BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007828
         (2195 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   116   7e-57
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               100   2e-55
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   115   3e-55
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   108   1e-54
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   100   6e-52

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  116 bits (291), Expect(3) = 7e-57
 Identities = 56/144 (38%), Positives = 89/144 (61%)
 Frame = -2

Query: 2194 KNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAVMQSFFELIGLKLNVNKTSLL 2015
            K I+YH +CR + +THL FADD+++   G + S++   A+ + F  +  LK+++ K+++ 
Sbjct: 832  KKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIF 891

Query: 2014 TGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYKDCLPLIEEISIRMADWKNKT 1835
               +SP A   +      +L + P+KYLGLPL   R+   D LPL+E+I  R+  W N+ 
Sbjct: 892  MAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRF 951

Query: 1834 LSLAGRLQLIQSILSSFHHIGLKL 1763
            LS AGRLQLI+S+LSS  +  L +
Sbjct: 952  LSFAGRLQLIKSVLSSITNFWLSV 975



 Score = 83.2 bits (204), Expect(3) = 7e-57
 Identities = 72/285 (25%), Positives = 112/285 (39%), Gaps = 17/285 (5%)
 Frame = -2

Query: 1465 IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCE--SMXXXXXXXXXXXXXXLDDARVA 1292
            +WR ILK R  A  F +  + +   TS WH+ WC    +               ++A VA
Sbjct: 1076 LWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVA 1135

Query: 1291 ELITNGQWNGKIHSLPDF--EVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXT---YM 1127
            E++   +   +     DF  ++K  I           D  +W            +   + 
Sbjct: 1136 EVMNTHR---RKRHRADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQ 1192

Query: 1126 NLRRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHR 947
             +R I  +  WY+ VW     PK+SF+ W  F   L+T D++ K N   +  C  C    
Sbjct: 1193 QIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEEL 1252

Query: 946  ENLSHLFFDCPFSKEVWSNFKRHV--GMDIT--------VLTSKQEWYRTFRRTTRSNSC 797
            E   HLFF CP+S  VW +  + +  G +I         +L S + +   F         
Sbjct: 1253 ETRDHLFFSCPYSSHVWFSLTKGLLNGRNILNWNLITPHLLDSSRPYLHVF--------- 1303

Query: 796  DSEIIRAMICAVVYVLWNERNSRRFKNKEHTPAQVMSGTLRKTKL 662
                +R    A ++ LW ERN RR   +   PA  ++    KT L
Sbjct: 1304 ---TLRYAFQASIHSLWRERNCRR-HGETAIPAAKLAKFTDKTML 1344



 Score = 70.9 bits (172), Expect(3) = 7e-57
 Identities = 30/100 (30%), Positives = 60/100 (60%)
 Frame = -1

Query: 1787 ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 1608
            I+++W   F LP   +++I ++ + FLW+GP++N    K +   +   K EGGL +   K
Sbjct: 968  ITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLK 1027

Query: 1607 TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 1488
              N  S   LI++++   ++LW KW+ ++ +R ++FW+++
Sbjct: 1028 EANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVK 1067


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  100 bits (248), Expect(3) = 2e-55
 Identities = 49/136 (36%), Positives = 80/136 (58%)
 Frame = -2

Query: 2194 KNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAVMQSFFELIGLKLNVNKTSLL 2015
            +   +H KC+R+ +THL FADD+++L  G+  S+E +  V   F +  GL++++ K++L 
Sbjct: 332  RKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLY 391

Query: 2014 TGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYKDCLPLIEEISIRMADWKNKT 1835
               +SP    ++A      +   P++YLGLPL   R+   D  PL+E+I  R+A W  + 
Sbjct: 392  MAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRF 451

Query: 1834 LSLAGRLQLIQSILSS 1787
             S AGR  LI+S+L S
Sbjct: 452  FSFAGRFNLIKSVLWS 467



 Score = 90.1 bits (222), Expect(3) = 2e-55
 Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 7/274 (2%)
 Frame = -2

Query: 1465 IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCES--MXXXXXXXXXXXXXXLDDARVA 1292
            IWR ILK R  A  F +  + N +  S W++ W     +                +A VA
Sbjct: 576  IWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVA 635

Query: 1291 ELITNGQWNGKIHSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXT---YMNL 1121
            +  T         SL + E++ ++    I     ED V+W            T   +  +
Sbjct: 636  DAWTRRSRRRHRTSLLN-EIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLI 694

Query: 1120 RRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQ--SLCCLCRNHR 947
            +   + V W+K VW +   PK++   W      L T DR++K N        C LC N+ 
Sbjct: 695  KATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNS 754

