BLASTX nr result
ID: Coptis24_contig00006806
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006806
(1024 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50966.1| T4.5 [Malus x robusta] 114 3e-23
emb|CAN77775.1| hypothetical protein VITISV_021887 [Vitis vinifera] 68 3e-17
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 54 3e-15
emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera] 52 8e-15
emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera] 70 6e-10
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 114 bits (286), Expect = 3e-23
Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 7/211 (3%)
Frame = -1
Query: 823 VPVKLSKEKFLLWKQLFKPILKSNNLVGFVNGSCKCPPQFLQ**RSTNKKSRVFTMG*TR 644
VP KL+++ ++ W+ LF P+LK L+G VNG CPP F++ T + F
Sbjct: 274 VPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRDPSGTCVPNASF------ 327
Query: 643 SNLADMDDCYYLGIYSPLCDRY*FCC*VMECT*-------KAFCFSNSAHVHQLKDQPQG 485
+ D + I S L ME + + F ++ HVH L+ + Q
Sbjct: 328 ETWCERDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKIQT 387
Query: 484 IKKGNSSMHDYLQKIKSISDGLAAANIIVTYGDTVQHVLRGLPNEYDPVATSLRVRTEEA 305
I KG+SSM D+L IK IS+ LAAA ++ D V ++L GLP+EY+ S+ R E
Sbjct: 388 IHKGDSSMTDFLNSIKEISNKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIETRNESV 447
Query: 304 NFDELYGLLLSEEINILERQKIAHEVSTQVF 212
DEL+GLLLS+EI++ +R+ A S F
Sbjct: 448 TADELHGLLLSKEISLQKRKTRASSSSNAPF 478
>emb|CAN77775.1| hypothetical protein VITISV_021887 [Vitis vinifera]
Length = 735
Score = 67.8 bits (164), Expect(2) = 3e-17
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Frame = -1
Query: 544 KAFCFSNSAHVHQLKDQPQGIKKGNSSMHDYLQKIKSISDGLAAANIIVTYGDTVQHVLR 365
K F + A QL+ Q +KKG S++DY+ K+++I+D L+ + V Y D + ++L
Sbjct: 119 KLFVSDSKARTLQLRFMLQSLKKGALSINDYVLKMRNIADMLSTSGKPVPYEDLILYILG 178
Query: 364 GLPNEYDPVATSLRVRTEEANFDELYGLLLSEEI--------NILERQKIAHEVSTQVFA 209
GL E++ + ++ R+E + E++ LL S EI ++++ AH ++ V
Sbjct: 179 GLGPEFETIVVNITSRSEAISLQEVHYLLQSHEIRLEQLSVASVIDVPPAAHTITGGVQN 238
Query: 208 TTRNAGSFESSSN 170
+ N G F SSN
Sbjct: 239 SNTNDGQFRGSSN 251
Score = 47.8 bits (112), Expect(2) = 3e-17
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = -2
Query: 669 EYLQWVKQDQTLLIWMTATISESILPYVIGIDSAAELWSVLEKHF 535
EY QWV DQ LL W+ A+I E++ +V+ ++ E+WSVLEK F
Sbjct: 77 EYDQWVILDQFLLSWILASIFEAMYGHVVNCQTSTEVWSVLEKLF 121
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 54.3 bits (129), Expect(3) = 3e-15
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = -1
Query: 478 KGNSSMHDYLQKIKSISDGLAAANIIVTYGDTVQHVLRGLPNEYDPVATSLRVRTEEANF 299
KG+ S+ DY+ K+K ++D +A A + + + +VL GL ++Y+PV +SL ++E +
Sbjct: 136 KGDLSVSDYISKMKVLADEMAFAGKPLDDEELISYVLAGLDDDYEPVVSSLVGKSEVVSL 195
