BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007592
         (619 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protei...    86   4e-15
ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp....    86   7e-15
ref|XP_002533105.1| cold-inducible RNA binding protein, putative...    83   5e-14
ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arab...    82   1e-13
ref|NP_190188.1| RNA recognition motif-containing protein [Arabi...    80   3e-13

>ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
           gi|297746123|emb|CBI16179.3| unnamed protein product
           [Vitis vinifera]
          Length = 112

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 51/126 (40%), Positives = 64/126 (50%)
 Frame = +1

Query: 76  MNPWNQFLCTRGFCSRLFVSNMSFYSNESDLINLFSPFGKVKDAKLVMDYRTNRPKGFGF 255
           + PW      R F S +FV+ +S Y+   +LI +FSPFG V  A+L+ D +T RPKGFGF
Sbjct: 14  LKPW---FSARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGF 70

Query: 256 ISFESEEQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKAINCSIVGGRLIFVEF 435
           + FESE  A+                               ALKA+N  IV GRLIFVE 
Sbjct: 71  VKFESEVDAE------------------------------KALKAMNGRIVRGRLIFVEI 100

Query: 436 AKTVEP 453
           AKT  P
Sbjct: 101 AKTTRP 106


>ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310490|gb|EFH40914.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 95

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 49/113 (43%), Positives = 64/113 (56%)
 Frame = +1

Query: 112 FCSRLFVSNMSFYSNESDLINLFSPFGKVKDAKLVMDYRTNRPKGFGFISFESEEQAQXX 291
           F ++LFVS +S Y+ +  L  LF+PFG++ +A+L+ D +T RPKGFGFI+FESE+ AQ  
Sbjct: 5   FTTQLFVSRLSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQ-- 62

Query: 292 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKAINCSIVGGRLIFVEFAKTVE 450
                                        ALKA+N  IV GRLIFVE AK VE
Sbjct: 63  ----------------------------NALKALNGKIVNGRLIFVEAAKEVE 87


>ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
           gi|223527096|gb|EEF29277.1| cold-inducible RNA binding
           protein, putative [Ricinus communis]
          Length = 94

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 48/110 (43%), Positives = 62/110 (56%)
 Frame = +1

Query: 118 SRLFVSNMSFYSNESDLINLFSPFGKVKDAKLVMDYRTNRPKGFGFISFESEEQAQXXXX 297
           S+LFV  +S Y+    L  LFSPFG VK+A+LV+D RT +PKGFGF++F+SE QAQ    
Sbjct: 7   SQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQ---- 62

Query: 298 XXXXXXXXXXXXXXXXXXXXXXXXXXXALKAINCSIVGGRLIFVEFAKTV 447
                                      ALKA+N  IV GRL+FVE AK++
Sbjct: 63  --------------------------KALKAMNGRIVDGRLLFVEVAKSI 86


>ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
           lyrata] gi|297323288|gb|EFH53709.1| hypothetical protein
           ARALYDRAFT_905782 [Arabidopsis lyrata subsp. lyrata]
          Length = 102

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 47/116 (40%), Positives = 65/116 (56%)
 Frame = +1

Query: 118 SRLFVSNMSFYSNESDLINLFSPFGKVKDAKLVMDYRTNRPKGFGFISFESEEQAQXXXX 297
           ++LFVS +S Y+ +  L  LFSPFG++K+A+L+ D  T RPKGFGFI+FESE+ A+    
Sbjct: 7   AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDAR---- 62

Query: 298 XXXXXXXXXXXXXXXXXXXXXXXXXXXALKAINCSIVGGRLIFVEFAKTVEPQKSD 465
                                      ALK+++  IV GRLIFVE AK+ E   +D
Sbjct: 63  --------------------------KALKSLDGKIVEGRLIFVEVAKSSEEVTTD 92


>ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|7630030|emb|CAB88326.1| RNA binding protein-like
           [Arabidopsis thaliana] gi|46931202|gb|AAT06405.1|
           At3g46020 [Arabidopsis thaliana]
           gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis
           thaliana] gi|332644581|gb|AEE78102.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 102

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 45/111 (40%), Positives = 62/111 (55%)
 Frame = +1

Query: 118 SRLFVSNMSFYSNESDLINLFSPFGKVKDAKLVMDYRTNRPKGFGFISFESEEQAQXXXX 297
           ++LFVS +S Y+ +  L  LFSPFG++K+A+L+ D  T RPKGFGFI+F+SE+ A+    
Sbjct: 7   AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR---- 62

Query: 298 XXXXXXXXXXXXXXXXXXXXXXXXXXXALKAINCSIVGGRLIFVEFAKTVE 450
                                      ALK+++  IV GRLIFVE AK  E
Sbjct: 63  --------------------------KALKSLDGKIVDGRLIFVEVAKNAE 87