BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006966
         (1473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop...   684   0.0  
sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch...   670   0.0  
ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|1...   659   0.0  
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop...   657   0.0  
ref|XP_002519282.1| tex protein-relatedtranscription accessory p...   655   0.0  

>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
            gi|296083203|emb|CBI22839.3| unnamed protein product
            [Vitis vinifera]
          Length = 410

 Score =  684 bits (1765), Expect = 0.0
 Identities = 354/406 (87%), Positives = 373/406 (91%), Gaps = 1/406 (0%)
 Frame = +2

Query: 41   LAHQFSGLRCPPLSSHLSKKQPFTPNK-QKSVFFPIVSAVAISNAQTKERQRLKEMFEEA 217
            LA QF+GLRCPP+SS    K PF+P + QK  F  IVSAVAISNAQTKER +LKEMFE+A
Sbjct: 4    LAQQFTGLRCPPISSSRLSK-PFSPKQPQKPSFVRIVSAVAISNAQTKERLKLKEMFEDA 62

Query: 218  YERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSSAYL 397
            YERCRTAP EG+SF+ +DF++AL+KYDFNSEIGTKVKGTVFCT+ NGALVDITAKSSAYL
Sbjct: 63   YERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSAYL 122

Query: 398  PVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE 577
            PV EACIHKIKHVEEAGI PGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE
Sbjct: 123  PVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAE 182

Query: 578  DVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVDEEQSRL 757
            DVVVKGKV+  NKGGVVA+VEGLRGFVPFSQISSK+ A          KFVEVDEEQSRL
Sbjct: 183  DVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQSRL 242

Query: 758  VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 937
            VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DIATV
Sbjct: 243  VLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATV 302

Query: 938  LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 1117
            LQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA
Sbjct: 303  LQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQA 362

Query: 1118 EAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 1255
            EAMARADMLRFQPESGLTL+SDGILGP+S DLPAEGLDLSDVPPAE
Sbjct: 363  EAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAE 408


>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
            Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
            ribosomal protein S1 [Spinacia oleracea]
            gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1
            [Spinacia oleracea]
          Length = 411

 Score =  670 bits (1728), Expect = 0.0
 Identities = 347/409 (84%), Positives = 377/409 (92%), Gaps = 3/409 (0%)
 Frame = +2

Query: 35   SSLAHQFSG-LRCPPLS-SHLSKKQPFTPNKQ-KSVFFPIVSAVAISNAQTKERQRLKEM 205
            +SLA Q +G LRCPPLS S+LSK  PF+P    K  F PIVSAVA+SNAQT+ERQ+LK++
Sbjct: 2    ASLAQQLAGGLRCPPLSNSNLSK--PFSPKHTLKPRFSPIVSAVAVSNAQTRERQKLKQL 59

Query: 206  FEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKS 385
            FE+AYERCR APMEG+SFT++DFH AL+KYDFNSE+G++VKGTVFCT+ANGALVDITAKS
Sbjct: 60   FEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKS 119

Query: 386  SAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQ 565
            SAYLP+ EACI++IK+VEEAGI PGVREEFVIIGENEADDSLILSLR IQY+LAWERCRQ
Sbjct: 120  SAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQ 179

Query: 566  LQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVDEE 745
            LQAEDVVVKGK++  NKGGVVA+VEGLRGFVPFSQISSKS+A          KFVEVDEE
Sbjct: 180  LQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEE 239

Query: 746  QSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 925
            QSRLV+SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+D
Sbjct: 240  QSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSD 299

Query: 926  IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR 1105
            IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR
Sbjct: 300  IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQR 359

Query: 1106 IAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPA 1252
            IAQAEAMARADMLRFQPESGLTLSSDGILGPL+ DLPAEGLDLS VPPA
Sbjct: 360  IAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408


>ref|XP_002311368.1| predicted protein [Populus trichocarpa] gi|118485696|gb|ABK94698.1|
            unknown [Populus trichocarpa] gi|222851188|gb|EEE88735.1|
            predicted protein [Populus trichocarpa]
          Length = 421

 Score =  659 bits (1701), Expect = 0.0
 Identities = 339/409 (82%), Positives = 371/409 (90%), Gaps = 2/409 (0%)
 Frame = +2

Query: 35   SSLAHQFSGLRCPPLS-SHLSKKQP-FTPNKQKSVFFPIVSAVAISNAQTKERQRLKEMF 208
            +SLA QF+GLRCPP+S S L+++   F+  K+ + F     AVAISNAQTKER++LK++F
Sbjct: 2    ASLAQQFAGLRCPPISISRLTERAATFSKPKRAANFVVTAKAVAISNAQTKEREKLKQLF 61

Query: 209  EEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAKSS 388
            EEAYERCRTAPMEG+SFTVEDFH+AL+ YDFNSEIGT+VKGTVF T+ NGALVDITAKSS
Sbjct: 62   EEAYERCRTAPMEGVSFTVEDFHSALDAYDFNSEIGTRVKGTVFMTDNNGALVDITAKSS 121

Query: 389  AYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQL 568
            AYLPVQEA IH+IK +EEAGI PG+REEFVIIGENEADDSLILSLRSI Y+LAWERCRQL
Sbjct: 122  AYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEADDSLILSLRSIHYELAWERCRQL 181

