BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006859
         (1362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275875.1| PREDICTED: transcription factor tau subunit ...   328   2e-87
emb|CBI24753.3| unnamed protein product [Vitis vinifera]              327   3e-87
dbj|BAF00928.1| hypothetical protein [Arabidopsis thaliana]           306   8e-81
ref|NP_190510.3| Transcription factor IIIC, subunit 5 [Arabidops...   305   2e-80
gb|AAL38268.1| unknown protein [Arabidopsis thaliana] gi|2213612...   300   8e-79

>ref|XP_002275875.1| PREDICTED: transcription factor tau subunit sfc1-like [Vitis
            vinifera]
          Length = 568

 Score =  328 bits (842), Expect = 2e-87
 Identities = 182/369 (49%), Positives = 230/369 (62%), Gaps = 5/369 (1%)
 Frame = +3

Query: 3    AIDYNIEEIPRKINWEDHITRGSDHWEWQKAVSVLFDERPIWHTISLNHCLLDKGLRVGA 182
            AID+ I+EIP+K+NWE +I +GS+ WEWQ AVS LFDERPIW   +L   LLDKGL VG 
Sbjct: 219  AIDFEIKEIPKKVNWEQYIPKGSEQWEWQMAVSNLFDERPIWPKGALTERLLDKGLNVGD 278

Query: 183  HMFKRLLFRTAYYFSTGPYRQLWIRKGYDPRKDPESRIYQRIDFRVPPPLRHIGDVHATD 362
            +  +RLLFRTAYYFS GP+ + WIRKGYDPRK+P+S IYQRIDFRVPP LR   D +A +
Sbjct: 279  YTLRRLLFRTAYYFSNGPFLRFWIRKGYDPRKNPDSCIYQRIDFRVPPSLRSYCDANAAN 338

Query: 363  KLKHMWKDLCALRVFPCKCQISLQLFELDDDYIREEIRKP-PEDTCSCSTGWFSSFVHDS 539
             LK  W+D+C+ RVFP KC  SLQLFEL DDYI++EIRKP  + TC+ +TGWFS  V +S
Sbjct: 339  GLKQRWEDICSFRVFPYKCHTSLQLFELADDYIQQEIRKPLKQTTCTGATGWFSYRVLES 398

Query: 540  LKLRIAVRFLSVYPKMGAESLLKSASLRFEKSKRARALKSDFRPKEME-HQLNKESSSHL 716
            L+L + VRFLS+ P+  AE LLKSAS RFEKSKR    +++ RP E    ++NKE     
Sbjct: 399  LRLCVMVRFLSICPETSAEYLLKSASDRFEKSKRMHIYENNLRPNEEGIQEVNKELEGDK 458

Query: 717  SKVSPTKLKD---TDLVFDNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQVDA 887
             K  P  + D    ++  +NG+                                S     
Sbjct: 459  DKEEPNDVDDDEEDEMEAENGE----------------EELDAYEALDMKIVERSVNTLR 502

Query: 888  GDGDFTLNPLSYPIGENISKNYLQELFGSFPSTEAASNKDQEVEFSDAEYQIFEQDSDDN 1067
                F++  L     ENIS++YLQ LFGSF  T+A   + Q+ + SD EYQI+EQDS   
Sbjct: 503  SSFGFSIYILDLD-AENISRDYLQGLFGSFSFTKAGGGEVQDADTSDGEYQIYEQDS--L 559

Query: 1068 ANYSGDDDY 1094
              YS DDDY
Sbjct: 560  GEYSDDDDY 568


>emb|CBI24753.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  327 bits (839), Expect = 3e-87
 Identities = 179/364 (49%), Positives = 228/364 (62%), Gaps = 5/364 (1%)
 Frame = +3

Query: 18   IEEIPRKINWEDHITRGSDHWEWQKAVSVLFDERPIWHTISLNHCLLDKGLRVGAHMFKR 197
            +E IP+K+NWE +I +GS+ WEWQ AVS LFDERPIW   +L   LLDKGL VG +  +R
Sbjct: 261  VEIIPKKVNWEQYIPKGSEQWEWQMAVSNLFDERPIWPKGALTERLLDKGLNVGDYTLRR 320

Query: 198  LLFRTAYYFSTGPYRQLWIRKGYDPRKDPESRIYQRIDFRVPPPLRHIGDVHATDKLKHM 377
            LLFRTAYYFS GP+ + WIRKGYDPRK+P+S IYQRIDFRVPP LR   D +A + LK  
Sbjct: 321  LLFRTAYYFSNGPFLRFWIRKGYDPRKNPDSCIYQRIDFRVPPSLRSYCDANAANGLKQR 380

Query: 378  WKDLCALRVFPCKCQISLQLFELDDDYIREEIRKP-PEDTCSCSTGWFSSFVHDSLKLRI 554
            W+D+C+ RVFP KC  SLQLFEL DDYI++EIRKP  + TC+ +TGWFS  V +SL+L +
Sbjct: 381  WEDICSFRVFPYKCHTSLQLFELADDYIQQEIRKPLKQTTCTGATGWFSYRVLESLRLCV 440

