BLASTX nr result
ID: Coptis24_contig00007485
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007485
(691 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g... 51 3e-16
ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycin... 69 1e-15
ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23... 67 1e-15
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 53 4e-15
ref|XP_003609736.1| F-box/kelch-repeat protein [Medicago truncat... 53 5e-14
>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
gi|355511583|gb|AES92725.1| F-box family protein
[Medicago truncatula]
Length = 392
Score = 51.2 bits (121), Expect(3) = 3e-16
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 588 MSNIPQEIITNILSRLPVKSLLKFKSVCKPWYTLISDPDFIKMH 457
M+++P E+ T ILSR+P K LL+ +S CK W LI DFI +H
Sbjct: 1 MADLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLH 44
Score = 39.7 bits (91), Expect(3) = 3e-16
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Frame = -3
Query: 446 HHAKENDNINIMLYDQGKRIYSIDYD-MSYI-EIYYPGKCEYNGVKLLGYCNGLVYISTE 273
H +K D++ I+ Q R+Y +D + M + E+ +P C N +K+LG CNGL+ I
Sbjct: 44 HLSKSRDSVIILR--QHSRLYELDLNSMDRVKELDHPLMCYSNRIKVLGSCNGLLCICNI 101
Query: 272 CFS-AIWNPCTRS----------RISENPSNTI 207
A WNP R R N +NTI
Sbjct: 102 ADDIAFWNPTIRKHRIIPSEPLIRKETNENNTI 134
Score = 39.7 bits (91), Expect(3) = 3e-16
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 175 GFGYDSIMDKYKVVNIVNRDYYNDL--EYLGSLVEIYRMGENLWCRIEDISYYMC 17
GFGYDS D YK+V+I Y+ DL S V+IY M ++W + + Y +C
Sbjct: 144 GFGYDSATDDYKLVSI---SYFVDLHNRSFDSHVKIYTMRTDVWKTLPSMPYALC 195
>ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max]
gi|255637050|gb|ACU18857.1| unknown [Glycine max]
Length = 406
Score = 68.6 bits (166), Expect(3) = 1e-15
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = -2
Query: 579 IPQEIITNILSRLPVKSLLKFKSVCKPWYTLISDPDFIKMHFHVPSC*RKRQYQHHAI 406
+P E++ ILSRLPVKSLL+F+ VCK W +LISDP F+K H H+ S R + HH I
Sbjct: 49 LPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHLHLSS--RCTHFTHHRI 104
Score = 32.7 bits (73), Expect(3) = 1e-15
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 175 GFGYDSIMDKYKVVNIVNRDYYNDLEY-LGSLVEIYRMGENLWCRIEDISY 26
G GYD + + YKVV + + + EY + V++Y M N W +I+D +
Sbjct: 194 GLGYDHVNEDYKVVAV----FCDPSEYFIECKVKVYSMATNSWRKIQDFPH 240
Score = 26.9 bits (58), Expect(3) = 1e-15
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 EIYYPGKCEYNGVKLLGYCNGLV--YISTECFSAIWNPCTR 240
++ YP K ++ ++G CNGL+ I +C +WNP R
Sbjct: 134 DLNYPVKNKFRHDGIVGSCNGLLCFAIKGDCV-LLWNPSIR 173
>ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]
Length = 405
Score = 67.4 bits (163), Expect(3) = 1e-15
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = -2
Query: 579 IPQEIITNILSRLPVKSLLKFKSVCKPWYTLISDPDFIKMHFHVPSC*RKRQYQHHAI 406
+P E++ ILSRLPVKSLL+F+ VCK W +LI DP F+K H H+ S R + HH I
