BLASTX nr result
ID: Coptis24_contig00006494
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006494
(1916 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like... 388 0.0
ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like... 376 0.0
ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like... 374 0.0
ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|2... 382 0.0
ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like... 387 0.0
>ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like [Vitis vinifera]
gi|302144037|emb|CBI23142.3| unnamed protein product
[Vitis vinifera]
Length = 509
Score = 388 bits (996), Expect(2) = 0.0
Identities = 190/286 (66%), Positives = 232/286 (81%), Gaps = 1/286 (0%)
Frame = -1
Query: 1877 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVX 1698
MSSTLLEVTR+ HEE+ERLERLIVKDLQ EPASS++RLFQ+HRVRNMID+IT TT KL+
Sbjct: 1 MSSTLLEVTRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLI- 59
Query: 1697 XXXXXXXXXXXXXXXXXXVEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREY 1521
+IYEDKD+ARKDEIAALGGQ+ TNVF AFYDRLKEIREY
Sbjct: 60 -------------------DIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREY 100
Query: 1520 HRRHPSARVIDASEDYDELLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYST 1341
HR+H +ARV+DA+E+Y+ELLK+E +EF GEE +GRY D+HELYNEYINSKFG+ +EYS
Sbjct: 101 HRKHQAARVVDANEEYEELLKEELRIEFRGEEAFGRYLDLHELYNEYINSKFGEHIEYSA 160
Query: 1340 YLDIFSQTHEIPRNLKLTGAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELW 1161
Y+++FS+ +IPR LKLT Y++YLE+LLEYLI+FF+R EPLQDLDR F+K+ ++FEE W
Sbjct: 161 YVEVFSEPQKIPRKLKLTRQYREYLENLLEYLIYFFERTEPLQDLDRIFTKLATDFEEQW 220
Query: 1160 ANGNVEGWENKGLENGHISSHEALIDLDYYSTMEELMEVGPGKLKE 1023
ANG VEGWEN+ ENG++ + A IDLDYYST+EE+MEVGP LKE
Sbjct: 221 ANGMVEGWENESQENGNVPTQHAAIDLDYYSTVEEVMEVGPEMLKE 266
Score = 358 bits (919), Expect(2) = 0.0
Identities = 174/244 (71%), Positives = 194/244 (79%)
Frame = -2
Query: 967 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 788
AL+ALGLK+GGTV++RAERLFLTKHTPLEQLD+KHF KGS +QNGT A + K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEQLDQKHFAKGSRRSEQNGTPAAPKEADSSKE 326
Query: 787 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXQQI 608
IAL EAKL+++CE LL E IV+TKEN+EKKQALT+ QQI
Sbjct: 327 IALLEAKLRKICE-LLYETIVRTKENIEKKQALTYEEMEAEREEEEVQADTESDDEEQQI 385
Query: 607 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 428
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 445
Query: 427 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXEGNIYNKKTYTDLQR 248
LGIPNTKNFNE+TSI+EA+ LW +IQ+RQG+NKWRP EGNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIKEAKVLWERIQERQGLNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 247 QGLL 236
QGL+
Sbjct: 506 QGLI 509
>ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
Length = 509
Score = 376 bits (965), Expect(2) = 0.0
Identities = 185/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Frame = -1
Query: 1877 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVX 1698
MSST+LEVTR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+
Sbjct: 1 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIG 60
Query: 1697 XXXXXXXXXXXXXXXXXXVEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREY 1521
IYED D+ARKDEIAALGGQ+ NVF AFYDRLKEIREY
Sbjct: 61 --------------------IYEDSDNARKDEIAALGGQTATGINVFSAFYDRLKEIREY 100
Query: 1520 HRRHPSARVIDASEDYDELLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYST 1341
HR+HP ARV+DA++DY+ LL +E +EFSGEE GRY D+HELY +Y+NSKFG+ +EYS
Sbjct: 101 HRKHPVARVVDANDDYETLLNEELQIEFSGEEALGRYLDLHELYYQYVNSKFGEPIEYSA 160
Query: 1340 YLDIFSQTHEIPRNLKLTGAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELW 1161
YLD+FS T +IPR +K+T Y++YL +LLEYL++FFQR EPLQDLDR SKV +EFEE W
Sbjct: 161 YLDVFSDTDKIPRKMKMTRQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESW 220
