVWLMK PL VSKSWQ+H+S +  PVAKVVLS+DPLRS
Sbjct: 1   MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKSWQSHSSSESQPVAKVVLSLDPLRS 58

Query: 269 SDDPSSVQFTMEMADTDSGNMPKKYSLNMFKDFVPMGVFAEGNPGKIAVEGKVEHKFDMK 448
            +DPS+++FTMEM  T + NMPK YSLNMFKDFVPM VF+E N G++A+EGKVEHKFDMK
Sbjct: 59  -EDPSALEFTMEMTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMK 117

Query: 449 PHNENIEAYGKLCRERTDKSKIKNRQIQMIDNDRGEHMRIRPGTVGLISSISKDKKKTAP 628
           PHNENIE YGKLCRERT+KS IKNRQIQ+IDNDRG HMR  PG VGLI+S SKDKKKTAP
Sbjct: 118 PHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKTAP 177

Query: 629 VKASDMKRTRRDRGELEDIMFKLFERQPNWSLKKLVHETDQPEQFLKEILQELCVYNKRG 808
           VK SDMKRTRRDRGELEDIMFKLFERQPNW+LK+LV ETDQP QFLKEIL ELCVYNKRG
Sbjct: 178 VKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 237

Query: 809 TNQGTYELKPEYKKSVED 862
           TNQGTYELKPEYKKS ED
Sbjct: 238 TNQGTYELKPEYKKSAED 255


>ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis
           vinifera]
          Length = 260

 Score =  406 bits (1043), Expect = e-111
 Identities = 203/258 (78%), Positives = 223/258 (86%), Gaps = 1/258 (0%)
 Frame = +2

Query: 92  MEEDRNGSSSSGSNLDTAKSDRSVWLMKTPLVVSKSWQAHAS-DPHPVAKVVLSIDPLRS 268
           MEE++  SSSS  NL+T K++RSVWLMK PL VSKSWQ+H+S +  PVAKVVLS+DPLRS
Sbjct: 1   MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKSWQSHSSSESQPVAKVVLSLDPLRS 58

Query: 269 SDDPSSVQFTMEMADTDSGNMPKKYSLNMFKDFVPMGVFAEGNPGKIAVEGKVEHKFDMK 448
            D  +  QFTMEM  T + NMPK YSLNMFKDFVPM VF+E N G++A+EGKVEHKFDMK
Sbjct: 59  EDPSALEQFTMEMTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMK 118

Query: 449 PHNENIEAYGKLCRERTDKSKIKNRQIQMIDNDRGEHMRIRPGTVGLISSISKDKKKTAP 628
           PHNENIE YGKLCRERT+KS IKNRQIQ+IDNDRG HMR  PG VGLI+S SKDKKKTAP
Sbjct: 119 PHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKTAP 178

Query: 629 VKASDMKRTRRDRGELEDIMFKLFERQPNWSLKKLVHETDQPEQFLKEILQELCVYNKRG 808
           VK SDMKRTRRDRGELEDIMFKLFERQPNW+LK+LV ETDQP QFLKEIL ELCVYNKRG
Sbjct: 179 VKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 238

Query: 809 TNQGTYELKPEYKKSVED 862
           TNQGTYELKPEYKKS ED
Sbjct: 239 TNQGTYELKPEYKKSAED 256


>ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like
           [Cucumis sativus] gi|449520699|ref|XP_004167371.1|
           PREDICTED: transcription initiation factor IIF subunit
           beta-like [Cucumis sativus]
          Length = 260

 Score =  405 bits (1040), Expect = e-110
 Identities = 198/256 (77%), Positives = 226/256 (88%), Gaps = 1/256 (0%)
 Frame = +2

Query: 98  EDRNGSSSSGSNLDTAKSDRSVWLMKTPLVVSKSWQAHA-SDPHPVAKVVLSIDPLRSSD 274
           ED +GS  S SNLDT K+DRSVWLMK PL+V+KSWQAH  SD  P+AKV+LS+DPL+S D
Sbjct: 2   EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQS-D 60

Query: 275 DPSSVQFTMEMADTDSGNMPKKYSLNMFKDFVPMGVFAEGNPGKIAVEGKVEHKFDMKPH 454
           + SS+QF MEMA T++GN+PK +SLNMFKDFVPM VF+E + GK+++EGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 455 NENIEAYGKLCRERTDKSKIKNRQIQMIDNDRGEHMRIRPGTVGLISSISKDKKKTAPVK 634
           +EN+E YGKLCRERT+KS +KNRQIQ+IDNDRG HMR  PG VGLISS SK+KKK APVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 635 ASDMKRTRRDRGELEDIMFKLFERQPNWSLKKLVHETDQPEQFLKEILQELCVYNKRGTN 814
            SD+KRTRRDRGELEDIMFKLFERQPNW+LK+LV ETDQP QFLKEIL ELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 815 QGTYELKPEYKKSVED 862
           QGTYELKPEYKKSVED
Sbjct: 241 QGTYELKPEYKKSVED 256


>ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
           communis] gi|223551169|gb|EEF52655.1| Transcription
           initiation factor IIF subunit beta, putative [Ricinus
           communis]
          Length = 257

 Score =  404 bits (1039), Expect = e-110
 Identities = 202/259 (77%), Positives = 224/259 (86%), Gaps = 2/259 (0%)
 Frame = +2

Query: 92  MEEDRNGSSSSGSNLDTAKSDRSVWLMKTPLVVSKSWQAHAS--DPHPVAKVVLSIDPLR 265
           M+ED   SS     L+TAK+DRSVWLMK PLVV++SW++HAS  D HPVAKVVLS+DPLR
Sbjct: 1   MDEDHGSSSGI---LETAKADRSVWLMKCPLVVARSWKSHASSSDSHPVAKVVLSLDPLR 57

Query: 266 SSDDPSSVQFTMEMADTDSGNMPKKYSLNMFKDFVPMGVFAEGNPGKIAVEGKVEHKFDM 445
           S D   S+QFTMEMA T++GN+PK YSLNMFKDFVPM VF+E   G++A+EGKVEHKFDM
Sbjct: 58  SDD---SLQFTMEMAGTENGNVPKSYSLNMFKDFVPMSVFSETTQGRVAIEGKVEHKFDM 114

Query: 446 KPHNENIEAYGKLCRERTDKSKIKNRQIQMIDNDRGEHMRIRPGTVGLISSISKDKKKTA 625
           KPH EN+E YG+LCRERT+KS IKNRQIQ+IDNDRG HMR  PG VGLISS SKDKKKTA
Sbjct: 115 KPHEENMEEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSSSKDKKKTA 174

Query: 626 PVKASDMKRTRRDRGELEDIMFKLFERQPNWSLKKLVHETDQPEQFLKEILQELCVYNKR 805
           PVK SDMKRTRRDRGELEDIMFKLFERQPNW+LK+LV ETDQP QFLKEIL ELCVYNKR
Sbjct: 175 PVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 234

Query: 806 GTNQGTYELKPEYKKSVED 862
           GTNQGTYELKPEYKKS ED
Sbjct: 235 GTNQGTYELKPEYKKSAED 253