Query: 555  AVRFLSVYPKMGAESLLKSASLRFEKSKRARALKSDFRPKEME-HQLNKESSSHLSKVSP 731
             VRFLS+ P+  AE LLKSAS RFEKSKR    +++ RP E    ++NKE      K  P
Sbjct: 441  MVRFLSICPETSAEYLLKSASDRFEKSKRMHIYENNLRPNEEGIQEVNKELEGDKDKEEP 500

Query: 732  TKLKD---TDLVFDNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQVDAGDGDF 902
              + D    ++  +NG+                                +  +   D + 
Sbjct: 501  NDVDDDEEDEMEAENGE-------------------------EELDAYEALDMVGEDDED 535

Query: 903  TLNPLSYPIGENISKNYLQELFGSFPSTEAASNKDQEVEFSDAEYQIFEQDSDDNANYSG 1082
            +L   SY   ENIS++YLQ LFGSF  T+A   + Q+ + SD EYQI+EQDS     YS 
Sbjct: 536  SLQSRSYLDAENISRDYLQGLFGSFSFTKAGGGEVQDADTSDGEYQIYEQDS--LGEYSD 593

Query: 1083 DDDY 1094
            DDDY
Sbjct: 594  DDDY 597


>dbj|BAF00928.1| hypothetical protein [Arabidopsis thaliana]
          Length = 574

 Score =  306 bits (784), Expect = 8e-81
 Identities = 160/366 (43%), Positives = 223/366 (60%), Gaps = 2/366 (0%)
 Frame = +3

Query: 3    AIDYNIEEIPRKINWEDHITRGSDHWEWQKAVSVLFDERPIWHTISLNHCLLDKGLRVGA 182
            AID++++EIP+K+ WED ++R S+HW+WQ AVS LF+ERPIW   S+   LLDKGL+   
Sbjct: 217  AIDFSVKEIPKKLKWEDFVSRSSNHWQWQVAVSALFEERPIWTRDSVVQRLLDKGLKCTH 276

Query: 183  HMFKRLLFRTAYYFSTGPYRQLWIRKGYDPRKDPESRIYQRIDFRVPPPLRHIGDVHATD 362
            HM  R L R AYYFS+GP+ + WI++GYDPR DPESR+YQR++FRVPP LR   D +AT+
Sbjct: 277  HMLNRFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRMEFRVPPELRGYCDANATN 336

Query: 363  KLKHMWKDLCALRVFPCKCQISLQLFELDDDYIREEIRKPP-EDTCSCSTGWFSSFVHDS 539
              K  W D+CA ++FP KCQ  LQLFELDD+YI+ EIRKPP + TCS  +GWFS  + D+
Sbjct: 337  NSKPSWNDICAFKLFPFKCQTFLQLFELDDEYIQREIRKPPKQTTCSHKSGWFSEAMLDT 396

Query: 540  LKLRIAVRFLSVYPKMGAESLLKSASLRFEKSKRARALKSDFRPKEMEHQLNKESSSHLS 719
            L+LR+AVRF+SV+P+ G E + KS    FE+SK+ +  K   +P  ++H+   + S  + 
Sbjct: 397  LRLRVAVRFVSVFPETGFEDVFKSIQEEFERSKKVQIQKETLKPSLVKHREATKGSEDIE 456

Query: 720  KVSPTKLKDTDLVFDNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQVDAGDGD 899
                        V ++G+                                   + AGD +
Sbjct: 457  TFKSVNENVDANVNEDGE-----------------DENLDDEDEDEEEEEELDMAAGDNE 499

Query: 900  FTLNPLSYPIGENISKNYLQELFGSFPSTEAASNKDQEV-EFSDAEYQIFEQDSDDNANY 1076
             +L+   Y   EN S+ YLQ LF SFPS+E     D  V + SD E+QI+E++S+    Y
Sbjct: 500  ISLDSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESE--GLY 557

Query: 1077 SGDDDY 1094
            S DDD+
Sbjct: 558  SIDDDH 563


>ref|NP_190510.3| Transcription factor IIIC, subunit 5 [Arabidopsis thaliana]
            gi|332645018|gb|AEE78539.1| Transcription factor IIIC,
            subunit 5 [Arabidopsis thaliana]
          Length = 574

 Score =  305 bits (780), Expect = 2e-80
 Identities = 159/366 (43%), Positives = 223/366 (60%), Gaps = 2/366 (0%)
 Frame = +3

Query: 3    AIDYNIEEIPRKINWEDHITRGSDHWEWQKAVSVLFDERPIWHTISLNHCLLDKGLRVGA 182
            AID++++EIP+K+ WED ++R S+HW+WQ AVS LF+ERPIW   S+   LLDKGL+   
Sbjct: 217  AIDFSVKEIPKKLKWEDFVSRSSNHWQWQVAVSALFEERPIWTRDSVVQRLLDKGLKCTH 276