Query: 946  ENLSHLFFDCPFSKEVWSNFKRHVGMDITVLTSKQEWYRTFRRTTRSNSCDSEIIRAMIC 767
            + L HLFF C ++  VW+   +  G+  T  +++     T   T   +  +  + R +  
Sbjct: 755  KTLEHLFFSCSYASTVWAALAK--GIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQ 812

Query: 766  AVVYVLWNERNSRRFKNKEHTPAQVMSGTLRKTK 665
            A +Y +W ERN RR     +TPA V+    ++T+
Sbjct: 813  ATIYHVWRERNGRRHDAAPNTPATVIGWIDKQTR 846



 Score = 75.5 bits (184), Expect(3) = 2e-55
 Identities = 34/100 (34%), Positives = 57/100 (57%)
 Frame = -1

Query: 1787 ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 1608
            I ++W   F LP   +++I +L + FLW+G  M+    K S   +   K EGGL + + K
Sbjct: 468  ICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLK 527

Query: 1607 TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 1488
              N  S   L+++++    +LWTKW+ EY +R KS W+++
Sbjct: 528  EANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLK 567


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  115 bits (287), Expect(3) = 3e-55
 Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 6/289 (2%)
 Frame = -2

Query: 1462 WRSILKHRKTAVRFIKYVIVNRKETSLWHEPWC--ESMXXXXXXXXXXXXXXLDDARVAE 1289
            W  ILK R  A   +KY+I +   TSLW + W     +                +A+V  
Sbjct: 217  WGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNV 276

Query: 1288 LITNGQWNGKI-HSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXTYMNLRRI 1112
            LI N +W      ++    +   I       + ++D +VW             +  LRR 
Sbjct: 277  LIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRH 336

Query: 1111 RNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHRENLSH 932
            R  V+W+ +VW K  VP+HSF++W      L+TQD+L +  I   + C LC  + E+ +H
Sbjct: 337  RQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNH 396

Query: 931  LFFDCPFSKEVWSNFKRHVGMDITVLTSK-QEWYRTFRRTTRSNSCDSEIIRAMICAVVY 755
            LFF+C ++K +W +       DI  +T    EW R    +    S  +   +    A VY
Sbjct: 397  LFFECSYTKAIWWDVCDR--CDIPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVY 454

Query: 754  VLWNERNSRRFKNKEHTPAQVMS--GTLRKTKLYLQKELKEVPDNVDTR 614
             +W ERN+R F     TP  V++    + + KL L + +  VP N +TR
Sbjct: 455  HVWQERNARIFAGMSRTPNLVLNQIECIIRDKLDLMRNV--VPTNENTR 501



 Score = 83.2 bits (204), Expect(3) = 3e-55
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = -1

Query: 1796 LVLISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNII 1617
            L  I  YW   F+LP  V+K + Q+   FLW+G +M     K +   +   K EGGL I 
Sbjct: 105  LFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIK 164

Query: 1616 DTKTWNIASYCGLIYKVVKKEE-TLWTKWIWEYQLRGKSFWTMRIPFDCSW 1467
              K WN  +    I+ +    + ++W+ WI    LRG++FWT++ P +CSW
Sbjct: 165  SIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSW 215



 Score = 67.0 bits (162), Expect(3) = 3e-55
 Identities = 36/100 (36%), Positives = 58/100 (58%)
 Frame = -2

Query: 2086 VKAVMQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAAR 1907
            ++ V+  F +L GL  N NK+ +    +  A    +  ILG +    P+KYLG+PL ++R
Sbjct: 8    IRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSR 67

Query: 1906 IGYKDCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSS 1787
            +    C  L++ I+ ++  W  +TLS AGR+QLI S+L S
Sbjct: 68   LKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFS 107


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  108 bits (269), Expect(3) = 1e-54
 Identities = 52/136 (38%), Positives = 83/136 (61%)
 Frame = -2

Query: 2194 KNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAVMQSFFELIGLKLNVNKTSLL 2015
            ++  YH KC+ + +THL FADD+++L  G+  S+ER+  V   F +  GL++++ K+++ 
Sbjct: 685  RHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVY 744

Query: 2014 TGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYKDCLPLIEEISIRMADWKNKT 1835
               LS  A  ++A          P++YLGLPL   R+   DCLPL+E++  R+  W ++ 
Sbjct: 745  LAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRF 804

Query: 1834 LSLAGRLQLIQSILSS 1787
            LS AGRL LI S+L S
Sbjct: 805  LSYAGRLNLISSVLWS 820



 Score = 86.3 bits (212), Expect(3) = 1e-54
 Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 7/266 (2%)
 Frame = -2

