BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007617
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   173   2e-41
emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]   173   2e-41
ref|XP_003627527.1| Pentatricopeptide repeat-containing protein ...   169   2e-40
ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-39
ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containi...   164   9e-39

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  173 bits (438), Expect = 2e-41
 Identities = 82/122 (67%), Positives = 96/122 (78%)
 Frame = -2

Query: 371 FFESMHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGALLGACSFH 192
           FFESM +DF I PKL+HYGCMVDLLGRAG L EA+ L+ +MPM+PD+VVWG LLGACSFH
Sbjct: 339 FFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFH 398

Query: 191 GNVKXXXXXXXXXXXXEPRNPGIYVILSNVYASRGRWDGVAKVRKLMKGKQFTKAVGYSF 12
           G+V+            EP NPG YVILSN+YA+ GRWDGVA++RKLMKG + TKA GYSF
Sbjct: 399 GHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSF 458

Query: 11  IE 6
           IE
Sbjct: 459 IE 460


>emb|CAN66974.1| hypothetical protein VITISV_022076 [Vitis vinifera]
          Length = 967

 Score =  173 bits (438), Expect = 2e-41
 Identities = 82/122 (67%), Positives = 96/122 (78%)
 Frame = -2

Query: 371  FFESMHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGALLGACSFH 192
            FFESM +DF I PKL+HYGCMVDLLGRAG L EA+ L+ +MPM+PD+VVWG LLGACSFH
Sbjct: 794  FFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFH 853

Query: 191  GNVKXXXXXXXXXXXXEPRNPGIYVILSNVYASRGRWDGVAKVRKLMKGKQFTKAVGYSF 12
            G+V+            EP NPG YVILSN+YA+ GRWDGVA++RKLMKG + TKA GYSF
Sbjct: 854  GHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSF 913

Query: 11   IE 6
            IE
Sbjct: 914  IE 915


>ref|XP_003627527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355521549|gb|AET02003.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  169 bits (428), Expect = 2e-40
 Identities = 80/121 (66%), Positives = 94/121 (77%)
 Frame = -2

Query: 368 FESMHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGALLGACSFHG 189
           F+SM +DF I PKL+HYGCMVDLLGRAG L EAY ++K+MPMKPD+V+WG LLGACSFHG
Sbjct: 381 FQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHG 440

Query: 188 NVKXXXXXXXXXXXXEPRNPGIYVILSNVYASRGRWDGVAKVRKLMKGKQFTKAVGYSFI 9
           NV+            EP NPG YVILSN+YAS G+WDGVAK+RK+MKG + TK  G SFI
Sbjct: 441 NVELAEVAAESLFVLEPWNPGNYVILSNIYASAGKWDGVAKLRKVMKGSKITKTAGQSFI 500

Query: 8   E 6
           E
Sbjct: 501 E 501


>ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|222843153|gb|EEE80700.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  166 bits (420), Expect = 2e-39
 Identities = 81/121 (66%), Positives = 90/121 (74%)
 Frame = -2

Query: 368 FESMHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGALLGACSFHG 189
           F+SM  +F I PKL+HYGCMVDLLGRAG L EAY L+K MPMKPD+V+WG LLGACSFH 
Sbjct: 268 FQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHS 327

Query: 188 NVKXXXXXXXXXXXXEPRNPGIYVILSNVYASRGRWDGVAKVRKLMKGKQFTKAVGYSFI 9
           NV+            EP NPG YVIL N+YAS  RWDGVAK+RKLMKG Q TKA GYS I
Sbjct: 328 NVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVI 387

Query: 8   E 6
           E
Sbjct: 388 E 388


>ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  164 bits (414), Expect = 9e-39
 Identities = 78/121 (64%), Positives = 94/121 (77%)
 Frame = -2

Query: 368 FESMHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGALLGACSFHG 189
           F+SM   F I PKL+HYGCMVDLLGRAG L EAY ++++MPMKPD+V+WGALLGACSFH 
Sbjct: 341 FKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHD 400

Query: 188 NVKXXXXXXXXXXXXEPRNPGIYVILSNVYASRGRWDGVAKVRKLMKGKQFTKAVGYSFI 9
           NV+            EP NPG YVILSN+YAS G+WDGVAK+RK+MKG + TK+ G+SFI
Sbjct: 401 NVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFI 460

Query: 8   E 6
           E
Sbjct: 461 E 461