Query: 1160 ANGNVEGWENKGLENGHISSHEALIDLDYYSTMEELMEVGPGKLKE 1023
A G V+GWEN ENGH+ + A IDLDYYST+EELMEVGP +LKE
Sbjct: 221 AVGKVQGWENDNQENGHVLAEHATIDLDYYSTVEELMEVGPERLKE 266
Score = 369 bits (946), Expect(2) = 0.0
Identities = 178/244 (72%), Positives = 199/244 (81%)
Frame = -2
Query: 967 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 788
AL+ALGLK+GGTV++RAERLFLTKHTPLE+LDKKHF KG+ GV++NG AAVS+ G+ K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGARGVEKNGVAAVSQEDGNSKE 326
Query: 787 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXQQI 608
IAL EAK+ +LC DLL E I +TK+NV KKQALT+ +QI
Sbjct: 327 IALMEAKMTKLC-DLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDEEEQI 385
Query: 607 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 428
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 427 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXEGNIYNKKTYTDLQR 248
LGIPNTKNFNE+TSIEEA+ELW+KIQQRQGVNKWRP EGNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 247 QGLL 236
QGL+
Sbjct: 506 QGLI 509
>ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
Length = 509
Score = 374 bits (960), Expect(2) = 0.0
Identities = 183/286 (63%), Positives = 224/286 (78%), Gaps = 1/286 (0%)
Frame = -1
Query: 1877 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVX 1698
MSST+LEVTR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+
Sbjct: 1 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIG 60
Query: 1697 XXXXXXXXXXXXXXXXXXVEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREY 1521
+YED D+ARKDEIAALGGQ+ NVF AFYDRLKEIREY
Sbjct: 61 --------------------VYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREY 100
Query: 1520 HRRHPSARVIDASEDYDELLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYST 1341
HR+HP ARV+DA++DY+ LL +EP +EFSGEE GRY D+HELY +Y+NSKFG+ +EYS
Sbjct: 101 HRKHPVARVVDANDDYETLLNEEPQIEFSGEESLGRYLDLHELYYQYVNSKFGEPIEYSA 160
Query: 1340 YLDIFSQTHEIPRNLKLTGAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELW 1161
YLD+FS T +IPR +K+T Y++YL +LLEYL++FFQR EPLQDLDR SKV +EFEE W
Sbjct: 161 YLDVFSDTDKIPRKMKMTRQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESW 220
Query: 1160 ANGNVEGWENKGLENGHISSHEALIDLDYYSTMEELMEVGPGKLKE 1023
G V+ WEN ENGH+ + A IDLDYYST+EELMEVGP +LKE
Sbjct: 221 VVGKVQRWENDNQENGHVLAEHAPIDLDYYSTIEELMEVGPERLKE 266
Score = 368 bits (944), Expect(2) = 0.0
Identities = 177/244 (72%), Positives = 198/244 (81%)
Frame = -2
Query: 967 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 788
AL+ALGLK+GGTV++RAERLFLTKHTPLE+LD+KHF KG+CGV++NG AAV + G+ K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGACGVEKNGVAAVPQEDGNSKE 326
Query: 787 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXQQI 608
IAL EAK+ +LC LL E I +TK+NV KKQALT+ QQI
Sbjct: 327 IALMEAKMTKLCH-LLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDSESEDEEQQI 385
Query: 607 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 428
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 427 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXEGNIYNKKTYTDLQR 248
LGIPNTKNFNE+TSIEEA+ELW+KIQQRQGVNKWRP EGNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 247 QGLL 236
QGL+
Sbjct: 506 QGLI 509
>ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|222858447|gb|EEE95994.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 382 bits (981), Expect(2) = 0.0
Identities = 187/286 (65%), Positives = 228/286 (79%), Gaps = 1/286 (0%)
Frame = -1
Query: 1877 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVX 1698
MSS LLEVTR+SHEEVERLERLIVKDLQ EPA++++RLFQ+HRVRNMID+I +TT KLV
Sbjct: 1 MSSNLLEVTRASHEEVERLERLIVKDLQNEPANNKDRLFQSHRVRNMIDNIITTTEKLV- 59
Query: 1697 XXXXXXXXXXXXXXXXXXVEIYEDKDSARKDEIAALGGQSG-NTNVFGAFYDRLKEIREY 1521
E+YEDKD+AR+DEIAALGGQ+ TNVF AFYDRLKEIREY
Sbjct: 60 -------------------EVYEDKDNARRDEIAALGGQTAMGTNVFSAFYDRLKEIREY 100
Query: 1520 HRRHPSARVIDASEDYDELLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYST 1341