Query: 1465 IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCESMXXXXXXXXXXXXXXLDDAR--VA 1292
            IW+ +LK+R+ A    K  + N K+TS W++ W +                    R  V 
Sbjct: 929  IWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVE 988

Query: 1291 ELITNGQWNGKIHSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXT---YMNL 1121
            E  TN +     + + +     L    + ++   ED V+W            T   + + 
Sbjct: 989  EAWTNRRQRRHRNDVYNVIEDALKKSWDTRT-ETEDKVLWRGKSDVFRTTFSTRDTWHHT 1047

Query: 1120 RRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHREN 941
            R    +V W+K++W     PK+SF  W    G L T DR+I       + C  C+   E 
Sbjct: 1048 RSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLET 1107

Query: 940  LSHLFFDCPFSKEVWSNFKRHVGMDITVLTSKQEWYRTFRRTTRSNSCDSE--IIRAMIC 767
              HLFF C F+  +W +  R  G+  T  TS   W       T S     E  + R +  
Sbjct: 1108 RDHLFFTCSFTSVIWVDLAR--GIFKTQYTS--HWQSIIEAITNSQHHRVEWFLRRYVFQ 1163

Query: 766  AVVYVLWNERNSRRFKNKEHTPAQVM 689
            A +Y++W ERN RR     +T +Q++
Sbjct: 1164 ATIYIVWRERNGRRHGEPPNTASQLV 1189



 Score = 68.6 bits (166), Expect(3) = 1e-54
 Identities = 32/100 (32%), Positives = 53/100 (53%)
 Frame = -1

Query: 1787 ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 1608
            I ++W   F LP   ++++ ++ + FLW+G  MN    K S   +   K EGGL +   K
Sbjct: 821  ICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLK 880

Query: 1607 TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 1488
              N      L++K+V    +LW KW+ ++ LR  SFW ++
Sbjct: 881  EANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  100 bits (248), Expect(3) = 6e-52
 Identities = 52/136 (38%), Positives = 79/136 (58%)
 Frame = -2

Query: 2194 KNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAVMQSFFELIGLKLNVNKTSLL 2015
            K   +H KC+ + +THL FADD+++L  G+  S++ +  VM  F +  GL++N+ KT+L 
Sbjct: 90   KRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLY 149

Query: 2014 TGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYKDCLPLIEEISIRMADWKNKT 1835
            T  +S      +       L   P++YLGLPL   R+  +D  PL E+I  R+  W ++ 
Sbjct: 150  TAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRY 209

Query: 1834 LSLAGRLQLIQSILSS 1787
            LS AGRL LI S+L S
Sbjct: 210  LSFAGRLNLISSVLWS 225



 Score = 83.6 bits (205), Expect(3) = 6e-52
 Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 6/266 (2%)
 Frame = -2

Query: 1465 IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCES--MXXXXXXXXXXXXXXLDDARVA 1292
            +W+ +LK+R+TA  F +  + N   TS W + W     +                +  VA
Sbjct: 334  MWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVA 393

Query: 1291 ELITNGQWNG-KIHSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXT---YMN 1124
            E  +N +    +   L D E   L    + ++L++ED  +W            T   +  
Sbjct: 394  EAWSNRRRRKHRTEQLNDIEAA-LNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQ 452

Query: 1123 LRRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHRE 944
            +R+  N+V WYK VW     PK+ F  W      LST  R+   N      C  C    E
Sbjct: 453  VRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIE 512

Query: 943  NLSHLFFDCPFSKEVWSNFKRHVGMDITVLTSKQEWYRTFRRTTRSNSCDSEIIRAMICA 764
               HLFF C ++  +W+   ++V       ++  +    +   T+++   S + R +   
Sbjct: 513  TRDHLFFSCSYASAIWTAIAKNVLQH--RFSTDWQTIVNYISETQTDRIRSFLSRYIFQL 570

Query: 763  VVYVLWNERNSRRFKNKEHTPAQVMS 686
             V+ +W ERN RR   +  T A ++S
Sbjct: 571  TVHTVWKERNDRRHGEEPRTSANLIS 596



 Score = 70.5 bits (171), Expect(3) = 6e-52
 Identities = 31/97 (31%), Positives = 54/97 (55%)
 Frame = -1

Query: 1781 SYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTKTW 1602
            ++W   F LP   +K+I+ + + FLW+GP +++   K S   +   K EGGL +      
Sbjct: 228  NFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEA 287

Query: 1601 NIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTM 1491
            N+ S   LI++V   +++LW KW     L+ +SFW++
Sbjct: 288  NVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324