BLASTX nr result
ID: Coptis24_contig00007051
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007051
(1934 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chlorop... 685 0.0
ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa... 679 0.0
gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo] 666 0.0
ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa... 664 0.0
ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa... 664 0.0
>ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 685 bits (1768), Expect = 0.0
Identities = 358/562 (63%), Positives = 408/562 (72%), Gaps = 13/562 (2%)
Frame = +3
Query: 21 MAILATLP--AKLFPSHPSKPQISEQXXXXXXXXXXXXXXXXXXXXLIKK----TAPQNP 182
M ILATLP + LF S P P ++ K T P P
Sbjct: 1 MVILATLPGSSSLFSSLPQGPPPNDSTTSTPPQPPIPIPKYPPPLKSQKSSRPPTKPPTP 60
Query: 183 AFKSFHRKTKYYKPVSDGVISTDGDRSVVIGESGVSYLLPGAPFEFQYSYSETPKVKPLA 362
AFK+ H ++KYYKPVSDGVI++DGDRSVVIGESGVSYLLPGAPFEFQ+SYSETPK KPLA
Sbjct: 61 AFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPLA 120
Query: 363 IREPAFLPFSPPTMPRPWTGKAPLKKSKKNIQLFDSFN------NGVKRVEMARTFPLGN 524
IREPAFLPF+PPTMPRPWTGKAPLKKSKK I LFDSFN GVKRVEM FPLG
Sbjct: 121 IREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGK 180
Query: 525 FTKYGKTREEILGVPLTKAQVRMLIKPHMSHNRQVNLGRDGLTHNMLELIHSHWKRDEVC 704
F G+TREEILG PL+KA++RML+KP++SHNRQVNLGRDGLTHNMLELIHSHWKR VC
Sbjct: 181 FPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVC 240
Query: 705 KIKCKGVPTVDMDNVCHHVEEKTGGKIIHRVGGVLYLFRGRNYNYRNRPQYPVMLWKPAA 884
K++CKGVPT+DMDNVCHH+EEKTGGKIIHRVGGV+YLFRGRNYNYR RPQYPVMLWKPAA
Sbjct: 241 KVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAA 300
Query: 885 PVYPKLIQEAPEGLTKFEADNLRMKGESLLPICKLAKNGTYNNLVNNVRNAFEGSSLVKV 1064
PVYPKLIQEAPEGLTKFEAD LRMKG++L+PIC+L KNG Y +LV +VR+AFEGS LVK+
Sbjct: 301 PVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKI 360
Query: 1065 NCQGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSIYPEAXXXXXXXXXXXX 1244
+C+GMHA+DYKK+GAKLKELVPCVLLSFDDEQIL WRG WKS+Y A
Sbjct: 361 DCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVA 420
Query: 1245 XXXXXXXXLGKTADVIQRPSAKSLS-TYRLISLWKRALESSKALLLDEITLGPDALLEKV 1421
G R K++S + +++SLWK A+ESSKALLLDE LGPDALL+ V
Sbjct: 421 SGLEGS---GIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDETGLGPDALLKVV 477
Query: 1422 EEFEDKCQAKEHSYPALILSTEDNASPKTDCQNNFEFEIHXXXXXXXXXXXXXXXXXGDL 1601
EEFE QA EHSYPAL++S+ED + E + +
Sbjct: 478 EEFEGISQATEHSYPALVMSSEDGTGGTKAEYEGYNSEDY-SEDEMYNDDDDDEYLVNES 536
Query: 1602 LEGTESSVPCGSLPVDSLAEQL 1667
LE ES VP GSLPVD LA+QL
Sbjct: 537 LEEMESPVPLGSLPVDLLAKQL 558
>ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 679 bits (1752), Expect = 0.0