HRRHP+ARV+DA+EDY+ +LK+EP++EF+GEE +G+Y DMHELYN+Y N KF K +EYST
Sbjct: 101 HRRHPAARVVDANEDYEAMLKEEPVIEFTGEEAFGKYLDMHELYNQYNNLKFEKPIEYST 160
Query: 1340 YLDIFSQTHEIPRNLKLTGAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELW 1161
YLDIFSQ + +P LK + Y++Y+E+LLEYL++FFQR EPLQDLDR FSKV +EFEE W
Sbjct: 161 YLDIFSQPNIVPHKLKFSRRYREYMENLLEYLVYFFQRTEPLQDLDRIFSKVTTEFEEQW 220
Query: 1160 ANGNVEGWENKGLENGHISSHEALIDLDYYSTMEELMEVGPGKLKE 1023
N V+GWE ENGH+S+ +IDLD+YST+EEL EVGP KLKE
Sbjct: 221 ENDAVQGWEKTSQENGHLSADHTVIDLDFYSTVEELKEVGPEKLKE 266
Score = 358 bits (920), Expect(2) = 0.0
Identities = 176/244 (72%), Positives = 196/244 (80%)
Frame = -2
Query: 967 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 788
AL+ALGLKSGGTV++RAERLFLTK TPLE+LDKKHF+KGS G + NG AA S+ + K
Sbjct: 267 ALAALGLKSGGTVQQRAERLFLTKDTPLEKLDKKHFVKGSRGSEPNGGAATSKEVDNSKE 326
Query: 787 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXQQI 608
IAL EAK+ +LC DLL+E IV+TKENV KKQALT+ QQI
Sbjct: 327 IALMEAKINKLC-DLLDETIVRTKENVVKKQALTYDEMEAEREEEETQADTESDDDEQQI 385
Query: 607 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 428
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 427 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXEGNIYNKKTYTDLQR 248
LGIPNTKNFNE+TSI+EAQELW+ IQ+RQGVNKWRP EGNIYN+KTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIKEAQELWKGIQERQGVNKWRPDLEEEYEDKEGNIYNRKTYTDLQR 505
Query: 247 QGLL 236
QGL+
Sbjct: 506 QGLI 509
>ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like [Cucumis sativus]
gi|449507630|ref|XP_004163087.1| PREDICTED: LOW QUALITY
PROTEIN: splicing factor 3A subunit 3-like [Cucumis
sativus]
Length = 508
Score = 387 bits (994), Expect(2) = 0.0
Identities = 196/286 (68%), Positives = 229/286 (80%), Gaps = 1/286 (0%)
Frame = -1
Query: 1877 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVX 1698
MSSTLLEVTRSSHEEVERLERLIVK+LQ EPAS ++RL Q+HRVR+MID+I STT KLV
Sbjct: 1 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLV- 59
Query: 1697 XXXXXXXXXXXXXXXXXXVEIYEDKDSARKDEIAALGGQS-GNTNVFGAFYDRLKEIREY 1521
EIYEDKDSARKDEIAALGGQ+ TNVF AFYDRLKEIREY
Sbjct: 60 -------------------EIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREY 100
Query: 1520 HRRHPSARVIDASEDYDELLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYST 1341
HRRHP+ARV+D SED D LLK+EP +EFSGEE +GRY D+HELYN+YINSKFG+ +EYS+
Sbjct: 101 HRRHPAARVVDVSED-DGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSS 159
Query: 1340 YLDIFSQTHEIPRNLKLTGAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELW 1161
YLD+FSQ +I + LK + Y++YLE+LL YLI+FFQR EPLQDLDR FSKVESEFEE W
Sbjct: 160 YLDVFSQPQKISQKLKFSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW 219
Query: 1160 ANGNVEGWENKGLENGHISSHEALIDLDYYSTMEELMEVGPGKLKE 1023
G +EGWEN +NGH S+ +LIDLDYYST+EEL+E+GP +LKE
Sbjct: 220 VIGTIEGWENTSQDNGHDSAQHSLIDLDYYSTVEELVELGPERLKE 265
Score = 350 bits (897), Expect(2) = 0.0
Identities = 169/243 (69%), Positives = 193/243 (79%)
Frame = -2
Query: 964 LSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKNI 785
L ALGLK+GGTV++RAERLFLTKHTPL+ LDKKHF K S QNG+A S+ +LK +
Sbjct: 267 LMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPIQNGSAVASQNNENLKQV 326
Query: 784 ALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXQQIY 605
AL EAK+++LC DLL+E I +TK+N+ KKQALT+ QQIY
Sbjct: 327 ALMEAKIEKLC-DLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIY 385
Query: 604 NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCL 425
NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRCL
Sbjct: 386 NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCL 445
Query: 424 GIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXEGNIYNKKTYTDLQRQ 245
GIPNTKNFNE+TSIEEA++LW++IQ+RQGVNKWRP EGNIYNKKTYTDLQRQ
Sbjct: 446 GIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQ 505
Query: 244 GLL 236
GL+
Sbjct: 506 GLI 508