BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007824
         (1683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001239810.1| uncharacterized protein LOC100789793 [Glycin...   633   e-179
ref|XP_003554035.1| PREDICTED: U5 small nuclear ribonucleoprotei...   632   e-179
ref|XP_002277631.1| PREDICTED: U5 small nuclear ribonucleoprotei...   621   e-175
ref|XP_003624685.1| U5 snRNP-specific protein-like factor [Medic...   620   e-175
ref|XP_002326058.1| predicted protein [Populus trichocarpa] gi|2...   619   e-174

>ref|NP_001239810.1| uncharacterized protein LOC100789793 [Glycine max]
            gi|255645285|gb|ACU23139.1| unknown [Glycine max]
          Length = 345

 Score =  633 bits (1632), Expect = e-179
 Identities = 295/345 (85%), Positives = 316/345 (91%)
 Frame = +1

Query: 376  MQAVSREDQNALSAVGPRPMEWSTVPYSAPQAPSPNGKLRTSSLESPIMLLEGHQSAVYT 555
            MQ  S E ++ALS VGPRPMEWSTVPY+APQAP PNGK RTSSLESPIMLL GHQSA+YT
Sbjct: 1    MQVFSIEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 556  MKFNPAGSVVASGSHDREIFLWYVQGDCKNFMVLKGHKNAVLDLQWTTDGSQIISASADK 735
            MKFNPAGSV+ASGSHDREIFLW V GDCKNFMVLKGHKNAVLDL WTTDG+QI+SAS DK
Sbjct: 61   MKFNPAGSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 736  TLRAWDVETGAQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFP 915
            T+RAWDVETG Q+KKMVEH S+VNSCCPSRRGPPLVVSGSDDGTAKLWD+R RG+IQTFP
Sbjct: 121  TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 916  DKYQITAVSFSDASDKIFTGGIDNDIKVWDLRRNEVSMTLQGHSDTITGMQLSPDGSYLL 1095
            DKYQITAV FSDASDKIFTGGIDND+K+WDLR+ EV+MTLQGH D IT MQLSPDGSYLL
Sbjct: 181  DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITDMQLSPDGSYLL 240

Query: 1096 SNAMDCSLRIWDLRPYAPQNRCVKIFSGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYI 1275
            +N MDC L IWD+RPYAPQNRCVK+  GHQHNFEKNLLKCGWSPDGSKVTAGS+DRMVYI
Sbjct: 241  TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 1276 WDTTSRRILYRLPGHTGSVNESAFHPTEPIIGSCSSDKQIYLGEI 1410
            WDTTSRRILY+LPGH GSVNE  FHP EPIIGSCSSDKQIYLGEI
Sbjct: 301  WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345


>ref|XP_003554035.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like
            isoform 1 [Glycine max] gi|356571750|ref|XP_003554036.1|
            PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa
            protein-like isoform 2 [Glycine max]
            gi|356571752|ref|XP_003554037.1| PREDICTED: U5 small
            nuclear ribonucleoprotein 40 kDa protein-like isoform 3
            [Glycine max]
          Length = 345

 Score =  632 bits (1631), Expect = e-179
 Identities = 295/345 (85%), Positives = 315/345 (91%)
 Frame = +1

Query: 376  MQAVSREDQNALSAVGPRPMEWSTVPYSAPQAPSPNGKLRTSSLESPIMLLEGHQSAVYT 555
            MQ    E ++ALS VGPRPMEWSTVPY+APQAP PNGK RTSSLESPIMLL GHQSA+YT
Sbjct: 1    MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT 60

Query: 556  MKFNPAGSVVASGSHDREIFLWYVQGDCKNFMVLKGHKNAVLDLQWTTDGSQIISASADK 735
            MKFNPAGSVVASGSHDREIFLW V GDCKNFMVLKGHKNAVLDL WTTDG+QI+SAS DK
Sbjct: 61   MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK 120

Query: 736  TLRAWDVETGAQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFP 915
            T+RAWDVETG Q+KKMVEH S+VNSCCPSRRGPPLVVSGSDDGTAKLWD+R RG+IQTFP
Sbjct: 121  TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 916  DKYQITAVSFSDASDKIFTGGIDNDIKVWDLRRNEVSMTLQGHSDTITGMQLSPDGSYLL 1095
            DKYQITAV FSDASDKIFTGGIDND+K+WDLR+ EV+MTLQGH D IT MQLSPDGSYLL
Sbjct: 181  DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLL 240

