BLASTX nr result

ID: Coptis24_contig00007231 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007231
         (1464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vi...   590   e-166
emb|CBI32661.3| unnamed protein product [Vitis vinifera]              584   e-164
gb|ABK96132.1| unknown [Populus trichocarpa]                          580   e-163
ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|2...   577   e-162
gb|ABK93648.1| unknown [Populus trichocarpa]                          575   e-162

>ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vitis vinifera]
          Length = 373

 Score =  590 bits (1522), Expect = e-166
 Identities = 285/375 (76%), Positives = 314/375 (83%), Gaps = 3/375 (0%)
 Frame = -3

Query: 1396 MGSVHGRYTTSGQRDNT---RTQPNSHSRPHKNQNHPPTQSTNTMTSLPYAHVDSSLRAL 1226
            MG  HGR + + ++  T    T P++ +        P       M+ LPYAHVDS+LRAL
Sbjct: 1    MGGAHGRCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMSCLPYAHVDSNLRAL 60

Query: 1225 AAQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRQGCRQKEPLWIVFEVSGTIHLSSYLT 1046
            A QAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR GCR+KEPLWIVFEVSG IHLSSYL 
Sbjct: 61   AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGIIHLSSYLN 120

Query: 1045 VSSFKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSRHIWIDR 866
            VSS+KTIDGRGQRIK TGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS+HIWIDR
Sbjct: 121  VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDR 180

Query: 865  CSLRDYEDGLIDITRESTDITISRCHFSGHDKTMLIGADPNHVGDRCIRVTIHHCFFDGT 686
            CSLRD++DGLIDITR STDITISRCHFS HDKTMLIGADP+H GDRCIRVTIHHCFFDGT
Sbjct: 181  CSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGT 240

Query: 685  RQRHPRVRYGKVHLYNNYTRDWGIYAVCISVDAQIYSQCNIYEAGKKKGTFKYLPEKAAD 506
            RQRHPRVRYGKVHLYNNYTR+WGIYAVC SV++QIYSQCNIYEAG KK  FKYL EKAAD
Sbjct: 241  RQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKYLTEKAAD 300

Query: 505  KEEVSSGWVISEGDLYLNGAQACLPKEAIKDCTFHPSEFYPTWTTEAPSESLKEVLRHCT 326
            KEE  +G + SEGDL++NG QA L   A +   FHP EFYPTWT EAPS++LK+VL HCT
Sbjct: 301  KEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEAPSDALKQVLHHCT 358

Query: 325  GWQSIPRPAEKTVIA 281
            GWQ +PRPA++  IA
Sbjct: 359  GWQCVPRPADEAAIA 373


>emb|CBI32661.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score =  584 bits (1505), Expect = e-164
 Identities = 276/331 (83%), Positives = 298/331 (90%)
 Frame = -3

Query: 1273 MTSLPYAHVDSSLRALAAQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRQGCRQKEPLW 1094
            M+ LPYAHVDS+LRALA QAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR GCR+KEPLW
Sbjct: 1    MSCLPYAHVDSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLW 60

Query: 1093 IVFEVSGTIHLSSYLTVSSFKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDV 914
            IVFEVSG IHLSSYL VSS+KTIDGRGQRIK TGKGLRLKECEHVIICNLEFEGGRGPDV
Sbjct: 61   IVFEVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDV 120

Query: 913  DGIQIKPNSRHIWIDRCSLRDYEDGLIDITRESTDITISRCHFSGHDKTMLIGADPNHVG 734
            DGIQIKPNS+HIWIDRCSLRD++DGLIDITR STDITISRCHFS HDKTMLIGADP+H G
Sbjct: 121  DGIQIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTG 180

Query: 733  DRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRDWGIYAVCISVDAQIYSQCNIYEA 554
            DRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTR+WGIYAVC SV++QIYSQCNIYEA
Sbjct: 181  DRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240

