BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007837
         (3691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              838   0.0  
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   834   0.0  
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   717   0.0  
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   711   0.0  
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   706   0.0  

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  838 bits (2164), Expect(2) = 0.0
 Identities = 441/783 (56%), Positives = 546/783 (69%), Gaps = 4/783 (0%)
 Frame = +1

Query: 991  SNKPILEALEKLEFRKAFLILSYCGKMKLEDVVTVDLIQRLQNMPIRAFESELWRVLGSK 1170
            ++ P L AL +LEFRKAFLILSY G  + ED+++ + I +L+N+P+  FE+E+W  LG K
Sbjct: 97   ASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRK 156

Query: 1171 CTNENYEIDRRENEDWDSGRTYLYHCYVDPDATYRFKGPYLHKQRTHLQRVLGDENVLLV 1350
               E    DR+ + DWDS +T++YHC+V PD +YRFKGPYL+K RTHLQRVLGDEN+LLV
Sbjct: 157  FIKEE---DRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLV 213

Query: 1351 KFAEESAEGNDFLSSSE----YRTIAKDGILVGLRRFCFFVFKDGGKEEKKKNPTSSAVK 1518
            KFAE+  + +    S++    Y  IA++GI VGLR++ FFVFKDGGKEEKKKNPTSS VK
Sbjct: 214  KFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VK 272

Query: 1519 CYFVCKEANAFADMRGPYTSFTNHEARCLFMHVHTVSSVVKYMARFSLILSKTVQLDIDL 1698
            CYFV  E++A +         T HEARC+FMH H VSSV KYMARFSLILSKTV+LD+DL
Sbjct: 273  CYFVFMESSALSGK-------TVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDL 325

Query: 1699 ASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGFISEDLAVNCPENMYKLKFMCQRE 1878
            ++VNI+RI D P  D DG+ + +E+ +PLILTDGTGFISEDLA+ CP N+ + K+M    
Sbjct: 326  STVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGN 385

Query: 1879 SEMVLDCGEKQGESSVLTQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTIQIR 2058
            S+                         PLLIQ RLF+NG AVKGT L+N+KLPP+TIQIR
Sbjct: 386  SD-------------------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIR 420

Query: 2059 PSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTEFFMELLVN 2238
            PSMIKVE DPKL  T + NS+EI  TS++PR+ SYLS+YLIALL+YGGVP E+FM LL +
Sbjct: 421  PSMIKVETDPKLSDTQTVNSVEINGTSNQPRR-SYLSKYLIALLSYGGVPNEYFMNLLKD 479

Query: 2239 ALKDAQQVHSNKRAALSVSLRYGEMDDFLVPRMILSGIPLDEPYLKTRLSVIMNEEXXXX 2418
            AL+DA  V S+KRAAL VSLR+GEMDD +V RMILSGIP+DEP+L   LS ++NEE    
Sbjct: 480  ALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGL 539

Query: 2419 XXXXXPINECYYLMGTADPTGRLKGDEVCIILDHGEVTGDVLVYRHPGLHFGDIHVLTAT 2598
                 P+N+C+YLMGTADPTG LK DEVCIILDHG+V G VLVY+HPGLHFGDIHVL AT
Sbjct: 540  RVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNAT 599

Query: 2599 TVRGLKEIVGNSKYAIFFPTKRCRSLADEIAKGDFDGDMYWVSTNPQLLELYNPSEPWRR 2778
             V  L+E VGN+KYAIFFP K  RSLADE+A  DFDGDMYWVS N QLL+ +  SEPW R
Sbjct: 600  YVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMR 659

Query: 2779 KHSTKSTFQPKPIGLSDNELEDILIQKFLTARFSSSNQIGSAADSWLAFMDRLLTLGDEC 2958
            K ST+     +P   S +ELE  L Q FLT RF +S+ IG AAD+WL FMDRLLTL D+C
Sbjct: 660  KRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDC 719