Sbjct: 49 LPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMKKHLHLSS--RSTHFTHHRI 104
Score = 32.7 bits (73), Expect(3) = 1e-15
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 175 GFGYDSIMDKYKVVNIVNRDYYNDLEY-LGSLVEIYRMGENLWCRIEDISY 26
G GYD + + YKVV + + + EY + V++Y M N W +I+D +
Sbjct: 193 GLGYDHVNEDYKVVAV----FCDPSEYFIECKVKVYSMATNSWRKIQDFPH 239
Score = 28.1 bits (61), Expect(3) = 1e-15
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 356 EIYYPGKCEYNGVKLLGYCNGLV--YISTECFSAIWNPCTR 240
E+ YP K ++ ++G CNGL+ I +C +WNP R
Sbjct: 133 ELNYPVKNKFRHDGIVGSCNGLLCFAIKGDCV-LLWNPSIR 172
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein
[Populus trichocarpa]
Length = 396
Score = 53.1 bits (126), Expect(3) = 4e-15
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -2
Query: 588 MSNIPQEIITNILSRLPVKSLLKFKSVCKPWYTLISDPDFIKMH 457
MS +P E+I IL RLP K LL +SV KPW LI P+F+K+H
Sbjct: 1 MSGLPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLH 44
Score = 37.4 bits (85), Expect(3) = 4e-15
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = -3
Query: 446 HHAKENDNINIMLYDQGKRIYSIDYDMSYI--------EIYYPGKCEYNGVKLLGYCNGL 291
H + N+ I+L ++ +D++ + + E+ +P C +G+K+LG NGL
Sbjct: 47 HSMDTSSNLYIILRTTS-HVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGL 105
Query: 290 VYISTECFS-AIWNPCTR 240
+ IS A+WNP TR
Sbjct: 106 LCISNVVDDIAVWNPSTR 123
Score = 36.2 bits (82), Expect(3) = 4e-15
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 193 ETCSTQ--GFGYDSIMDKYKVVNIVNRDYYNDLEYLGSLVEIYRMGENLWCRIEDISY 26
++CS GFGYDS+ D YK+V I + S V++Y + + W RI D+ Y
Sbjct: 142 KSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSF-ESEVKVYSLRKQSWRRIGDMPY 198
>ref|XP_003609736.1| F-box/kelch-repeat protein [Medicago truncatula]
gi|355510791|gb|AES91933.1| F-box/kelch-repeat protein
[Medicago truncatula]
Length = 394
Score = 53.1 bits (126), Expect(3) = 5e-14
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = -2
Query: 579 IPQEIITNILSRLPVKSLLKFKSVCKPWYTLISDPDFIKMHFHV 448
+P E+IT IL RLPVK+L++ K V K W++LISDP +HF +
Sbjct: 11 LPHELITQILVRLPVKALIQLKWVSKSWFSLISDPHCANLHFQL 54
Score = 37.0 bits (84), Expect(3) = 5e-14
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = -1
Query: 232 YLKIPVTRLSLEMETCSTQ---GFGYDSIMDKYKVVNIVNRDY-YNDLEYLGSLVEIYRM 65
+++IP++ +++ + GFGYD D Y VV+I Y YND +L E + +
Sbjct: 136 HIQIPLSHFDSKLKKYHSNHLYGFGYDHSTDDYLVVSISYHPYDYNDSSHL----EFFSL 191
Query: 64 GENLWCRIE 38
N+W +IE
Sbjct: 192 RNNIWKQIE 200
Score = 32.7 bits (73), Expect(3) = 5e-14
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Frame = -3
Query: 440 AKENDNINIMLYDQGKRIYSIDYDMSYIEIYY------------PGKCEYNGVKLLGYCN 297
A+ I ++ D +YSID++ S+ YY P + V++ G C
Sbjct: 59 AQTPPRILAIMEDSPHEVYSIDFESSH---YYASLVNLTKSCLIPQSHNFPSVEIKGSCR 115
Query: 296 GLVYISTECFSA--IWNPCT 243
G ++ CFS+ +WNP T
Sbjct: 116 GFIFF--HCFSSLYLWNPST 133