BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007702
         (1308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              278   4e-97
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   278   4e-97
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   270   1e-94
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   268   2e-94
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   269   2e-94

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  278 bits (712), Expect(2) = 4e-97
 Identities = 137/274 (50%), Positives = 191/274 (69%), Gaps = 5/274 (1%)
 Frame = -1

Query: 807 NDSGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKSSDKFKTGKET-YTQKVGISE 631
           +D  ++L FLPRHARLQ+MTYSSRMK ++ F+V+  +   SDK+KTGK+  Y +K  I E
Sbjct: 163 SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFE 222

Query: 630 EKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWVF 451
           + ++++IGRIPVMV S LCWMNG E+ DCE+DHGGYF++KGAEK F+AQE+I LKRLWV 
Sbjct: 223 DNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVS 282

Query: 450 DQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKVLNVHFLGCTIPLWVFLFALGMP 271
             P W ++YR   +R+RV +K+E     +  +    KVL V+F    IP+W+  FALG  
Sbjct: 283 SNPTWMVAYRPIWKRKRVYVKLE--PPKDENNRGGEKVLTVYFSSTEIPIWILFFALGAS 340

Query: 270 SDKEIIEMIDCNLSDESSVKLLLSTISYADDQHEG----FRRGGYSSKKIDELIKGTRYP 103
           SDKE++++ID N+ D     +L+++I  AD + E     FRR G +   +D+L+K  ++P
Sbjct: 341 SDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFP 400

Query: 102 PKESTRDCLDKYLFPTLTGSKQKALFLGYMVKRL 1
           P ES ++C+ KYLFP  +G KQKA FLGYMVK L
Sbjct: 401 PGESIQECISKYLFPNFSGVKQKARFLGYMVKCL 434



 Score =  104 bits (259), Expect(2) = 4e-97
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = -3

Query: 1099 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 920
            L   C++ + SFF EYGL+ HQI+S+NDF++NG+Q+VFD  GEI VEPGYDPSK+ G+G 
Sbjct: 82   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR-GEGD 140

Query: 919  WRRAKVKFGKVKLE 878
            WR A V+FGKV LE
Sbjct: 141  WRYASVRFGKVTLE 154


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  278 bits (712), Expect(2) = 4e-97
 Identities = 137/274 (50%), Positives = 191/274 (69%), Gaps = 5/274 (1%)
 Frame = -1

Query: 807 NDSGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKSSDKFKTGKET-YTQKVGISE 631
           +D  ++L FLPRHARLQ+MTYSSRMK ++ F+V+  +   SDK+KTGK+  Y +K  I E
Sbjct: 127 SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFE 186

Query: 630 EKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWVF 451
           + ++++IGRIPVMV S LCWMNG E+ DCE+DHGGYF++KGAEK F+AQE+I LKRLWV 
Sbjct: 187 DNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVS 246

Query: 450 DQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKVLNVHFLGCTIPLWVFLFALGMP 271
             P W ++YR   +R+RV +K+E     +  +    KVL V+F    IP+W+  FALG  
Sbjct: 247 SNPTWMVAYRPIWKRKRVYVKLE--PPKDENNRGGEKVLTVYFSSTEIPIWILFFALGAS 304

Query: 270 SDKEIIEMIDCNLSDESSVKLLLSTISYADDQHEG----FRRGGYSSKKIDELIKGTRYP 103
           SDKE++++ID N+ D     +L+++I  AD + E     FRR G +   +D+L+K  ++P
Sbjct: 305 SDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFP 364

Query: 102 PKESTRDCLDKYLFPTLTGSKQKALFLGYMVKRL 1
           P ES ++C+ KYLFP  +G KQKA FLGYMVK L
Sbjct: 365 PGESIQECISKYLFPNFSGVKQKARFLGYMVKCL 398



 Score =  104 bits (259), Expect(2) = 4e-97
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = -3

Query: 1099 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 920
            L   C++ + SFF EYGL+ HQI+S+NDF++NG+Q+VFD  GEI VEPGYDPSK+ G+G 
Sbjct: 46   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR-GEGD 104

Query: 919  WRRAKVKFGKVKLE 878
            WR A V+FGKV LE
Sbjct: 105  WRYASVRFGKVTLE 118


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  270 bits (691), Expect(2) = 1e-94
 Identities = 132/271 (48%), Positives = 188/271 (69%), Gaps = 4/271 (1%)
 Frame = -1

Query: 801 SGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKSSDKFKTGKETYTQKVGI--SEE 628
           SGK    LPRHARLQ+MTYSSRMK+ I  E++  +  SSDKFKTGK+ Y  K  +  + +
Sbjct: 130 SGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASD 189

Query: 627 KKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWVFD 448
            ++V IGR+PVMV S+LCWM  ++K DCEFD GGYF++KGAEK F+AQE+I L+RLW+ +
Sbjct: 190 NRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISN 249

Query: 447 QPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKVLNVHFLGCTIPLWVFLFALGMPS 268
              W ++YR+E++R R+ +++ E S SE +   + KVLNV+FL   +P+W+  FALG+ S
Sbjct: 250 VQGWTVAYRSEVKRNRLIIRLVENSKSE-DLKSKEKVLNVYFLSTEVPVWILFFALGVSS 308