Query: 553  GKKKGTFKYLPEKAADKEEVSSGWVISEGDLYLNGAQACLPKEAIKDCTFHPSEFYPTWT 374
            G KK  FKYL EKAADKEE  +G + SEGDL++NG QA L   A +   FHP EFYPTWT
Sbjct: 241  GHKKVAFKYLTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWT 298

Query: 373  TEAPSESLKEVLRHCTGWQSIPRPAEKTVIA 281
             EAPS++LK+VL HCTGWQ +PRPA++  IA
Sbjct: 299  VEAPSDALKQVLHHCTGWQCVPRPADEAAIA 329


>gb|ABK96132.1| unknown [Populus trichocarpa]
          Length = 389

 Score =  580 bits (1496), Expect = e-163
 Identities = 277/382 (72%), Positives = 313/382 (81%), Gaps = 14/382 (3%)
 Frame = -3

Query: 1384 HGRYTTSGQRDNTRTQPNSHSRPHKNQNHPPT--------------QSTNTMTSLPYAHV 1247
            HG +       N  +   + S P  +Q  PP+               +++  TSLPY+HV
Sbjct: 7    HGHHRKFRNNGNVPSPDKTASAPSPSQPVPPSIYQPEHPLIPNSSIHASSMATSLPYSHV 66

Query: 1246 DSSLRALAAQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRQGCRQKEPLWIVFEVSGTI 1067
            DS+LRALAAQAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR GCR+KEPLWIVFEVSGTI
Sbjct: 67   DSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWIVFEVSGTI 126

Query: 1066 HLSSYLTVSSFKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 887
             L SYL VSS+KTIDGRGQRIK TGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKP S
Sbjct: 127  QLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKS 186

Query: 886  RHIWIDRCSLRDYEDGLIDITRESTDITISRCHFSGHDKTMLIGADPNHVGDRCIRVTIH 707
            +HIWIDRCSLRDY+DGLIDI RESTDIT+SRCHF+ HDKT+LIGADP HVGDRCIRVTIH
Sbjct: 187  KHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGDRCIRVTIH 246

Query: 706  HCFFDGTRQRHPRVRYGKVHLYNNYTRDWGIYAVCISVDAQIYSQCNIYEAGKKKGTFKY 527
            HCFFDGTRQRHPRVR+GKVHLYNNY R+WGIYAVC SV++QIYSQCNIYEAG+KK  FKY
Sbjct: 247  HCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAGQKKIAFKY 306

Query: 526  LPEKAADKEEVSSGWVISEGDLYLNGAQACLPKEAIKDCTFHPSEFYPTWTTEAPSESLK 347
            L EKAADKEE SSG + SEGDL++ GAQA L  E  + C FHPSE+YPTWT E P++SLK
Sbjct: 307  LSEKAADKEEASSGCIRSEGDLFVIGAQAGLMAEDGEFCMFHPSEYYPTWTIEPPTDSLK 366

Query: 346  EVLRHCTGWQSIPRPAEKTVIA 281
            +VL+HCTGWQ +PRPA+  + A
Sbjct: 367  QVLQHCTGWQCVPRPADHPLAA 388


>ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|222855411|gb|EEE92958.1|
            predicted protein [Populus trichocarpa]
          Length = 333

 Score =  577 bits (1486), Expect = e-162
 Identities = 269/330 (81%), Positives = 297/330 (90%)
 Frame = -3

Query: 1270 TSLPYAHVDSSLRALAAQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRQGCRQKEPLWI 1091
            TSLPY+HVDS+LRALAAQAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR GCR+KEPLWI
Sbjct: 3    TSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWI 62

Query: 1090 VFEVSGTIHLSSYLTVSSFKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDVD 911
            VFEVSGTI L SYL VSS+KTIDGRGQRIK TGKGLRLKECEHVIICNLEFEGGRGPDVD
Sbjct: 63   VFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVD 122