Identities = 357/562 (63%), Positives = 404/562 (71%), Gaps = 13/562 (2%)
Frame = +3
Query: 21 MAILATLP--AKLFPSHPSKPQISEQXXXXXXXXXXXXXXXXXXXXLIKK----TAPQNP 182
M ILATLP + LF S P P + K T P P
Sbjct: 1 MVILATLPGSSSLFSSLPQGPPPNASTTSTPPQPPIPIPKYPPPLKSQKSPRPPTKPSTP 60
Query: 183 AFKSFHRKTKYYKPVSDGVISTDGDRSVVIGESGVSYLLPGAPFEFQYSYSETPKVKPLA 362
AFK+ H ++KYYKPVSDGVI++DGDRSVVIGESGVSYLL GAPFEFQ+SYSETPK KPLA
Sbjct: 61 AFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLAGAPFEFQFSYSETPKAKPLA 120
Query: 363 IREPAFLPFSPPTMPRPWTGKAPLKKSKKNIQLFDSFN------NGVKRVEMARTFPLGN 524
IREPAFLPF+PPTMPRPWTGKAPLKKSKK I LFDSFN GVKRVEM FPLG
Sbjct: 121 IREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGK 180
Query: 525 FTKYGKTREEILGVPLTKAQVRMLIKPHMSHNRQVNLGRDGLTHNMLELIHSHWKRDEVC 704
F G+TREEILG PL+KA++RML+KP++SHNRQVNLGRDGLTHNMLELIHSHWKR VC
Sbjct: 181 FPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVC 240
Query: 705 KIKCKGVPTVDMDNVCHHVEEKTGGKIIHRVGGVLYLFRGRNYNYRNRPQYPVMLWKPAA 884
K+ CKGVPT+DMDNVCHH+EEKTGGKIIHRVGGV+YLFRGRNYNYR RPQYPVMLWKPAA
Sbjct: 241 KVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAA 300
Query: 885 PVYPKLIQEAPEGLTKFEADNLRMKGESLLPICKLAKNGTYNNLVNNVRNAFEGSSLVKV 1064
PVYPKLIQEAPEGLTKFEAD LRMKG +L+PIC+L KNG Y +LV +VR+AFEGS LVK+
Sbjct: 301 PVYPKLIQEAPEGLTKFEADELRMKGXNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKI 360
Query: 1065 NCQGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSIYPEAXXXXXXXXXXXX 1244
+C+GMHA+DYKK+GAKLKE VPCVLLSFDDEQIL WRG WKS+Y A
Sbjct: 361 DCKGMHASDYKKIGAKLKESVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVA 420
Query: 1245 XXXXXXXXLGKTADVIQRPSAKSLS-TYRLISLWKRALESSKALLLDEITLGPDALLEKV 1421
G R K++S + +++SLWK A+ESSKALLLDEI LGPDALL+ V
Sbjct: 421 SGLEGS---GVPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVV 477
Query: 1422 EEFEDKCQAKEHSYPALILSTEDNASPKTDCQNNFEFEIHXXXXXXXXXXXXXXXXXGDL 1601
EEFE QA EHSYPAL++S+ED + E + +
Sbjct: 478 EEFEGISQATEHSYPALVMSSEDGTGGTKAEHEGYNSEDY--SEDEMYNDDDDEYLVNES 535
Query: 1602 LEGTESSVPCGSLPVDSLAEQL 1667
LE ES VP GSLPVD LA+QL
Sbjct: 536 LEEMESPVPLGSLPVDLLAKQL 557
>gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 666 bits (1718), Expect = 0.0
Identities = 328/503 (65%), Positives = 389/503 (77%), Gaps = 6/503 (1%)
Frame = +3
Query: 177 NPAFKSFHRKTKYYKPVSDGVISTDGDRSVVIGESGVSYLLPGAPFEFQYSYSETPKVKP 356
NPA K+FHR++KYYKPV DGVIS++G+R+VVIG+SGVSYLLPGAPFEFQYSYSETP VKP
Sbjct: 105 NPALKTFHRRSKYYKPVKDGVISSNGERAVVIGDSGVSYLLPGAPFEFQYSYSETPNVKP 164
Query: 357 LAIREPAFLPFSPPTMPRPWTGKAPLKKSKKNIQLFDSFN------NGVKRVEMARTFPL 518
+AIREPAFLPF+PPTMPRPWTGKAPLK SKK I LFDSFN GVK+V++ FPL
Sbjct: 165 IAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVQLPGPFPL 224