Query: 2959 ASEKQRLRDNMVHLVDIYYDSLDAPKTGKKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3138
            + EK+ L+  M+ L DIYYD+LDAPK+G KV                             
Sbjct: 720  SDEKECLKRKMLELTDIYYDALDAPKSGMKV----------------------------- 750

Query: 3139 XXXXXXQLKAEKFPHFMERQNRYCSKSVLGLIYDEVDLFRTTELQSNDAWKLPCFREQVV 3318
                  +LKAEKFPHFM R++ Y S S+LG IYD V+ F+     + + W+LP F    V
Sbjct: 751  --NVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAV 808

Query: 3319 PSS 3327
            P +
Sbjct: 809  PQA 811



 Score = 89.4 bits (220), Expect(2) = 0.0
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +3

Query: 3402 WQKLYVQYRAEMTSVMXXXXXXXXXXXXXXVIQKYKQILYGTTEFDDSTREKEVIYNEAL 3581
            W+  Y QYR+EM + +              VI KYKQILYG  EF++S R  E I++EAL
Sbjct: 816  WKDRYDQYRSEMAAALQHGGETKDEYAAE-VINKYKQILYGAAEFEESPRNLEDIFDEAL 874

Query: 3582 AIFHVTYDYAKTNG--VGKCNFVWKVAGRALCTLY 3680
            AI+HVTY++   NG  V  CNF W+VAGRALC LY
Sbjct: 875  AIYHVTYEFV-INGARVSYCNFPWRVAGRALCKLY 908


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  834 bits (2155), Expect(2) = 0.0
 Identities = 442/791 (55%), Positives = 551/791 (69%), Gaps = 12/791 (1%)
 Frame = +1

Query: 991  SNKPILEALEKLEFRKAFLILSYCGKMKLEDVVTVDLIQRLQNMPIRAFESELWRVLGSK 1170
            ++ P L AL +LEFRKAFLILSY G+++ ED+++ + I +L+N+P+  FE+E+W  LG K
Sbjct: 97   ASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRK 156

Query: 1171 CTNENYEIDRRENEDWDSGRTYLYHCYVDPDATYRFK--------GPYLHKQRTHLQRVL 1326
               E    DR+ + DWDS +T++YHC+V PD +YRFK        GPYL+K RTHLQRVL
Sbjct: 157  FIKEE---DRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVL 213

Query: 1327 GDENVLLVKFAEESAEGNDFLSSSE----YRTIAKDGILVGLRRFCFFVFKDGGKEEKKK 1494
            GDEN+LLVKFAE+  + +    S++    Y  IA++GI VGLR++ FFVFKDGGKEEKKK
Sbjct: 214  GDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKK 273

Query: 1495 NPTSSAVKCYFVCKEANAFADMRGPYTSFTNHEARCLFMHVHTVSSVVKYMARFSLILSK 1674
            NPTSS VKCYFV  E++A +         T HEARC+FMH H VSSV KYMARFSLILSK
Sbjct: 274  NPTSS-VKCYFVFMESSALSGK-------TVHEARCIFMHAHMVSSVAKYMARFSLILSK 325

Query: 1675 TVQLDIDLASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGFISEDLAVNCPENMYK 1854
            TV+LD+DL++VNI+RI D P  D DG+ + +E+ +PLILTDGTGFISEDLA+ CP N+ +
Sbjct: 326  TVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCR 385

Query: 1855 LKFMCQRESEMVLDCGEKQGESSVLTQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKL 2034
             K+M    S++   C  +                 PLLIQ RLF+NG AVKGT L+N+KL
Sbjct: 386  GKYMNNGNSDV---CDSRY----------------PLLIQCRLFNNGCAVKGTLLLNRKL 426

Query: 2035 PPKTIQIRPSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTE 2214
            PP+TIQIRPSMIKVE DPKL  T + NS+EI  TS++PR+ SYLS+YLIALL+YGGVP E
Sbjct: 427  PPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRR-SYLSKYLIALLSYGGVPNE 485