Query: 1096 SNAMDCSLRIWDLRPYAPQNRCVKIFSGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYI 1275
            +N MDC L IWD+RPYAPQNRCVK+  GHQHNFEKNLLKCGWSPDGSKVTAGS+DRMVYI
Sbjct: 241  TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 1276 WDTTSRRILYRLPGHTGSVNESAFHPTEPIIGSCSSDKQIYLGEI 1410
            WDTTSRRILY+LPGH GSVNE  FHP EPIIGSCSSDKQIYLGEI
Sbjct: 301  WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345


>ref|XP_002277631.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like
            [Vitis vinifera]
          Length = 344

 Score =  621 bits (1602), Expect = e-175
 Identities = 293/338 (86%), Positives = 312/338 (92%), Gaps = 1/338 (0%)
 Frame = +1

Query: 400  QNALSAVGPRP-MEWSTVPYSAPQAPSPNGKLRTSSLESPIMLLEGHQSAVYTMKFNPAG 576
            +NALS VGPRP ME S VP + P+AP  NGK RTSSLESPIMLL GHQSA+YTMKFNP G
Sbjct: 7    ENALSVVGPRPGMELSAVPCTGPRAPGANGKQRTSSLESPIMLLAGHQSAIYTMKFNPTG 66

Query: 577  SVVASGSHDREIFLWYVQGDCKNFMVLKGHKNAVLDLQWTTDGSQIISASADKTLRAWDV 756
            +V+ASGSH+REIFLWYV GDCKNFMVLKGHKNA+LDLQWTTDG+QIISAS DKTLRAWDV
Sbjct: 67   TVIASGSHEREIFLWYVHGDCKNFMVLKGHKNAILDLQWTTDGTQIISASPDKTLRAWDV 126

Query: 757  ETGAQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFPDKYQITA 936
            ETG Q+KKM EHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWD+R RGAIQTFPDKYQITA
Sbjct: 127  ETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA 186

Query: 937  VSFSDASDKIFTGGIDNDIKVWDLRRNEVSMTLQGHSDTITGMQLSPDGSYLLSNAMDCS 1116
            VSFSDASDKIFTGGIDND+KVWDLRRNEV+MTLQGH D ITGMQLSPDGSYLL+N MDC 
Sbjct: 187  VSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHQDMITGMQLSPDGSYLLTNGMDCK 246

Query: 1117 LRIWDLRPYAPQNRCVKIFSGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYIWDTTSRR 1296
            L IWD+RPYAPQNRCVKI  GHQHNFEKNLLKC WSPDGSKVTAGS+DRMVYIWDTTSRR
Sbjct: 247  LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRR 306

Query: 1297 ILYRLPGHTGSVNESAFHPTEPIIGSCSSDKQIYLGEI 1410
            ILY+LPGHTGSVNE  FHP+EPI+GSCSSDKQIYLGEI
Sbjct: 307  ILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344


>ref|XP_003624685.1| U5 snRNP-specific protein-like factor [Medicago truncatula]
            gi|355499700|gb|AES80903.1| U5 snRNP-specific
            protein-like factor [Medicago truncatula]
          Length = 345

 Score =  620 bits (1599), Expect = e-175
 Identities = 289/345 (83%), Positives = 313/345 (90%)
 Frame = +1

Query: 376  MQAVSREDQNALSAVGPRPMEWSTVPYSAPQAPSPNGKLRTSSLESPIMLLEGHQSAVYT 555
            MQ    E+++ALS VG +PMEWSTVPY+AP+AP PNGK RTSSLESPIMLL GHQSAVYT
Sbjct: 1    MQGFPGENEHALSVVGSKPMEWSTVPYNAPRAPGPNGKQRTSSLESPIMLLTGHQSAVYT 60