Query: 298 DELYGLLLSEEINILERQKIAHEVSTQVFATTRNAG 191
E Y LLS + R AH+ S+ V A R G
Sbjct: 196 AECYSQLLSFKSRQKLRHAAAHQASS-VNAARRGGG 230
Score = 40.0 bits (92), Expect(3) = 3e-15
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = -2
Query: 684 QTKNPEYLQWVKQDQTLLIWMTATISESILPYVIGIDSAAELWSVLEKHFALATLLMFIN 505
+ P + W+ DQ +L ++ +T+S+ IL VI ++SAA++W + + + + +N
Sbjct: 67 KASKPAFEMWITADQQVLGFLLSTLSKEILTQVISMESAAQVWKAITEMLSSQSRARALN 126
Query: 504 LKI 496
++
Sbjct: 127 TRL 129
Score = 33.9 bits (76), Expect(3) = 3e-15
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 829 QFVPVKLSKEKFLLWKQLFKPILKSNNLVGFVNGSCKCP 713
Q V KL++ FLLWK P+++ + G++ G+ + P
Sbjct: 15 QAVAEKLTRTNFLLWKAQILPVIRGARMEGYLTGATQAP 53
>emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]
Length = 1139
Score = 52.4 bits (124), Expect(3) = 8e-15
Identities = 26/102 (25%), Positives = 59/102 (57%)
Frame = -1
Query: 469 SSMHDYLQKIKSISDGLAAANIIVTYGDTVQHVLRGLPNEYDPVATSLRVRTEEANFDEL 290
+++ +Y+ KIK +D LAA +++ D V ++L GL ++Y+ V T++ +R ++ + + +
Sbjct: 122 NALENYIMKIKGAADNLAAIGELISEQDQVMNLLGGLGSDYNVVVTAINIRDDKISLEAI 181
Query: 289 YGLLLSEEINILERQKIAHEVSTQVFATTRNAGSFESSSNFH 164
+ +LL+ + + LE+Q ++S + + N G + H
Sbjct: 182 HSMLLAFK-HPLEQQSSIEQMSANYASFSNNRGGGRKFNGGH 222
Score = 41.2 bits (95), Expect(3) = 8e-15
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = -2
Query: 675 NPEYLQWVKQDQTLLIWMTATISESILPYVIGIDSAAELWSVLEKH 538
NP ++ W +QD+T+L W+ +++ I+ +IG +++ W+ LE +
Sbjct: 82 NPAFVAWRRQDRTILSWIYLSLTPGIMAQIIGHNTSHSAWNALENY 127
Score = 33.1 bits (74), Expect(3) = 8e-15
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 823 VPVKLSKEKFLLWKQLFKPILKSNNLVGFVNGSCKCPPQFL 701
+PVKL + ++LW+ ++ +N F++G+ CP + L
Sbjct: 36 LPVKLDRTNYILWRSQIDNVVFANGFEDFIDGTSICPEKDL 76
>emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera]
Length = 685
Score = 70.5 bits (171), Expect = 6e-10
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 2/219 (0%)
Frame = -1
Query: 817 VKLSKEKFLLWKQLFKPILKSNNLVGFVNGSCKCPPQFLQ**RSTNKKSRVFTMG*TRSN 638
VKL FL+WKQ +K L FV PP+FL + ++ +
Sbjct: 20 VKLDNNNFLIWKQQVVFAIKGYGLQRFVLFEYAIPPRFL-----LKEYAQAGNVNKAFVE 74
Query: 637 LADMDDCYYLGIYSPLCDRY*FCC*VMECT*KAFCFSNSAHVHQLKDQPQGIKKGNSSMH 458
D + S + ++ A + Q KDQ + +K G+ ++
Sbjct: 75 WEQQDQLLLSWLLSSISEKV----------------LPRAKIGQFKDQLKTMKNGSLNVV 118
Query: 457 DYLQKIKSISDGLAAANIIVTYGDTVQHVLRGLPNEYDPVATSLRVRTEEANFDELYGLL 278
+YL KIKS D LA+ I+T D + +L GL +EYD TS+ R+E +E+ ++
Sbjct: 119 EYLSKIKSCVDYLASLGHILTDKDHIDAILDGLTDEYDAFITSILARSESYTIEEVESMI 178
Query: 277 LSEEINILERQKIAHEVSTQVFA--TTRNAGSFESSSNF 167
+++E I + K + FA +T N SNF
Sbjct: 179 MAQEARIEKNAKSLDSTPSANFASFSTNNGFGGRGRSNF 217