Query: 2215 FFMELLVNALKDAQQVHSNKRAALSVSLRYGEMDDFLVPRMILSGIPLDEPYLKTRLSVI 2394
            +FM LL +AL+DA  V S+KRAAL VSLR+GEMDD +V RMILSGIP+DEP+L   LS +
Sbjct: 486  YFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFM 545

Query: 2395 MNEEXXXXXXXXXPINECYYLMGTADPTGRLKGDEVCIILDHGEVTGDVLVYRHPGLHFG 2574
            +NEE         P+N+C+YLMGTADPTG LK DEVCIILDHG+V G VLVY+HPGLHFG
Sbjct: 546  VNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFG 605

Query: 2575 DIHVLTATTVRGLKEIVGNSKYAIFFPTKRCRSLADEIAKGDFDGDMYWVSTNPQLLELY 2754
            DIHVL AT V  L+E VGN+KYAIFFP K  RSLADE+A  DFDGDMYWVS N QLL+ +
Sbjct: 606  DIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYF 665

Query: 2755 NPSEPWRRKHSTKSTFQPKPIGLSDNELEDILIQKFLTARFSSSNQIGSAADSWLAFMDR 2934
              SEPW RK ST+     +P   S +ELE  L Q FLT RF +S+ IG AAD+WL FMDR
Sbjct: 666  RASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDR 725

Query: 2935 LLTLGDECASEKQRLRDNMVHLVDIYYDSLDAPKTGKKVXXXXXXXXXXXXXXXXXXXXX 3114
            LLTL D+C+ EK+ L+  M+ L DIYYD+LDAPK+G KV                     
Sbjct: 726  LLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKV--------------------- 764

Query: 3115 XXXXXXXXXXXXXXQLKAEKFPHFMERQNRYCSKSVLGLIYDEVDLFRTTELQSNDAWKL 3294
                          +LKAEKFPHFM R++ Y S S+LG IYD V+ F+     + + W+L
Sbjct: 765  ----------NVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRL 814

Query: 3295 PCFREQVVPSS 3327
            P F    VP +
Sbjct: 815  PLFNIDAVPQA 825



 Score = 89.4 bits (220), Expect(2) = 0.0
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +3

Query: 3402 WQKLYVQYRAEMTSVMXXXXXXXXXXXXXXVIQKYKQILYGTTEFDDSTREKEVIYNEAL 3581
            W+  Y QYR+EM + +              VI KYKQILYG  EF++S R  E I++EAL
Sbjct: 830  WKDRYDQYRSEMAAALQHGGETKDEYAAE-VINKYKQILYGAAEFEESPRNLEDIFDEAL 888

Query: 3582 AIFHVTYDYAKTNG--VGKCNFVWKVAGRALCTLY 3680
            AI+HVTY++   NG  V  CNF W+VAGRALC LY
Sbjct: 889  AIYHVTYEFV-INGARVSYCNFPWRVAGRALCKLY 922


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  717 bits (1851), Expect(2) = 0.0
 Identities = 387/787 (49%), Positives = 512/787 (65%), Gaps = 6/787 (0%)
 Frame = +1

Query: 976  ENPGISNKPILEALEKLEFRKAFLILSYCGKMKLEDVVTVDLIQRLQNMPIRAFESELWR 1155
            EN G  + P L AL +LEF+KAFL+LSY    +L  V T D I+  +++P+ A+E+ +W 
Sbjct: 131  ENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEAAVWD 190

Query: 1156 VLGSKCTNENYEIDRRENEDWDSGRTYLYHCYVDPDATYRFKGPYLHKQRTHLQRVLGDE 1335
             LG +   +    DRR  + WDSG+T+ Y C+V PD +Y FKGP L    THL +VLGDE
Sbjct: 191  RLGRRYCPQT---DRRMLQ-WDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDE 246

Query: 1336 NVLLVKFAEESAEGNDFLSSS--EYRTIAKDGILVGLRRFCFFVFKDGGKEEKKKNPTSS 1509
            NVL VKFA+     + + +     Y+ IAK+GI++GLRR+ FFVFKDGGKEEKKK+ ++ 
Sbjct: 247  NVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTK 306

