BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007696
         (1033 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   530   e-148
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   528   e-148
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              528   e-148
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      528   e-147
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      521   e-145

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  530 bits (1364), Expect = e-148
 Identities = 268/327 (81%), Positives = 299/327 (91%)
 Frame = +3

Query: 51   KPIGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGY 230
            K +   VSP+LL NR++ YVKGV+SEELL+HAEVV LS+ IKAGLSLED+KS+LK+RLG 
Sbjct: 178  KQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGC 237

Query: 231  DPSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQA 410
            DPS++Q+ATSL+IS AEL++K I CSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ 
Sbjct: 238  DPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQG 297

Query: 411  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAK 590
            GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVE SRTLRLP HLHERL LIRNAK
Sbjct: 298  GLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAK 357

Query: 591  IRLEEKGITPSIARIAESLNMSEKKIRNATEATSKVFSLDREAFPSLNGLPGETLHSYIA 770
            IRLEEKG+TPSI RIAESLN+S+KK+RNATEA SKVFSLDREAFPSLNGLPGET HSYIA
Sbjct: 358  IRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIA 417

Query: 771  DTRLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLS 950
            D  LENNPWHGVD+W LK+EVN LI  TL+EREQ+I+RLYYGLD E LTWEDIS+RIGLS
Sbjct: 418  DNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLS 477

Query: 951  RERVRQVGLVALEKLKHAARRKRLETM 1031
            RERVRQVGLVALEKLKHAAR+K+LE M
Sbjct: 478  RERVRQVGLVALEKLKHAARKKKLEAM 504


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  528 bits (1360), Expect = e-148
 Identities = 266/314 (84%), Positives = 294/314 (93%)
 Frame = +3

Query: 90   NRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATSLRI 269
            NR++ YVKGV+SEELLTHA+VV LS KIKAGL LED+KS+LK+R+G +P+++Q+A SLR+
Sbjct: 180  NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRM 239

Query: 270  SCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIEKFD 449
            S AEL++KLIECSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLIGLLRGIEKFD
Sbjct: 240  SRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFD 299

Query: 450  SSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITPSIA 629
            SSKGFKISTYVYWWIRQGVSRALVE SRTLRLP+HLHERLSLIRNAKIRLEEKGITPSI 
Sbjct: 300  SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSID 359

Query: 630  RIAESLNMSEKKIRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVD 809
            RIAE LNMS+KK+RNATEA SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVD
Sbjct: 360  RIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVD 419

Query: 810  EWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALE 989
            EW LK+EVN LI TTL ERE+DI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALE
Sbjct: 420  EWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALE 479

Query: 990  KLKHAARRKRLETM 1031
            KLK+AAR+ R+E M
Sbjct: 480  KLKNAARKGRMEAM 493


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  528 bits (1360), Expect = e-148
 Identities = 266/314 (84%), Positives = 294/314 (93%)
 Frame = +3

Query: 90   NRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATSLRI 269
            NR++ YVKGV+SEELLTHA+VV LS KIKAGL LED+KS+LK+R+G +P+++Q+A SLR+
Sbjct: 238  NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRM 297

Query: 270  SCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIEKFD 449
            S AEL++KLIECSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLIGLLRGIEKFD
Sbjct: 298  SRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFD 357

Query: 450  SSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITPSIA 629
            SSKGFKISTYVYWWIRQGVSRALVE SRTLRLP+HLHERLSLIRNAKIRLEEKGITPSI 
Sbjct: 358  SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSID 417

Query: 630  RIAESLNMSEKKIRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVD 809
            RIAE LNMS+KK+RNATEA SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVD
Sbjct: 418  RIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVD 477

Query: 810  EWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALE 989
            EW LK+EVN LI TTL ERE+DI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALE
Sbjct: 478  EWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALE 537

Query: 990  KLKHAARRKRLETM 1031
            KLK+AAR+ R+E M
Sbjct: 538  KLKNAARKGRMEAM 551


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  528 bits (1359), Expect = e-147
 Identities = 261/337 (77%), Positives = 304/337 (90%)
 Frame = +3

Query: 21   NSDAVPPTRRKPIGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDY 200
            +S A P +  KP+  I+ P+LL NR++ YVKGV+SEELLTHAEV+ LSKKI+ GL LE+ 
Sbjct: 168  HSSATPTSAAKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQ 227

Query: 201  KSKLKKRLGYDPSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNM 380
            KS+LK+RLG +PS+DQLA SL++S  +L++ LIECSLARE+LAMSNVRLVMSIAQ+YDN+
Sbjct: 228  KSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNV 287

Query: 381  GAELADLVQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLH 560
            GAE+ADLVQ GLIGLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVE SRTLRLPT+LH
Sbjct: 288  GAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLH 347

Query: 561  ERLSLIRNAKIRLEEKGITPSIARIAESLNMSEKKIRNATEATSKVFSLDREAFPSLNGL 740
            ERLSLIRNAK RLEEKGITPS+  IA SLNMS+KK+RNATEA+SK++SLDREAFPSLNGL
Sbjct: 348  ERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGL 407

Query: 741  PGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDKECLTW 920
            PGETLHSYIAD  LENNPWHGVD W LK+EVNNLI +TLR+RE++I+RLYYGLD ECLTW
Sbjct: 408  PGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTW 467

Query: 921  EDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 1031
            EDIS+RIGLSRERVRQVGLVALEKLKHAAR+++L+ M
Sbjct: 468  EDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAM 504


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  521 bits (1341), Expect = e-145
 Identities = 262/342 (76%), Positives = 298/342 (87%)
 Frame = +3

Query: 6    RKYVTNSDAVPPTRRKPIGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGL 185
            R  +  + A   +  K +  ++ P+LL NR + Y+ GV+ +ELLTH EVV LSKKIK GL
Sbjct: 157  RDLLPKNSATSDSSSKRLRSVIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGL 216

Query: 186  SLEDYKSKLKKRLGYDPSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQ 365
             LE+ KS+LK+RLG +PS+DQLA SL+IS A+LR+ LIECSLAREKLAMSNVRLVMSIAQ
Sbjct: 217  YLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQ 276

Query: 366  KYDNMGAELADLVQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRL 545
            +YD  G E+ADL+Q GLIGLLRGIEKFD S+GFKISTYVYWWIRQGVSRALVE SRTLRL
Sbjct: 277  RYDTNGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRL 336

Query: 546  PTHLHERLSLIRNAKIRLEEKGITPSIARIAESLNMSEKKIRNATEATSKVFSLDREAFP 725
            P HLHERLSLIRNAKI+L+E GITPSI +IAE LNMS+KK+RNATEA+SKVFSLDREAFP
Sbjct: 337  PIHLHERLSLIRNAKIKLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFP 396

Query: 726  SLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLDK 905
            SLNGLPGETLHSYIAD RLEN PWHGVDEW LK+EVNNLI +TLRERE++IVRLYYGLD 
Sbjct: 397  SLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDN 456

Query: 906  ECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 1031
            ECLTWEDISRRIGLSRERVRQVGLVALEKLKHAAR++RL+ M
Sbjct: 457  ECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAM 498