BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007786
         (1351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEV41134.1| D2/4-type cyclin [Populus x canadensis]                374   e-101
ref|XP_002514014.1| cyclin d, putative [Ricinus communis] gi|223...   368   2e-99
emb|CAN88854.1| D2/4-type cyclin [Populus trichocarpa]                364   2e-98
ref|XP_003544823.1| PREDICTED: cyclin-D4-1-like [Glycine max]         363   7e-98
emb|CBI19236.3| unnamed protein product [Vitis vinifera]              362   9e-98

>gb|AEV41134.1| D2/4-type cyclin [Populus x canadensis]
          Length = 353

 Score =  374 bits (960), Expect = e-101
 Identities = 203/345 (58%), Positives = 247/345 (71%), Gaps = 4/345 (1%)
 Frame = +2

Query: 140  SLLCPENSNVCFDDEIGNGFLEEQWNP---HKLDKKINFFHSGDFFQLGNLPLQSEECMS 310
            +LLC E++N  FDD        E++     H   +  N    GD    G LP+QS+EC+ 
Sbjct: 11   NLLCAEDNNSIFDDNDHYDATVEEFEATWHHGNHQICNQNGGGDG---GCLPMQSDECLV 67

Query: 311  LIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFDRF 490
            L+VEKEC  LP  DYLKRL+NGDLD+  RK+A+DW+ KVH+++ FGPL AYLSI+Y DRF
Sbjct: 68   LMVEKECQHLPNGDYLKRLRNGDLDMGARKEAVDWIAKVHAHFGFGPLCAYLSINYLDRF 127

Query: 491  LSNYELPSGRAWVVQLLAVACLSLAAKMEEAVMPLSLDLQVGEPRFVFEARTIQRMELVV 670
            LS YELP+G+ W++QLLAVACLSLAAKMEE  +PLSLDLQVGE RFVFEARTIQRMEL+V
Sbjct: 128  LSAYELPNGKPWMMQLLAVACLSLAAKMEETEVPLSLDLQVGESRFVFEARTIQRMELLV 187

Query: 671  LSTLKWRMQAVTPFSFIDYFLHKINDDR-PPLKLFISQSAELTLCLANGIEFLEYKPSEV 847
            LSTL WRMQA+TPFSFIDYFL KIN+D+ PP K  I QS  L L    GI FLE++PSE+
Sbjct: 188  LSTLSWRMQAITPFSFIDYFLSKINNDQTPPPKSLILQSIHLILSTIRGIYFLEFRPSEI 247

Query: 848  AAAVTLSVLGESQIVNFDKAVSCFIQLVQKERVLKCLKLVQGFSPISGSVYVACAFHPST 1027
            AAAV ++V+GE++ V+ ++A+S   Q VQKERVLKCL+L+   S   GSV    A   S 
Sbjct: 248  AAAVAIAVVGETKTVDAEQAISVLAQPVQKERVLKCLQLIHDLSLFGGSVKGTSASLLSV 307

Query: 1028 PQSPIGVLDASCLSYKSEELTAGSGPISSCACPDAKRRKLNDTSE 1162
            PQSPIGVLDA+CLSY S   T      SS   PDAKRRKL+   E
Sbjct: 308  PQSPIGVLDAACLSYSSNHTTVEPCANSSHNTPDAKRRKLDKPCE 352


>ref|XP_002514014.1| cyclin d, putative [Ricinus communis] gi|223547100|gb|EEF48597.1|
            cyclin d, putative [Ricinus communis]
          Length = 354

 Score =  368 bits (944), Expect = 2e-99
 Identities = 195/345 (56%), Positives = 252/345 (73%), Gaps = 8/345 (2%)
 Frame = +2

Query: 140  SLLCPENSNVCFDDEIGNGF--------LEEQWNPHKLDKKINFFHSGDFFQLGNLPLQS 295
            SLLC E++   FDD+    +         E  W  H  + +IN  H    F + +LP+ S
Sbjct: 11   SLLCAEDNISIFDDDNNKDYCYGDVVDEFEGSW--HHGNHRIN--HQDRGFDV-SLPMLS 65

Query: 296  EECMSLIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSIS 475
            EEC+ L+VEKEC  LP +DYLKRL+ G+LDL  RK+A+DW+ KVH+++ FGPL+AYLSI+
Sbjct: 66   EECLRLMVEKECQHLPNADYLKRLRRGELDLGARKEAIDWIGKVHAHFGFGPLSAYLSIN 125

Query: 476  YFDRFLSNYELPSGRAWVVQLLAVACLSLAAKMEEAVMPLSLDLQVGEPRFVFEARTIQR 655
            Y DRFLS YELP G+ W++QLLAVACLS+AAKMEE  +P+ LDLQVGE RFVFEARTIQR
Sbjct: 126  YLDRFLSAYELPKGKDWMMQLLAVACLSIAAKMEETEVPIFLDLQVGESRFVFEARTIQR 185