Query: 1510 AVKCYFVCKEANAFADMRGPY--TSFTNHEARCLFMHVHTVSSVVKYMARFSLILSKTVQ 1683
             VKCYF+  ++ A  DM  PY  T  + HEAR  FMHVH   ++  YMARFSLILSKT  
Sbjct: 307  KVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKT 366

Query: 1684 LDIDLASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGFISEDLAVNCPENMYKLKF 1863
            L++D+  +  + I DI C D DG  + ++  +P I +DGTG+ISEDLA  CP N++K K 
Sbjct: 367  LEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK- 425

Query: 1864 MCQRESEMVLDCGEKQGESSVLTQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKLPPK 2043
             C R   +   C +                +PPLLIQ R+F++G AVKGTFL+NKKL P+
Sbjct: 426  -CLRSENIQEACNQ----------------DPPLLIQFRMFYDGYAVKGTFLLNKKLCPR 468

Query: 2044 TIQIRPSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTEFFM 2223
            T+Q+RPSMIKV  DP L    + N+LE+V+TS+ PR+T  LS+ L+ALL+YGG+P EFF+
Sbjct: 469  TVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTK-LSKNLVALLSYGGIPNEFFL 527

Query: 2224 ELLVNALKDAQQVHSNKRAALSVSLRYGEMDDFLVPRMILSGIPLDEPYLKTRLSVIMNE 2403
            ++L+N L++++ +  NK AAL+V+L YGEMDD    +MIL GIPLDEP+LK  LS+++  
Sbjct: 528  DILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDEPHLKNHLSILLKT 587

Query: 2404 EXXXXXXXXXPINECYYLMGTADPTGRLKGDEVCIILDHGEVTGDVLVYRHPGLHFGDIH 2583
            E         P+ E YYLMGT DPTG LK DEVC+IL+ G+++G+VLVYR+PGLHFGDIH
Sbjct: 588  EKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIH 647

Query: 2584 VLTATTVRGLKEIVGNSKYAIFFPTKRCRSLADEIAKGDFDGDMYWVSTNPQLLELYNPS 2763
            +L AT V+ L+E VGNSKYA+FFP K  RSL DEIA GDFDGDMY++S NP+LLE + PS
Sbjct: 648  ILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPS 707

Query: 2764 EPW-RRKHSTKSTFQPKPIGLSDNELEDILIQKFLTARFSSSNQIGSAADSWLAFMDRLL 2940
            EPW      +KS     P  LS  ELE+ L + FL A F +SN IG AADSWL  MDRLL
Sbjct: 708  EPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLL 767

Query: 2941 TLGDECASEKQRLRDNMVHLVDIYYDSLDAPKTGKKVXXXXXXXXXXXXXXXXXXXXXXX 3120
             LGDE A EK  ++  M+ L+DIYYD+LDAPK G KV                       
Sbjct: 768  ILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKV----------------------- 804

Query: 3121 XXXXXXXXXXXXQLKAEKFPHFMERQNRYCSKSVLGLIYDEVDLFRTTE-LQSNDAWKLP 3297
                        +L+ + FPH+MER+ ++ S S+LGLIYD V    T E   S++  KLP
Sbjct: 805  --------YLPNELRPDIFPHYMEREKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLP 856

Query: 3298 CFREQVV 3318
            CF ++ V
Sbjct: 857  CFEDEPV 863



 Score = 81.6 bits (200), Expect(2) = 0.0
 Identities = 41/95 (43%), Positives = 53/95 (55%)
 Frame = +3

Query: 3396 DKWQKLYVQYRAEMTSVMXXXXXXXXXXXXXXVIQKYKQILYGTTEFDDSTREKEVIYNE 3575
            +K ++ Y  YR+EMT  M              VIQ+YKQ  YG   F+DS +  E +Y +
Sbjct: 869  EKCRRWYDNYRSEMTQAMKTDKDESANE----VIQRYKQEFYGAAGFEDSKKSLEELYPQ 924