Query: 267 DKEIIEMIDCNLSDESSVKLLLSTISYA--DDQHEGFRRGGYSSKKIDELIKGTRYPPKE 94
           DKEI+++ID    D + + +L +++     DD+ + FRRG  +   +D  I+ T +PP +
Sbjct: 309 DKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAD 368

Query: 93  STRDCLDKYLFPTLTGSKQKALFLGYMVKRL 1
              DCL+ YLF +L GSKQK  FLGYMVK L
Sbjct: 369 KIEDCLNLYLFASLKGSKQKCHFLGYMVKCL 399



 Score =  104 bits (259), Expect(2) = 1e-94
 Identities = 47/74 (63%), Positives = 60/74 (81%)
 Frame = -3

Query: 1099 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 920
            L   C+++S +FF +YGL+SHQI+SYNDF++NG+QK FD  G+I V+PGYDPSKK GDG 
Sbjct: 48   LKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK-GDGE 106

Query: 919  WRRAKVKFGKVKLE 878
            WR A VKFGKV L+
Sbjct: 107  WRYATVKFGKVTLD 120


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  268 bits (684), Expect(2) = 2e-94
 Identities = 133/264 (50%), Positives = 184/264 (69%), Gaps = 1/264 (0%)
 Frame = -1

Query: 789 LKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKSSDKFKTGKETYTQKVGISEEKKEVVI 610
           L  LPRHARLQ+MTYS+R+ VE   +V+  +   SDKFKTG + +  K    E K++V+I
Sbjct: 151 LDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLI 210

Query: 609 GRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWVFDQPDWNI 430
           GRIPVMV S LCWMNG +K DCEFDHGGYF+ KGAEK F+AQE++ LKRLWV + P W +
Sbjct: 211 GRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMV 270

Query: 429 SYRTEIRRRRVDLKIEEVSASECEHLQ-RTKVLNVHFLGCTIPLWVFLFALGMPSDKEII 253
            YR   +R+RV +K+ E    + EH++   K L+V+ L   +P+WV  FALG+ SD+E++
Sbjct: 271 GYRPGEKRKRVYIKLTE--TLKLEHIKGGEKALSVYIL-AEMPIWVLFFALGVSSDREVV 327

Query: 252 EMIDCNLSDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTRYPPKESTRDCLD 73
            +ID ++ D + V +L+++I  AD   E FR+G  +   +D LIK  ++PP+ES  +C++
Sbjct: 328 NLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECIN 387

Query: 72  KYLFPTLTGSKQKALFLGYMVKRL 1
            YLFP L+G KQKA FLGYMVK L
Sbjct: 388 AYLFPNLSGFKQKARFLGYMVKCL 411



 Score =  106 bits (264), Expect(2) = 2e-94
 Identities = 47/74 (63%), Positives = 59/74 (79%)
 Frame = -3

Query: 1099 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 920
            L   C++AS  FF++YG +SHQI+SYNDF+  G+Q+VFD +GEI VEPGYDPSK+ GDG 
Sbjct: 60   LKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR-GDGD 118

Query: 919  WRRAKVKFGKVKLE 878
            W+ A VKFGKV LE
Sbjct: 119  WKHASVKFGKVTLE 132


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  269 bits (688), Expect(2) = 2e-94
 Identities = 132/271 (48%), Positives = 187/271 (69%), Gaps = 4/271 (1%)
 Frame = -1

Query: 801 SGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKSSDKFKTGKETYTQKVGI--SEE 628
           SGK    LPRHARLQ+MTYSSRMK+ I  E++  +  SSDKFKTGK+ Y  K  +  + +
Sbjct: 130 SGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASD 189

Query: 627 KKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWVFD 448
            ++V IGR+PVMV S+LCWM   +K DCEFD GGYF++KGAEK F+AQE+I L+RLW+ +
Sbjct: 190 NRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISN 249

Query: 447 QPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKVLNVHFLGCTIPLWVFLFALGMPS 268
              W ++YR+E++R R+ +++ E S SE +   + KVLNV+FL   +P+W+  FALG+ S
Sbjct: 250 VQGWTVAYRSEVKRNRLIIRLVENSKSE-DLKSKEKVLNVYFLSTEVPVWILFFALGVSS 308

Query: 267 DKEIIEMIDCNLSDESSVKLLLSTISYA--DDQHEGFRRGGYSSKKIDELIKGTRYPPKE 94
           DKEI+++ID    D + + +L +++     DD+ + FRRG  +   +D  I+ T +PP +
Sbjct: 309 DKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAD 368

Query: 93  STRDCLDKYLFPTLTGSKQKALFLGYMVKRL 1
              DCL+ YLF +L GSKQK  FLGYMVK L
Sbjct: 369 KIEDCLNLYLFASLKGSKQKCHFLGYMVKCL 399



 Score =  104 bits (259), Expect(2) = 2e-94
 Identities = 47/74 (63%), Positives = 60/74 (81%)
 Frame = -3

Query: 1099 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 920
            L   C+++S +FF +YGL+SHQI+SYNDF++NG+QK FD  G+I V+PGYDPSKK GDG 
Sbjct: 48   LKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK-GDGE 106

Query: 919  WRRAKVKFGKVKLE 878
            WR A VKFGKV L+
Sbjct: 107  WRYATVKFGKVTLD 120