Query: 656  MELVVLSTLKWRMQAVTPFSFIDYFLHKINDDRPPLKLFISQSAELTLCLANGIEFLEYK 835
            MEL+VLSTL WRM+A+TPFSFID FL+KIN+D  P    I QS +L L +  GI+FLE++
Sbjct: 186  MELLVLSTLSWRMKAITPFSFIDDFLNKINNDENPPTSLILQSIQLILSIIKGIDFLEFR 245

Query: 836  PSEVAAAVTLSVLGESQIVNFDKAVSCFIQLVQKERVLKCLKLVQGFSPISGSVYVACAF 1015
            PSEVAAAVT++V+GE + V+ ++A+    Q +QKE+VLKC +L+Q FS I G++      
Sbjct: 246  PSEVAAAVTIAVVGEIRTVDAEQAIFVLSQHIQKEKVLKCFQLIQDFSLIGGAIKDTNVR 305

Query: 1016 HPSTPQSPIGVLDASCLSYKSEELTAGSGPISSCACPDAKRRKLN 1150
              S PQSPIGVLDA+CLSY+S+E T GS   SS   P+AKR+KLN
Sbjct: 306  ILSVPQSPIGVLDAACLSYRSDESTVGSCANSSQDTPEAKRKKLN 350


>emb|CAN88854.1| D2/4-type cyclin [Populus trichocarpa]
          Length = 361

 Score =  364 bits (935), Expect = 2e-98
 Identities = 202/353 (57%), Positives = 246/353 (69%), Gaps = 16/353 (4%)
 Frame = +2

Query: 140  SLLCPENSNVCFDDEIGNGFLEEQWNP---HKLDKKINFFHSGDFFQLGNLPLQSEECMS 310
            +LLC E++N  FDD        E++     H   +  N    GD    G LP+QS+EC+ 
Sbjct: 11   NLLCAEDNNSIFDDNDHYDATVEEFEATWHHGNHQICNQNGGGDG---GCLPMQSDECLV 67

Query: 311  LIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKK------------VHSYYSFGPL 454
            L+VEKEC  LP  DYLKRL+NGDLD+  RK+A+DW+ K            VH+++ FGPL
Sbjct: 68   LMVEKECQHLPNGDYLKRLRNGDLDMGARKEAVDWIAKAGSFFFLFFFTIVHAHFGFGPL 127

Query: 455  TAYLSISYFDRFLSNYELPSGRAWVVQLLAVACLSLAAKMEEAVMPLSLDLQVGEPRFVF 634
             AYLSI+Y DRFLS YELP+G+ W++QLLAVACLSLAAKMEE  +PLSLDLQVGE RFVF
Sbjct: 128  CAYLSINYLDRFLSAYELPNGKPWMMQLLAVACLSLAAKMEETEVPLSLDLQVGESRFVF 187

Query: 635  EARTIQRMELVVLSTLKWRMQAVTPFSFIDYFLHKINDDR-PPLKLFISQSAELTLCLAN 811
            EARTIQRMEL+VLSTL WRMQA+TPFSFIDYFL KIN+D+ PP K  I QS  L L    
Sbjct: 188  EARTIQRMELLVLSTLSWRMQAITPFSFIDYFLSKINNDQTPPPKSLILQSIHLILSTIR 247

Query: 812  GIEFLEYKPSEVAAAVTLSVLGESQIVNFDKAVSCFIQLVQKERVLKCLKLVQGFSPISG 991
            GI FLE++PSE+AAAV ++V+GE++ V+ ++A+S   Q VQKERVLKCL+L+   S   G
Sbjct: 248  GIYFLEFRPSEIAAAVAIAVVGETKTVDAEQAISVLAQPVQKERVLKCLQLIHDLSLFGG 307

Query: 992  SVYVACAFHPSTPQSPIGVLDASCLSYKSEELTAGSGPISSCACPDAKRRKLN 1150
            SV    A   S PQSPIGVLDA+CLSY S   T      SS   PDAKRRKL+
Sbjct: 308  SVKGTSASLLSVPQSPIGVLDAACLSYSSNHTTVEPCANSSHNTPDAKRRKLD 360


>ref|XP_003544823.1| PREDICTED: cyclin-D4-1-like [Glycine max]
          Length = 355

 Score =  363 bits (931), Expect = 7e-98
 Identities = 190/345 (55%), Positives = 249/345 (72%), Gaps = 6/345 (1%)
 Frame = +2

Query: 140  SLLCPENSNVCFDDEIGNGF--LEEQWNPHKLDKKINFFHSGDFFQLGNLPLQSEECMSL 313
            SLLC E++++  +++ G     LE+ W   +  + ++   + D    G  PLQS+EC+ L
Sbjct: 10   SLLCAEDNSIFDENDYGGSVEVLEDAWQDPRYRRNLSQSENLDVPN-GFFPLQSDECLRL 68