Query: 3576 ALAIFHVTYDYAKTNGVGKCNFVWKVAGRALCTLY 3680
            AL ++ + YDYA   GV KC FVWKVAG  LC  Y
Sbjct: 925  ALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRFY 959


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  711 bits (1836), Expect(2) = 0.0
 Identities = 453/997 (45%), Positives = 577/997 (57%), Gaps = 36/997 (3%)
 Frame = +1

Query: 433  EVPLPLSMEKALRRIYEEKTMPPLDAKGRRKLAVLGEEAALRILQKF-----RSLSDYIT 597
            EV LP S+E+ L  I +    P  D +  R LA +GE AAL  L K      R+LS +I 
Sbjct: 57   EVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFIL 116

Query: 598  FVVGNLESRSSQGSVLFXXXXXXXXXXXXXXXXXGNLNSLELDEMRRETSLSSPSLATQK 777
             +V      S Q                              ++M R +   SPS +   
Sbjct: 117  HLVRKDSCASPQ------------------------------NKMVRVSPHQSPSSSCPV 146

Query: 778  QMNLNSTSLRRTSMSNGPLLASVPYENHSYTDNDVSDSLCM-QEQGRKQNLAXXXXXXRM 954
               L S S    S+   P   SV                C  Q  G  +N +        
Sbjct: 147  SQ-LQSPSTCSVSLHQSPSTFSV----------------CSGQGLGTAENAS-------- 181

Query: 955  NLNSARHENPGISNKPILE--------ALEKLEFRKAFLILSYCGKMKLEDVVTVDLIQR 1110
             L     E  G  +  +L+        AL +LEFRK  L                     
Sbjct: 182  -LQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKITL--------------------- 219

Query: 1111 LQNMPIRAFESELWRVLG----SKCTNENYEIDRRENEDWDSGRTYLYHCYVDPDATYRF 1278
            L+  P   + +++ R LG    S   +E+      +  DWD  +T++YHC+V  D + RF
Sbjct: 220  LKKRPWLLYGNQVERWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRF 279

Query: 1279 KGPYLHKQRTHLQRVLGDENVLLVKFAEESAE-------GNDFLSSSEYRTIAKDGILVG 1437
            KGP+L+  +THLQRVLGD+NVL+VKFAE+ ++       G  F +   Y  IA+DGIL+G
Sbjct: 280  KGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYA---YSKIARDGILLG 336

Query: 1438 LRRFCFFVFKDGGKEEKKKNPTSSAVKCYFVCKEANAFADMRGPY--TSFTNHEARCLFM 1611
            LRR+ FFVFKDGGKEEKKKNPT+SAVKCYFV  E++A+ D   PY  ++ T  EAR LFM
Sbjct: 337  LRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFM 396

Query: 1612 HVHTVSSVVKYMARFSLILSKTVQLDIDLASVNIERISDIPCLDPDGNSICNEEGEPLIL 1791
            H H VSS+  YMARFSLILSKT+ L IDL++VN++RI DIPC D  GN I  + G+PLI 
Sbjct: 397  HAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRD-GKPLIH 455

Query: 1792 TDGTGFISEDLAVNCPENMYK--------LKFMCQRESEMVLDCGEKQGESSVLTQQKYH 1947
            TDGTGFISEDLA+ CP N++K        LK + QR    +      Q ++  LT     
Sbjct: 456  TDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQR----IPAFEGFQNKTLQLTLPGLE 511

Query: 1948 LREPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTIQIRPSMIKVEADPKLLGTLSANSLEI 2127
            LREPPLLIQ RLF+NG+AVKGTFL+NK+LPP+TIQIR SMIKVE DP L    + NSLE+
Sbjct: 512  LREPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLEL 571

Query: 2128 VSTSSKPRKTSYLSRYLIALLNYGGVPTEFFMELLVNALKDAQQVHSNKRAALSVSLRYG 2307
            V TS+ P++T +LSR LIALLNYGGVP E+FM +LV+ALKD Q V S+KRAAL VS+  G
Sbjct: 572  VGTSNPPKRT-FLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNG 630