Query: 569  QAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVDEEQ 748
            QAEDV+VKGKV+ GNKGG+VA+VEGLRGFVPFSQISSKS            KFV+VDEEQ
Sbjct: 182  QAEDVIVKGKVVGGNKGGLVAVVEGLRGFVPFSQISSKSTPEELLDKEFPLKFVDVDEEQ 241

Query: 749  SRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 928
            SRL+LSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV+DI
Sbjct: 242  SRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDI 301

Query: 929  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 1108
            ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI
Sbjct: 302  ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 361

Query: 1109 AQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 1255
            AQAEAMARADMLRFQPESGLTLSSDGIL PL+ D+PAEGLDLSDV PA+
Sbjct: 362  AQAEAMARADMLRFQPESGLTLSSDGILSPLNSDMPAEGLDLSDVSPAD 410


>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
            sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
            ribosomal protein S1, chloroplastic-like [Cucumis
            sativus]
          Length = 413

 Score =  657 bits (1695), Expect = 0.0
 Identities = 338/412 (82%), Positives = 371/412 (90%), Gaps = 5/412 (1%)
 Frame = +2

Query: 35   SSLAHQFSGLRCPPLSSHLSKKQPFTPNK--QKSVFFPIVSAVA---ISNAQTKERQRLK 199
            +S+A QF+GLRC PLSS    K PF+      KS   P+ +AV    I + QT+ER +LK
Sbjct: 2    ASMAQQFTGLRCAPLSSSRLSK-PFSSKHFLNKSRSLPVQAAVISGPIPSPQTRERFKLK 60

Query: 200  EMFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITA 379
            E+FEEAYERCR AP+EGISFT+EDFH ALEKYDF+SE+GTKVKGTVFCT+ NGALVDITA
Sbjct: 61   EVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITA 120

Query: 380  KSSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERC 559
            KSSAYLP+QEACIH+IKHVEEAG+FPG+REEFVIIGENE+DDSLILSLRSIQYDLAWERC
Sbjct: 121  KSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERC 180

Query: 560  RQLQAEDVVVKGKVISGNKGGVVAIVEGLRGFVPFSQISSKSAAXXXXXXXXXXKFVEVD 739
            RQLQAEDVVVKGKV+  NKGGVVA+VEGLRGFVPFSQIS+KS A          KFVEVD
Sbjct: 181  RQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVD 240

Query: 740  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 919
            EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR+
Sbjct: 241  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRI 300

Query: 920  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 1099
            +DIATVLQPGD+LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 301  SDIATVLQPGDSLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 360

Query: 1100 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 1255
            QRIAQAEA+ARADMLRFQPESGLTL++DGILGP++P+LP EGLDL+DVPPAE
Sbjct: 361  QRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAE 412


>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative [Ricinus
            communis] gi|223541597|gb|EEF43146.1| tex
            protein-relatedtranscription accessory protein, putative
            [Ricinus communis]
          Length = 412

 Score =  655 bits (1690), Expect = 0.0
 Identities = 343/412 (83%), Positives = 373/412 (90%), Gaps = 5/412 (1%)
 Frame = +2

Query: 35   SSLAHQFSGLRCPPLSS-HLSKKQPF---TPNKQKSVFFPIVSAVAISNAQTKERQRLKE 202
            +SLA QF+GLRC  LS+  ++KK      +   +KS F  +VSAVAISNAQTKER++LK+
Sbjct: 2    ASLAQQFTGLRCTALSNCRVTKKASSLLSSSRPRKSRF--VVSAVAISNAQTKEREKLKQ 59

Query: 203  MFEEAYERCRTAPMEGISFTVEDFHNALEKYDFNSEIGTKVKGTVFCTEANGALVDITAK 382
            +FE+AYERCRTAPMEG++FT EDFH+ALEKYDFNSEIGT VKGTVF T+ANGA+VDITAK
Sbjct: 60   LFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFMTDANGAVVDITAK 119

Query: 383  SSAYLPVQEACIHKIKHVEEAGIFPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCR 562
            SSAYLPVQEACIHKIKHVEEAGI PG+ +EFVIIGENEADDSLILSLR+IQYDL+WERCR
Sbjct: 120  SSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEADDSLILSLRAIQYDLSWERCR 179

Query: 563  QLQAEDVVVKGKVISGNKGGVVAIVEG-LRGFVPFSQISSKSAAXXXXXXXXXXKFVEVD 739
            QLQAEDV+VKGKV+  NKGGVVAIVEG LRGFVPFSQISSKS A          KFV+VD
Sbjct: 180  QLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKFVDVD 239

Query: 740  EEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 919
            EEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDRV
Sbjct: 240  EEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 299

Query: 920  ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 1099
            +DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR
Sbjct: 300  SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 359

Query: 1100 QRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSPDLPAEGLDLSDVPPAE 1255
            QRIAQAEAMARADMLRFQPESGL+LSSDGILGP++ D+PAEGLDLSDVP AE
Sbjct: 360  QRIAQAEAMARADMLRFQPESGLSLSSDGILGPVTSDMPAEGLDLSDVPSAE 411