Query: 910  GIQIKPNSRHIWIDRCSLRDYEDGLIDITRESTDITISRCHFSGHDKTMLIGADPNHVGD 731
            GIQIKP S+HIWIDRCSLRDY+DGLIDI RESTDIT+SRCHF+ HDKT+LIGADP HVGD
Sbjct: 123  GIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGD 182

Query: 730  RCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRDWGIYAVCISVDAQIYSQCNIYEAG 551
            RCIRVTIHHCFFDGTRQRHPRVR+GKVHLYNNY R+WGIYAVC SV++QIYSQCNIYEAG
Sbjct: 183  RCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAG 242

Query: 550  KKKGTFKYLPEKAADKEEVSSGWVISEGDLYLNGAQACLPKEAIKDCTFHPSEFYPTWTT 371
            +KK  FKYL EKAADKEE SSG + SEGDL++ GAQA L  E  + C FHPSE+YPTWT 
Sbjct: 243  QKKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMTEDGEVCMFHPSEYYPTWTV 302

Query: 370  EAPSESLKEVLRHCTGWQSIPRPAEKTVIA 281
            E P++SLK+VL+HCTGWQ +PRPA+  + A
Sbjct: 303  EPPTDSLKQVLQHCTGWQCVPRPADHPLAA 332


>gb|ABK93648.1| unknown [Populus trichocarpa]
          Length = 386

 Score =  575 bits (1483), Expect = e-162
 Identities = 278/363 (76%), Positives = 307/363 (84%), Gaps = 5/363 (1%)
 Frame = -3

Query: 1354 DNTRTQPNSHSR--PHKNQNHPPTQSTNT---MTSLPYAHVDSSLRALAAQAEGFGRLAI 1190
            D T   P++     P   Q   PT ST T    T+LPY HVDSSLRALAAQAEGFGR A 
Sbjct: 23   DKTAAVPSASQPVPPFIYQPQIPTSSTRTPKMATALPYPHVDSSLRALAAQAEGFGRSAN 82

Query: 1189 GGLHGPLYHVTTLADDGPGSLRQGCRQKEPLWIVFEVSGTIHLSSYLTVSSFKTIDGRGQ 1010
            GGLHGP+Y+VTTLADDGPGSLR GCR+KEPLWIVFEVSGTI L SYL VSS+KTIDGRGQ
Sbjct: 83   GGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWIVFEVSGTIQLRSYLNVSSYKTIDGRGQ 142

Query: 1009 RIKFTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSRHIWIDRCSLRDYEDGLID 830
            RIK TGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKP S+HIWIDRCSLRDY+DGLID
Sbjct: 143  RIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYDDGLID 202

Query: 829  ITRESTDITISRCHFSGHDKTMLIGADPNHVGDRCIRVTIHHCFFDGTRQRHPRVRYGKV 650
            ITRESTDITISRC+F  HDKTMLIGADP HVGDRCIRVTIHHCFFDGTRQRHPRVR+GKV
Sbjct: 203  ITRESTDITISRCYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKV 262

Query: 649  HLYNNYTRDWGIYAVCISVDAQIYSQCNIYEAGKKKGTFKYLPEKAADKEEVSSGWVISE 470
            HLYNNYTR+WGIYAVC SV++QIYSQ NIYEAG+KK  FKYL EKAADKE+  SG + SE
Sbjct: 263  HLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQKKIAFKYLSEKAADKEKARSGSIRSE 322

Query: 469  GDLYLNGAQACLPKEAIKDCTFHPSEFYPTWTTEAPSESLKEVLRHCTGWQSIPRPAEKT 290
            GDL++ G QA L  E  + C FHPSE+YPTWT E P++SLK+VL+HCTGWQ +PRPA++ 
Sbjct: 323  GDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVEPPTDSLKQVLQHCTGWQCVPRPADQP 382

Query: 289  VIA 281
            + A
Sbjct: 383  LAA 385


Top