Query: 183  HMFKRLLFRTAYYFSTGPYRQLWIRKGYDPRKDPESRIYQRIDFRVPPPLRHIGDVHATD 362
            HM  R L R AYYFS+GP+ + WI++GYDPR DPESR+YQR++FRVPP LR   D +AT+
Sbjct: 277  HMLNRFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRMEFRVPPELRGYCDANATN 336

Query: 363  KLKHMWKDLCALRVFPCKCQISLQLFELDDDYIREEIRKPP-EDTCSCSTGWFSSFVHDS 539
              K  W D+CA ++FP KCQ  LQLFELDD+YI+ EIRKPP + TCS  +GWFS  + D+
Sbjct: 337  NSKPSWNDICAFKLFPFKCQTFLQLFELDDEYIQREIRKPPKQTTCSHKSGWFSEAMLDT 396

Query: 540  LKLRIAVRFLSVYPKMGAESLLKSASLRFEKSKRARALKSDFRPKEMEHQLNKESSSHLS 719
            L+LR+AVRF+SV+P+ G E + KS    FE+S++ +  K   +P  ++H+   + S  + 
Sbjct: 397  LRLRVAVRFVSVFPETGFEDVFKSIQEEFERSEKVQIQKETLKPSLVKHREATKGSEDME 456

Query: 720  KVSPTKLKDTDLVFDNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQVDAGDGD 899
                        V ++G+                                   + AGD +
Sbjct: 457  TFKSVNENVDANVNEDGE-----------------DENLDDEDEDEEEEEELDMAAGDNE 499

Query: 900  FTLNPLSYPIGENISKNYLQELFGSFPSTEAASNKDQEV-EFSDAEYQIFEQDSDDNANY 1076
             +L+   Y   EN S+ YLQ LF SFPS+E     D  V + SD E+QI+E++S+    Y
Sbjct: 500  ISLDSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESE--GLY 557

Query: 1077 SGDDDY 1094
            S DDD+
Sbjct: 558  SIDDDH 563


>gb|AAL38268.1| unknown protein [Arabidopsis thaliana] gi|22136120|gb|AAM91138.1|
            unknown protein [Arabidopsis thaliana]
          Length = 425

 Score =  300 bits (767), Expect = 8e-79
 Identities = 161/369 (43%), Positives = 222/369 (60%), Gaps = 6/369 (1%)
 Frame = +3

Query: 3    AIDYNIEEIPRKINWEDHITRGSDHWEWQKAVSVLFDERPIWHTISLNHCLLDKGLRVGA 182
            AID++++EIP+ + WED+I   S+ W+WQ AVS LF+ERP+W   S+   LLDKGL    
Sbjct: 90   AIDFSVKEIPKILKWEDYIVPTSNQWKWQVAVSALFEERPVWTRDSIVQRLLDKGLTCTH 149

Query: 183  HMFKRLLFRTAYYFSTGPYRQLWIRKGYDPRKDPESRIYQRIDFRVPPPLRHIGDVHATD 362
            HM  R L R AYYFS GP+ + WI++GYDPRKDPESR++QR++FRVPP L+   D +AT+
Sbjct: 150  HMLNRFLLRAAYYFSGGPFLRFWIKRGYDPRKDPESRVFQRMEFRVPPELKGYCDSNATN 209

Query: 363  KLKHMWKDLCALRVFPCKCQISLQLFELDDDYIREEIRKPP-EDTCSCSTGWFSSFVHDS 539
            K K  W D+CA +VFP KCQ  LQLFELDD+YI++EIRKPP + TC+  TGWFS  + D+
Sbjct: 210  KSKPSWDDICAFKVFPFKCQTFLQLFELDDEYIQQEIRKPPKQTTCNYKTGWFSEALLDN 269

Query: 540  LKLRIAVRFLSVYPKMGAESLLKSASLRFEKSKRARALKSDFRPKEMEHQLNKESSSHLS 719
            L+LR+AVRF+SV+P+ G E + KS    FE+S++ R  K   +P +  HQ   E++  + 
Sbjct: 270  LRLRVAVRFVSVFPEPGFEDVFKSIQEEFERSEKTRIQKDALQPSQRNHQ---ETTKDMK 326

Query: 720  KVSPT-KLKDTDLVFDNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQVDAGDG 896
            K   T K KD D+  D                                    Y+  A D 
Sbjct: 327  KCKNTNKEKDDDVNADEDS---------------------------EDLDDEYEEAANDD 359

Query: 897  DFTLNPLSYPIGENISKNYLQELFGSFPSTEAA----SNKDQEVEFSDAEYQIFEQDSDD 1064
            D +++   Y   EN S+ YLQ LF  FPS+ +A    +N D +   SD EY I+EQ+S+ 
Sbjct: 360  DISISSHGYGDMENNSRTYLQGLFNRFPSSASALYGSANDDND---SDGEYPIYEQESNA 416

Query: 1065 NANYSGDDD 1091
              +   DD+
Sbjct: 417  LDDEEEDDE 425