BLASTX nr result
ID: Coptis24_contig00006902
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006902
(576 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho... 77 5e-40
ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 81 9e-40
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 78 9e-40
emb|CBI26820.3| unnamed protein product [Vitis vinifera] 78 9e-40
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 78 9e-40
>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
[Populus trichocarpa]
Length = 1133
Score = 77.0 bits (188), Expect(3) = 5e-40
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = -2
Query: 386 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 228
K +AP+TS +RSFT +VA++ + PDMEVDGFE+++DD YYK YD+KLGNLM
Sbjct: 949 KDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLM 1001
Score = 72.0 bits (175), Expect(3) = 5e-40
Identities = 36/58 (62%), Positives = 42/58 (72%)
Frame = -3
Query: 565 SPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRVIGNLFR 392
S C++LA+ FSIAVDFP TGVPA I +L E PDFMEK DK +Y S+ VIG LFR
Sbjct: 889 SEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFR 946
Score = 61.6 bits (148), Expect(3) = 5e-40
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = -1
Query: 138 YEIKSEAEILCGSIMKLKKSFNSRKDVEAIKYAARSIKKEARTWF 4
Y IK+EAE+L GS MK+ KSF ++D EAI A RS+KKEAR+WF
Sbjct: 1004 YGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWF 1048
>ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent
RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 80.9 bits (198), Expect(3) = 9e-40
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = -3
Query: 565 SPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRVIGNLFR 392
S C++LAKLFS+AVDFP TGVPA+I HL+V E PDFMEK D+ +Y S +VIG LFR
Sbjct: 886 SSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFR 943
Score = 65.5 bits (158), Expect(3) = 9e-40
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = -1
Query: 138 YEIKSEAEILCGSIMKLKKSFNSRKDVEAIKYAARSIKKEARTWF 4
Y IKSEAE+L GSIM++ KSF R+D EAI A RS++KEARTWF
Sbjct: 1001 YGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWF 1045
Score = 63.5 bits (153), Expect(3) = 9e-40
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = -2
Query: 386 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 228
K +AP S +RSFT +VA+R + DMEV+GFE++++D Y+K YD+KLGNL+
Sbjct: 946 KDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLL 998
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 77.8 bits (190), Expect(3) = 9e-40
Identities = 40/55 (72%), Positives = 42/55 (76%)
Frame = -3
Query: 556 CIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRVIGNLFR 392
C +LAKLFSIAVDFP TGVPA I +L V E PDFMEK DK TY SQ VIG LFR
Sbjct: 882 CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFR 936
Score = 68.9 bits (167), Expect(3) = 9e-40
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -2
Query: 386 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 228
K +AP +RSFT +VA++S+ PDMEV GFE+++ D YYK EYD+KLGNLM
Sbjct: 939 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 991
Score = 63.2 bits (152), Expect(3) = 9e-40
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = -1
Query: 138 YEIKSEAEILCGSIMKLKKSFNSRKDVEAIKYAARSIKKEARTWF 4
Y IK+E+EIL GSIM++ KSF+ RKD EAI A +S++KEARTWF
Sbjct: 994 YGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWF 1038
>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 77.8 bits (190), Expect(3) = 9e-40
Identities = 40/55 (72%), Positives = 42/55 (76%)
Frame = -3
Query: 556 CIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRVIGNLFR 392
C +LAKLFSIAVDFP TGVPA I +L V E PDFMEK DK TY SQ VIG LFR
Sbjct: 680 CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFR 734
Score = 68.9 bits (167), Expect(3) = 9e-40
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -2
Query: 386 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 228
K +AP +RSFT +VA++S+ PDMEV GFE+++ D YYK EYD+KLGNLM
Sbjct: 737 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 789
Score = 63.2 bits (152), Expect(3) = 9e-40
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = -1
Query: 138 YEIKSEAEILCGSIMKLKKSFNSRKDVEAIKYAARSIKKEARTWF 4
Y IK+E+EIL GSIM++ KSF+ RKD EAI A +S++KEARTWF
Sbjct: 792 YGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWF 836
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 77.8 bits (190), Expect(3) = 9e-40
Identities = 40/55 (72%), Positives = 42/55 (76%)
Frame = -3
Query: 556 CIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRVIGNLFR 392
C +LAKLFSIAVDFP TGVPA I +L V E PDFMEK DK TY SQ VIG LFR
Sbjct: 415 CTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFR 469
Score = 68.9 bits (167), Expect(3) = 9e-40
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -2
Query: 386 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 228
K +AP +RSFT +VA++S+ PDMEV GFE+++ D YYK EYD+KLGNLM
Sbjct: 472 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 524
Score = 63.2 bits (152), Expect(3) = 9e-40
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = -1
Query: 138 YEIKSEAEILCGSIMKLKKSFNSRKDVEAIKYAARSIKKEARTWF 4
Y IK+E+EIL GSIM++ KSF+ RKD EAI A +S++KEARTWF
Sbjct: 527 YGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWF 571