BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007114
         (1135 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-li...   482   e-134
emb|CBI32318.3| unnamed protein product [Vitis vinifera]              468   e-129
ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-li...   456   e-126
ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-li...   452   e-125
ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago t...   449   e-124

>ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
          Length = 330

 Score =  482 bits (1240), Expect = e-134
 Identities = 233/313 (74%), Positives = 280/313 (89%), Gaps = 2/313 (0%)
 Frame = +3

Query: 12  MKEVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELD 191
           M+  +L+LNQTQK+RLQ+AL+ ++ LSSK+NS+ASV V DTIPVN EDGVLKGHGT +LD
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 192 GEVVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRVVEVAPKRWRIEINFSQDAVLM 371
           GEVVATLCGVVERVNKLVY++T RARYKPETGDI+VGRV E+APKRWR++INFSQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 372 LSSMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERG 551
           LSSMN+PDGIQRRRTA+DELNMR IFEEND++CAEVRG QHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 552 QLVMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSD--NT 725
           Q++ I PYLVKRRKQH H+LE++G+D+ILGCNG+IWVGEHVE + +++EDQ  K++  NT
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240

Query: 726 KNSSDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLN 905
           K+SS     S+EEQERTYT L TRQ ICR+ NAVRVL++LGF++T+E+I +TV+LS SLN
Sbjct: 241 KSSSS-TFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 299

Query: 906 LDIHEMLGTEFYV 944
           LDIHEMLG+EFYV
Sbjct: 300 LDIHEMLGSEFYV 312


>emb|CBI32318.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  468 bits (1203), Expect = e-129
 Identities = 227/313 (72%), Positives = 274/313 (87%), Gaps = 2/313 (0%)
 Frame = +3

Query: 12  MKEVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELD 191
           M+  +L+LNQTQK+RLQ+AL+ ++ LSSK+NS+ASV V DTIPVN EDGVLKGHGT +LD
Sbjct: 1   MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60

Query: 192 GEVVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRVVEVAPKRWRIEINFSQDAVLM 371
           GEVVATLCGVVERVNKLVY++T RARYKPETGDI+VGRV E+APKRWR++INFSQDAVLM
Sbjct: 61  GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120

Query: 372 LSSMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERG 551
           LSSMN+PDGIQRRRTA+DELNMR IFEEND++CAEVRG QHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180

Query: 552 QLVMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSD--NT 725
           Q++ I PYLVKRRKQH H+LE++G+D+ILGCNG+IWVGEHVE + +++EDQ  K++  NT
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240

Query: 726 KNSSDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLN 905
           K+S           +RTYT L TRQ ICR+ NAVRVL++LGF++T+E+I +TV+LS SLN
Sbjct: 241 KSS-----------KRTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLN 289

Query: 906 LDIHEMLGTEFYV 944
           LDIHEMLG+EFYV
Sbjct: 290 LDIHEMLGSEFYV 302


>ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
          Length = 327

 Score =  456 bits (1174), Expect = e-126
 Identities = 221/311 (71%), Positives = 270/311 (86%)
 Frame = +3

Query: 12  MKEVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELD 191
           M+E++L L+QTQK+RLQKAL+ ++ LS+K NS ASVI+ D+I VN EDGVLKGHGT +L+
Sbjct: 1   MREIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLN 60

Query: 192 GEVVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRVVEVAPKRWRIEINFSQDAVLM 371
           GEVVATLCGVVERVNKLVYV+  R+RYKPE GDIV+GRVVEVA KRWR+EIN++QDAVL+
Sbjct: 61  GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLL 120

Query: 372 LSSMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERG 551
           LSSMNMPDG+QRRRTA+DELNMR IFEENDV+CAEVRG QHDG LHLQARS+KYGKL RG
Sbjct: 121 LSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRG 179

Query: 552 QLVMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSDNTKN 731
           QL+ +PPYLVKR+KQHFHHLE++GID+ILGCNG+IWVGEHVE +D M+EDQ ++SD+   
Sbjct: 180 QLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVL 239

Query: 732 SSDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLD 911
             +    S+EEQE+ YT L TR+ I R  NAVRVLS+LGFN+T+E+I   +DLS+S+NLD
Sbjct: 240 FPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLD 299

Query: 912 IHEMLGTEFYV 944
           IH+MLG+EF V
Sbjct: 300 IHDMLGSEFCV 310


>ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
          Length = 327

 Score =  452 bits (1162), Expect = e-125
 Identities = 224/315 (71%), Positives = 268/315 (85%), Gaps = 2/315 (0%)
 Frame = +3

Query: 12  MKEVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELD 191
           MK ++L+LN TQKIRL++A + ++ LSSK NS ASV+V DTIP+N EDGVLKGHGT +L+
Sbjct: 1   MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 192 GEVVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRVVEVAPKRWRIEINFSQDAVLM 371
           GEVVA++CGVVERVNKL+YV+  RARYKPE GDIVVGRV EVAPKRWR++IN+ QDAVLM
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120

Query: 372 LSSMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERG 551
           LSSMN+PDGIQRRRTA+DELNMR IFEENDVICAEVRGLQHDG LHLQARSQKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 179

Query: 552 QLVMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVE--VRDVMVEDQETKSDNT 725
           QL+ + PYL+KRRKQHFHHLEQYGID+ILGCNG+IW+GEHV+  V D M+EDQ  K +  
Sbjct: 180 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPE-- 237

Query: 726 KNSSDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLN 905
           +  S  E T   + +  YTPL TRQ ICR  NA+RVLS+LGF +T+E+I++ V+LSISLN
Sbjct: 238 QKGSKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLN 297

Query: 906 LDIHEMLGTEFYVRT 950
           +D+HEMLG+EF V T
Sbjct: 298 IDVHEMLGSEFCVLT 312


>ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
           gi|217074186|gb|ACJ85453.1| unknown [Medicago
           truncatula] gi|355510788|gb|AES91930.1| Exosome complex
           exonuclease RRP4 [Medicago truncatula]
           gi|388516977|gb|AFK46550.1| unknown [Medicago
           truncatula]
          Length = 327

 Score =  449 bits (1156), Expect = e-124
 Identities = 222/311 (71%), Positives = 262/311 (84%)
 Frame = +3

Query: 12  MKEVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELD 191
           M+ + L L+QTQK+RLQKAL+H++ LSSK NS +SV + D+IPVN EDGVLKGHGT +LD
Sbjct: 1   MRGIHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLD 60

Query: 192 GEVVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRVVEVAPKRWRIEINFSQDAVLM 371
           GEVVATLCGVVERVNKLVYV+  R+RYKPE GDIV+GRV+EVA KRWR++IN+SQ+A LM
Sbjct: 61  GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLM 120

Query: 372 LSSMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERG 551
           LS+MNMPDG+QRRRTALDELNMR IFEE DVICAEVRG QHDG LHLQARSQKYGKL  G
Sbjct: 121 LSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG-LHLQARSQKYGKLSTG 179

Query: 552 QLVMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSDNTKN 731
           QL+ + PYLVKR+KQHFHHLEQYGID+I+GCNG+IWVGEHVEVRD MVEDQ  +SD    
Sbjct: 180 QLLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVL 239

Query: 732 SSDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLD 911
           + +    S+EEQE+ YT L TR+ ICR  NAVR LS+LGF +T E+I   +DLS+S NLD
Sbjct: 240 TPNKNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLD 299

Query: 912 IHEMLGTEFYV 944
           IH+MLG+EF V
Sbjct: 300 IHDMLGSEFCV 310