BLASTX nr result
ID: Coptis24_contig00007826
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007826
(833 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]... 86 3e-18
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo... 79 8e-18
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g... 79 8e-18
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz... 79 8e-18
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein... 83 2e-17
>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| PAF1 complex component
[Populus trichocarpa]
Length = 662
Score = 70.1 bits (170), Expect(2) = 3e-18
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -3
Query: 408 GFRKGYMGGKQRIEATIGRKVPENDGKRHALTLTVSDNKRRRGLL 274
G + G+M KQRIEAT+G +VPENDG+RHALTLTV D KRRRGLL
Sbjct: 618 GAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYKRRRGLL 662
Score = 48.1 bits (113), Expect(2) = 3e-18
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -2
Query: 511 KLVDTNAPVDQGTVSNSLHSSQLEISLDNFEAVAGIPQG 395
KLVDT+APVDQGT SN++HS +LEISL + G PQG
Sbjct: 581 KLVDTSAPVDQGTESNTMHSFELEISLIALQEFGG-PQG 618
Score = 85.9 bits (211), Expect = 1e-14
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = -3
Query: 828 KAVRLVEMNKKKRAENFKMAFEKKAINTGLREGEEGYDPFSRGWTRSRNYYVSNTA 661
KA+RL EMN+K R ENF+ A E K +NTGL+ GE GYDPFSR WTRSRNYYVS A
Sbjct: 476 KAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPA 531
>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
Length = 653
Score = 70.9 bits (172), Expect(2) = 8e-18
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = -3
Query: 408 GFRKGYMGGKQRIEATIGRKVPENDGKRHALTLTVSDNKRRRGLL 274
G GYM KQ+IEAT+G KVP+NDG+RHALTLTVSD KRRRGLL
Sbjct: 609 GLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 653
Score = 45.8 bits (107), Expect(2) = 8e-18
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 511 KLVDTNAPVDQGTVSNSLHSSQLEISLDNFEAVAGIPQGIY 389
KLVDTNAPVD GT SN LH+ +L ISL E G P+G++
Sbjct: 572 KLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGG-PKGLF 611
Score = 79.3 bits (194), Expect = 1e-12
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = -3
Query: 828 KAVRLVEMNKKKRAENFKMAFEKKAINTGLREGEEGYDPFSRGWTRSRNYYVSNTAG 658
KA +L MNKK RAENFK A E K +NT L+ GE GYDPFSR WTRSRNYY + G
Sbjct: 473 KAAKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG 529
>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
gi|113649443|dbj|BAF29955.1| Os12g0535900, partial
[Oryza sativa Japonica Group]
Length = 599
Score = 70.9 bits (172), Expect(2) = 8e-18
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = -3
Query: 408 GFRKGYMGGKQRIEATIGRKVPENDGKRHALTLTVSDNKRRRGLL 274
G GYM KQ+IEAT+G KVP+NDG+RHALTLTVSD KRRRGLL
Sbjct: 555 GLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 599
Score = 45.8 bits (107), Expect(2) = 8e-18
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 511 KLVDTNAPVDQGTVSNSLHSSQLEISLDNFEAVAGIPQGIY 389
KLVDTNAPVD GT SN LH+ +L ISL E G P+G++
Sbjct: 518 KLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGG-PKGLF 557
Score = 79.3 bits (194), Expect = 1e-12
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = -3
Query: 828 KAVRLVEMNKKKRAENFKMAFEKKAINTGLREGEEGYDPFSRGWTRSRNYYVSNTAG 658
KA +L MNKK RAENFK A E K +NT L+ GE GYDPFSR WTRSRNYY + G
Sbjct: 419 KAAKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG 475
>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
containing protein, expressed [Oryza sativa Japonica
Group] gi|215697432|dbj|BAG91426.1| unnamed protein
product [Oryza sativa Japonica Group]
Length = 522
Score = 70.9 bits (172), Expect(2) = 8e-18
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = -3
Query: 408 GFRKGYMGGKQRIEATIGRKVPENDGKRHALTLTVSDNKRRRGLL 274
G GYM KQ+IEAT+G KVP+NDG+RHALTLTVSD KRRRGLL
Sbjct: 478 GLFDGYMARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 522
Score = 45.8 bits (107), Expect(2) = 8e-18
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 511 KLVDTNAPVDQGTVSNSLHSSQLEISLDNFEAVAGIPQGIY 389
KLVDTNAPVD GT SN LH+ +L ISL E G P+G++
Sbjct: 441 KLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGG-PKGLF 480
Score = 79.3 bits (194), Expect = 1e-12
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = -3
Query: 828 KAVRLVEMNKKKRAENFKMAFEKKAINTGLREGEEGYDPFSRGWTRSRNYYVSNTAG 658
KA +L MNKK RAENFK A E K +NT L+ GE GYDPFSR WTRSRNYY + G
Sbjct: 342 KAAKLEAMNKKNRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG 398
>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
[Brachypodium distachyon]
Length = 658
Score = 69.7 bits (169), Expect(2) = 2e-17
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 408 GFRKGYMGGKQRIEATIGRKVPENDGKRHALTLTVSDNKRRRGLL 274
G +GYM KQ+IEAT+G K+P+NDG+RHALTL+VSD KRRRGLL
Sbjct: 614 GLFEGYMARKQKIEATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 658
Score = 45.8 bits (107), Expect(2) = 2e-17
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -2
Query: 511 KLVDTNAPVDQGTVSNSLHSSQLEISLDNFEAVAGIPQGIY 389
KLVDTNAP+D GT +NSLH+ +L ISL E G P+G++
Sbjct: 577 KLVDTNAPLDLGTETNSLHNFELPISLSVLEEYGG-PKGLF 616
Score = 83.2 bits (204), Expect = 7e-14
Identities = 38/57 (66%), Positives = 43/57 (75%)
Frame = -3
Query: 828 KAVRLVEMNKKKRAENFKMAFEKKAINTGLREGEEGYDPFSRGWTRSRNYYVSNTAG 658
KA +L EMN+K RAENFK A E KA+NT L+ GE GYDPFSR WTRSRNYY + G
Sbjct: 474 KAAKLEEMNRKNRAENFKTASEMKAVNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEG 530