Query: 556  MKFNPAGSVVASGSHDREIFLWYVQGDCKNFMVLKGHKNAVLDLQWTTDGSQIISASADK 735
            MKFNP GSVVASGSHD+EIFLW V GDCKNFMVLKGHKNAVLDL WT+DG+QIISAS DK
Sbjct: 61   MKFNPTGSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIISASPDK 120

Query: 736  TLRAWDVETGAQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFP 915
            TLR WD ETG Q+KKMVEH S+VNSCCP+RRGPPLVVSGSDDGTAKLWD+R RG+IQTFP
Sbjct: 121  TLRLWDTETGKQIKKMVEHLSYVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP 180

Query: 916  DKYQITAVSFSDASDKIFTGGIDNDIKVWDLRRNEVSMTLQGHSDTITGMQLSPDGSYLL 1095
            DKYQITAVSFSDASDKI+TGGIDND+K+WDLR+ EV+MTLQGH D IT MQLSPDGSYLL
Sbjct: 181  DKYQITAVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLL 240

Query: 1096 SNAMDCSLRIWDLRPYAPQNRCVKIFSGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYI 1275
            +N MDC L IWD+RPYAPQNRCVKI  GHQHNFEKNLLKCGWSPDGSKVTAGS+DRMVYI
Sbjct: 241  TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 300

Query: 1276 WDTTSRRILYRLPGHTGSVNESAFHPTEPIIGSCSSDKQIYLGEI 1410
            WDTTSRRILY+LPGH GSVNE  FHP EPI+GSCSSDKQIYLGEI
Sbjct: 301  WDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 345


>ref|XP_002326058.1| predicted protein [Populus trichocarpa] gi|222862933|gb|EEF00440.1|
            predicted protein [Populus trichocarpa]
          Length = 345

 Score =  619 bits (1595), Expect = e-174
 Identities = 289/345 (83%), Positives = 312/345 (90%)
 Frame = +1

Query: 376  MQAVSREDQNALSAVGPRPMEWSTVPYSAPQAPSPNGKLRTSSLESPIMLLEGHQSAVYT 555
            MQ V RE ++ALS  GPRPMEWSTVPY+  Q P  NGK R SSLESPIMLL GHQSA+YT
Sbjct: 1    MQVVPRESESALSVSGPRPMEWSTVPYTGSQGPGHNGKQRRSSLESPIMLLTGHQSAIYT 60

Query: 556  MKFNPAGSVVASGSHDREIFLWYVQGDCKNFMVLKGHKNAVLDLQWTTDGSQIISASADK 735
            MKFNPAG+V+ASGSHD+EIFLWY+ G+CKNFMV++GHKNAVLDL WT DGSQIISAS DK
Sbjct: 61   MKFNPAGNVIASGSHDKEIFLWYMHGECKNFMVMRGHKNAVLDLHWTADGSQIISASPDK 120

Query: 736  TLRAWDVETGAQVKKMVEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFP 915
            T+RAWDVETG Q+KKM EHSSFVNSCCPSRRGPPLVVSGSDDGT+KLWDLR +GAIQTFP
Sbjct: 121  TVRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTSKLWDLRQKGAIQTFP 180

Query: 916  DKYQITAVSFSDASDKIFTGGIDNDIKVWDLRRNEVSMTLQGHSDTITGMQLSPDGSYLL 1095
            DKYQITAVSFSDASDKIFTGGIDND+KVWD+R+ EV+MTL+GH D IT MQLSPDGSYLL
Sbjct: 181  DKYQITAVSFSDASDKIFTGGIDNDVKVWDIRKGEVTMTLEGHQDMITSMQLSPDGSYLL 240

Query: 1096 SNAMDCSLRIWDLRPYAPQNRCVKIFSGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVYI 1275
            +N MD  L IWD+RPYAPQNRCVKIF GHQHNFEKNLLKC WSPDGSKVTAGSADRMVYI
Sbjct: 241  TNGMDNKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSADRMVYI 300

Query: 1276 WDTTSRRILYRLPGHTGSVNESAFHPTEPIIGSCSSDKQIYLGEI 1410
            WDTTSRRILY+LPGH GSVNE  FHPTEPIIGSCSSDKQIYLGEI
Sbjct: 301  WDTTSRRILYKLPGHAGSVNECVFHPTEPIIGSCSSDKQIYLGEI 345