Query: 2308 EMDDFLVPRMILSGIPLDEPYLKTRLSVIMNEEXXXXXXXXXPINECYYLMGTADPTGRL 2487
            EMDDFLV RMIL+GIPLDE YL+ RLSV++ EE          + ECYYLMGT DPT  L
Sbjct: 631  EMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTL 690

Query: 2488 KGDEVCIILDHGEVTGDVLVYRHPGLHFGDIHVLTATTVRGLKEIVGNSKYAIFFPTKRC 2667
            +  EVC+IL +G++ G VLVYR+PGLHFGDIHVLTA  V  L  +VGN+KYAIFF +K  
Sbjct: 691  ESGEVCVILYNGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGP 750

Query: 2668 RSLADEIAKGDFDGDMYWVSTNPQLLELYNPSEPWRRKHSTKSTFQPKPIGLSDNELEDI 2847
            RS+ADEIA GDFDGDMYWVS N QLLE + P EPWR   ST+     KP   S +ELE+ 
Sbjct: 751  RSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENE 810

Query: 2848 LIQKFLTARFSSSNQIGSAADSWLAFMDRLLTLGDECASEKQRLRDNMVHLVDIYYDSLD 3027
            L + FL+ RF  S     AAD+WLA MD+ L LG+E   E+  +R  ++ L++IYYD+LD
Sbjct: 811  LFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALD 870

Query: 3028 APKTGKKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKAEKFPHFMER-QNR 3204
            APK G K                                     LKA   PHFMER +N 
Sbjct: 871  APKKGGK------------------------------KIEVPKHLKAGTLPHFMERGKNS 900

Query: 3205 YCSKSVLGLIYDEVDLFRTTELQSNDAWKLPCFREQV 3315
            Y S S+LG I+D  ++++  E+ + +  KLPCF E++
Sbjct: 901  YVSTSILGQIFDTANMYQ-EEVPNIEVQKLPCFEEEL 936



 Score = 84.7 bits (208), Expect(2) = 0.0
 Identities = 44/95 (46%), Positives = 53/95 (55%)
 Frame = +3

Query: 3399 KWQKLYVQYRAEMTSVMXXXXXXXXXXXXXXVIQKYKQILYGTTEFDDSTREKEVIYNEA 3578
            KW+ LY  YR +M   M               I+KYK+ILYG  E + S R  E +Y EA
Sbjct: 943  KWKFLYELYRKDMVDAMQLDPDAKNIAAEA-TIKKYKEILYGAEELEGSPRSNEEVYQEA 1001

Query: 3579 LAIFHVTYDYAKTNGVGKCNFVWKVAGRALCTLYA 3683
            LAI+ VTYD+A +  V  C F WKVAG AL  LYA
Sbjct: 1002 LAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYA 1036


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 953

 Score =  706 bits (1821), Expect(2) = 0.0
 Identities = 387/787 (49%), Positives = 516/787 (65%), Gaps = 13/787 (1%)
 Frame = +1

Query: 1003 ILEALEKLEFRKAFLILSYCGKMKLEDVVTVDLIQRLQNMPIRAFESELWRVLGSKCTNE 1182
            +L AL +LEFRKAFLILSY G+  LE+ +T   I+ L+++P+  FE  +W   G KC   
Sbjct: 88   LLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCI-- 145

Query: 1183 NYEIDRRENEDWDSGRTYLYHCYVDPDATYRFKGPYLHKQRTHLQRVLGDENVLLVKFAE 1362
             Y+   R+  +W+SGRT++Y C+V PD   RFKGP L   RTHLQ+ LGD+NVLLVKFAE
Sbjct: 146  -YDQSDRQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAE 204

Query: 1363 ESAEGNDFLSSSE-----YRTIAKDGILVGLRRFCFFVFKDGGKEEKKKNPTSSAVKCYF 1527
            + + G +F + +E     Y    K+GI VGLR + FFVFKDGG EEK+K+PTSS VKCYF
Sbjct: 205  DGS-GKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYF 263