Query: 314  IVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFDRFL 493
            +VEKE D LP  DY+ RL++GDLD   RK+A+DW++KV  ++ FGPL AYLSI+Y DRFL
Sbjct: 69   MVEKEWDHLPNGDYVNRLRSGDLDFGARKEAIDWIEKVQQHFGFGPLCAYLSINYLDRFL 128

Query: 494  SNYELPSGRAWVVQLLAVACLSLAAKMEEAVMPLSLDLQVGEPRFVFEARTIQRMELVVL 673
            S YELP  RAW +QLLAV CLSLAAKMEE  +P SLDLQVGE +++FEA+TIQRMEL+VL
Sbjct: 129  SAYELPKHRAWTMQLLAVGCLSLAAKMEETDVPFSLDLQVGESKYIFEAKTIQRMELLVL 188

Query: 674  STLKWRMQAVTPFSFIDYFLHKINDDRPPLKLFISQSAELTLCLANGIEFLEYKPSEVAA 853
            STL+WRMQA+TPFSFID+FL+KINDD+ P+   I QS +L L    GI+FLE++PSE+AA
Sbjct: 189  STLRWRMQAITPFSFIDHFLYKINDDQSPIGASILQSIQLILSTVRGIDFLEFRPSEIAA 248

Query: 854  AVTLSVLGESQIVNFDKAVSCFIQLVQKERVLKCLKLVQGFSPISGSV---YVACAFHPS 1024
            AV +SV+GE Q V+ +KA+S  IQLV+KERVLKC+K++Q  +  SG       A    PS
Sbjct: 249  AVAISVVGEGQTVHTEKAISVLIQLVEKERVLKCVKMIQELASNSGGSAKGASASVSVPS 308

Query: 1025 TPQSPIGVLDASCLSYKSEELTAGSGPISS-CACPDAKRRKLNDT 1156
             P+SP+GVL  +C SYKS++  A S   SS    PDAKRRKLN T
Sbjct: 309  VPESPLGVLVTACFSYKSDDTNAASYANSSHNISPDAKRRKLNKT 353


>emb|CBI19236.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score =  362 bits (930), Expect = 9e-98
 Identities = 194/351 (55%), Positives = 251/351 (71%), Gaps = 7/351 (1%)
 Frame = +2

Query: 140  SLLCPENSNVCFDDEIGNGFLEE---QWNP--HKLDKKINFFHSGDFFQLGNLPLQSEEC 304
            SLLC E+++  FDD       EE    W+   H+   +   F+ G+F  L  LP+QS+EC
Sbjct: 11   SLLCGEDNSSIFDDADYGAAAEEFETAWHHQNHRSRNQEKSFNGGEF--LIGLPVQSDEC 68

Query: 305  MSLIVEKECDFLPRSDYLKRLQNGDLDLMVRKDALDWMKKVHSYYSFGPLTAYLSISYFD 484
            ++L++EKE   LP +DYL RL++GDLD+  R+D + W+ K H+++ FGPL AYL+I+Y D
Sbjct: 69   LALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYLAINYLD 128

Query: 485  RFLSNYELPSGRAWVVQLLAVACLSLAAKMEEAVMPLSLDLQVGEPRFVFEARTIQRMEL 664
            RFLS YELP G+AW+ QLLAVACLSLAAKMEE  +PL LDLQV E RFVFEARTIQRMEL
Sbjct: 129  RFLSTYELPKGKAWMAQLLAVACLSLAAKMEENEVPLCLDLQVAESRFVFEARTIQRMEL 188

Query: 665  VVLSTLKWRMQAVTPFSFIDYFLHKINDDRPPLKLFISQSAELTLCLANGIEFLEYKPSE 844
            +VL TLKWRMQAVTPFSF+DYFL +INDD  P +  I  S +L L    GI+FLE++PSE
Sbjct: 189  LVLRTLKWRMQAVTPFSFVDYFLRRINDDEFPARTSILLSIQLILSTVKGIDFLEFRPSE 248

Query: 845  VAAAVTLSVLGESQIVNFDKAVSCFIQLVQKERVLKCLKLVQGFSPISGSV--YVACAFH 1018
            +AAAV +S+ GE+Q V+ +KA+S  I+ ++KERVLKC++L+   S ISGSV      A  
Sbjct: 249  IAAAVAISIAGETQTVDIEKAISVVIEPIEKERVLKCIELMHDLSLISGSVKRSSTAASV 308

Query: 1019 PSTPQSPIGVLDASCLSYKSEELTAGSGPISSCACPDAKRRKLNDTSELDL 1171
            PS P +PIGVLDA+CLSYKS++ T GS   SS      K+RKLN   E++L
Sbjct: 309  PSVPHTPIGVLDAACLSYKSDDTTVGSCANSS----HNKKRKLNAPPEVEL 355