Query: 519 GNFTKYGKTREEILGVPLTKAQVRMLIKPHMSHNRQVNLGRDGLTHNMLELIHSHWKRDE 698
G + K GK+REEILG PL ++RML+KPH+SHNRQVNLGRDGLTHNMLELIHSHWKR
Sbjct: 225 GQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQR 284
Query: 699 VCKIKCKGVPTVDMDNVCHHVEEKTGGKIIHRVGGVLYLFRGRNYNYRNRPQYPVMLWKP 878
VCK++CKGVPTVDMDN+CHH+EEKTGGKIIHRVGGVLYLFRGRNYNYR RPQYPVMLWKP
Sbjct: 285 VCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKP 344
Query: 879 AAPVYPKLIQEAPEGLTKFEADNLRMKGESLLPICKLAKNGTYNNLVNNVRNAFEGSSLV 1058
AAPVYPKLIQEAPEGLTK EA+ LRMKG++LLPICKLAKNG Y +LV++VR+AFEGS LV
Sbjct: 345 AAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILV 404
Query: 1059 KVNCQGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSIYPEAXXXXXXXXXX 1238
K++C GMH +DYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKS+ +
Sbjct: 405 KIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPSRAS 464
Query: 1239 XXXXXXXXXXLGKTADVIQRPSAKSLSTYRLISLWKRALESSKALLLDEITLGPDALLEK 1418
+ +D++ ++ ++ LW+RA++S+KAL+LDEI L PD LLE+
Sbjct: 465 SNDSLGSSGESVENSDLLNGNHHTIKTSPKMKLLWERAIDSNKALMLDEIGLAPDELLER 524
Query: 1419 VEEFEDKCQAKEHSYPALILSTEDNASPKTDCQNNFEFEIHXXXXXXXXXXXXXXXXXGD 1598
VEEFE QA EHSYPA I S+E+ +SP ++ E + D
Sbjct: 525 VEEFERISQATEHSYPAFITSSEEVSSPADSPESQDHSEANYNSDDDVGREE-------D 577
Query: 1599 LLEGTESSVPCGSLPVDSLAEQL 1667
L + + VP GSLPVD +A++L
Sbjct: 578 LFDNVDPLVPLGSLPVDIIAKKL 600
>ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 664 bits (1714), Expect = 0.0
Identities = 332/505 (65%), Positives = 386/505 (76%), Gaps = 6/505 (1%)
Frame = +3
Query: 171 PQNPAFKSFHRKTKYYKPVSDGVISTDGDRSVVIGESGVSYLLPGAPFEFQYSYSETPKV 350
P NPA K+FH ++KYYKPV DGVIS++G+R+VVIG+SGVSY LPGAPFEFQYSYSETPKV
Sbjct: 103 PPNPALKTFHHRSKYYKPVKDGVISSNGERAVVIGDSGVSYHLPGAPFEFQYSYSETPKV 162
Query: 351 KPLAIREPAFLPFSPPTMPRPWTGKAPLKKSKKNIQLFDSFN------NGVKRVEMARTF 512
KP+AIREPAFLPF+PPTMPRPWTGKAPLK SKK I LFDSFN GVK V++ F
Sbjct: 163 KPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKLVQLPGPF 222
Query: 513 PLGNFTKYGKTREEILGVPLTKAQVRMLIKPHMSHNRQVNLGRDGLTHNMLELIHSHWKR 692
PLG K GK+REEILG PL ++RML+KPH+SHNRQVNLGRDGLTHNMLELIHSHWKR
Sbjct: 223 PLGQHPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKR 282
Query: 693 DEVCKIKCKGVPTVDMDNVCHHVEEKTGGKIIHRVGGVLYLFRGRNYNYRNRPQYPVMLW 872
VCK++CKGVPTVDMDN+CHH+EEKTGGKIIHRVGGVLYLFRGRNYNYR RPQYPVMLW
Sbjct: 283 QRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLW 342
Query: 873 KPAAPVYPKLIQEAPEGLTKFEADNLRMKGESLLPICKLAKNGTYNNLVNNVRNAFEGSS 1052
KPAAPVYPKLIQEAPEGLTK EA+ LRMKG++LLPICKLAKNG Y +LVN+VR+AFEGS
Sbjct: 343 KPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSI 402
Query: 1053 LVKVNCQGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSIYPEAXXXXXXXX 1232
LVK++C GMH +DYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKSI +
Sbjct: 403 LVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIISDDCSAPLPSR 462
Query: 1233 XXXXXXXXXXXXLGKTADVIQRPSAKSLSTYRLISLWKRALESSKALLLDEITLGPDALL 1412
+ +D++ ++ ++ LW+ A++S+KALLLDEI L PD LL
Sbjct: 463 ASSNDSLGSPGESLENSDLLHDNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLL 522
Query: 1413 EKVEEFEDKCQAKEHSYPALILSTEDNASPKTDCQNNFEFEIHXXXXXXXXXXXXXXXXX 1592
EKVEEFE QA EHSYPA I S+ED +SP ++ E +
Sbjct: 523 EKVEEFERISQATEHSYPAFITSSEDVSSPDDSPKSQDHTEANYNSDDDVGREE------ 576
Query: 1593 GDLLEGTESSVPCGSLPVDSLAEQL 1667
DL + + VP GSLPVD +A++L
Sbjct: 577 -DLFDNADPLVPLGSLPVDIIAKKL 600
>ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 664 bits (1714), Expect = 0.0
Identities = 332/505 (65%), Positives = 386/505 (76%), Gaps = 6/505 (1%)
Frame = +3
Query: 171 PQNPAFKSFHRKTKYYKPVSDGVISTDGDRSVVIGESGVSYLLPGAPFEFQYSYSETPKV 350
P NPA K+FH ++KYYKPV DGVIS++G+R+VVIG+SGVSY LPGAPFEFQYSYSETPKV
Sbjct: 102 PPNPALKTFHHRSKYYKPVKDGVISSNGERAVVIGDSGVSYHLPGAPFEFQYSYSETPKV 161
Query: 351 KPLAIREPAFLPFSPPTMPRPWTGKAPLKKSKKNIQLFDSFN------NGVKRVEMARTF 512
KP+AIREPAFLPF+PPTMPRPWTGKAPLK SKK I LFDSFN GVK V++ F
Sbjct: 162 KPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKLVQLPGPF 221
Query: 513 PLGNFTKYGKTREEILGVPLTKAQVRMLIKPHMSHNRQVNLGRDGLTHNMLELIHSHWKR 692
PLG K GK+REEILG PL ++RML+KPH+SHNRQVNLGRDGLTHNMLELIHSHWKR
Sbjct: 222 PLGQHPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKR 281
Query: 693 DEVCKIKCKGVPTVDMDNVCHHVEEKTGGKIIHRVGGVLYLFRGRNYNYRNRPQYPVMLW 872
VCK++CKGVPTVDMDN+CHH+EEKTGGKIIHRVGGVLYLFRGRNYNYR RPQYPVMLW
Sbjct: 282 QRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLW 341
Query: 873 KPAAPVYPKLIQEAPEGLTKFEADNLRMKGESLLPICKLAKNGTYNNLVNNVRNAFEGSS 1052
KPAAPVYPKLIQEAPEGLTK EA+ LRMKG++LLPICKLAKNG Y +LVN+VR+AFEGS
Sbjct: 342 KPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSI 401
Query: 1053 LVKVNCQGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSIYPEAXXXXXXXX 1232
LVK++C GMH +DYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKSI +
Sbjct: 402 LVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIISDDRSAPLPSR 461
Query: 1233 XXXXXXXXXXXXLGKTADVIQRPSAKSLSTYRLISLWKRALESSKALLLDEITLGPDALL 1412
+ +D++ ++ ++ LW+ A++S+KALLLDEI L PD LL
Sbjct: 462 ASSNDSLGSPGESLENSDLLHGNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLL 521
Query: 1413 EKVEEFEDKCQAKEHSYPALILSTEDNASPKTDCQNNFEFEIHXXXXXXXXXXXXXXXXX 1592
EKVEEFE QA EHSYPA I S+ED +SP ++ E +
Sbjct: 522 EKVEEFERISQATEHSYPAFITSSEDVSSPDDSPKSQDHTEANYNSDDDVGREE------ 575
Query: 1593 GDLLEGTESSVPCGSLPVDSLAEQL 1667
DL + + VP GSLPVD +A++L
Sbjct: 576 -DLFDNADPLVPLGSLPVDIIAKKL 599