Query: 1528 VCKEANAFADMRGPY--TSFTNHEARCLFMHVHTV-SSVVKYMARFSLILSKTVQLDIDL 1698
            V  ++   AD    Y  ++ T  EAR LFMH H +  ++ KYMARFSLILSKT++L+IDL
Sbjct: 264  VRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDL 323

Query: 1699 ASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGFISEDLAVNCPENMYK---LKFMC 1869
             +V++++I D  C D +GN + + E +P ILTDGTGFIS DLA+ CP N+YK   L+  C
Sbjct: 324  TTVSVQKIPDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLALLCPNNVYKGSNLENNC 382

Query: 1870 QRESEMVLDCGEKQGESSVLTQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTI 2049
             +E   +++  +         Q   H  EPPLLIQ RLFH G A+KGT LVN+KLPP+TI
Sbjct: 383  IQEINNLVELEDMSNAMGEAEQLSTH--EPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTI 440

Query: 2050 QIRPSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTEFFMEL 2229
            Q+RPSMIKVE DP +    S NSLE+V+TS+KP++  YLS++LIALL++GGVP EFFM+L
Sbjct: 441  QVRPSMIKVEKDPSV-HMQSINSLEVVTTSNKPKR-GYLSKHLIALLSFGGVPNEFFMDL 498

Query: 2230 LVNALKDAQQVHSNKRAALSVSLRYGEMDDFLVPRMILSGIPLDEPYLKTRLSVIMNEEX 2409
            L + ++DA  V+SNKR+AL  S+  GE D++    MIL GIPLDEP+LK  LS    EE 
Sbjct: 499  LRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEK 558

Query: 2410 XXXXXXXXPINECYYLMGTADPTGRLKGDEVCIILDHGEVTGDVLVYRHPGLHFGDIHVL 2589
                     + +C+YLMGT DPTG LK ++VCII ++ ++ GDVLVYR+PGLHFGDIH +
Sbjct: 559  KKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKM 618

Query: 2590 TATTVRGLKEIVGNSKYAIFFPTKRCRSLADEIAKGDFDGDMYWVSTNPQLLELYNPSEP 2769
             AT V+ L+  VG+SKY IFFP    RS+ADEIA GDFDGD YWVS +PQLL+ +   +P
Sbjct: 619  DATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDP 678

Query: 2770 WRRKHSTKSTFQPKPIGLSDNELEDILIQKFLTARFSSSNQIGSAADSWLAFMDRLLTLG 2949
            W        +   KP   S  ELE+ L + FL  RF  S  +G + +SW+A MDRLLTL 
Sbjct: 679  WIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTL- 737

Query: 2950 DECA--SEKQRLRDNMVHLVDIYYDSLDAPKTGKKVXXXXXXXXXXXXXXXXXXXXXXXX 3123
            + C   +EK+R+++NM+ L+DIYY++LDAPK+G+KV                        
Sbjct: 738  NNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKV------------------------ 773

Query: 3124 XXXXXXXXXXXQLKAEKFPHFMERQNRYCSKSVLGLIYDEVDLFRTTELQSNDAWKLPCF 3303
                        L AE FPH+ME+   + S S+LGLIYDEV+++   ++   + WKLPCF
Sbjct: 774  -------QVPNDLIAELFPHYMEKDKSFTSTSILGLIYDEVEIWLENDM-VGEIWKLPCF 825

Query: 3304 REQVVPS 3324
              +V PS
Sbjct: 826  DVEVPPS 832



 Score = 68.2 bits (165), Expect(2) = 0.0
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
 Frame = +3

Query: 3396 DKWQKLYVQYRAEMTSVMXXXXXXXXXXXXXXVIQKYKQILYG-TTEFDDSTREKEVIYN 3572
            +KW+  Y +YR +MT  +              V +KYK+  YG T E +   +    I+N
Sbjct: 835  EKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFN 894

Query: 3573 EALAIFHVTYDYAK-TNGVGKCNFVWKVAGRALCTLY 3680
            EALA+++V+Y+YA     V +C F WK+AG AL  LY
Sbjct: 895  EALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLY 931