BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006457
         (2993 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   692   0.0  
ref|XP_002329325.1| predicted protein [Populus trichocarpa] gi|2...   675   0.0  
ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinu...   670   0.0  
ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ...   661   0.0  
ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ...   660   0.0  

>ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
            gi|296087299|emb|CBI33673.3| unnamed protein product
            [Vitis vinifera]
          Length = 395

 Score =  692 bits (1785), Expect = 0.0
 Identities = 329/393 (83%), Positives = 350/393 (89%), Gaps = 1/393 (0%)
 Frame = -3

Query: 2907 MANLNPIILAWGSGEDGQLGIGDNEDKEWVCSIKALESQKISAVVGGSRNSLAICEDGKL 2728
            MA+    I++WGSGEDGQLGIG+NE+KEWVC++KAL +Q + +VV GSRNSLAICEDGKL
Sbjct: 1    MASKPKAIISWGSGEDGQLGIGNNEEKEWVCAVKALAAQNVCSVVAGSRNSLAICEDGKL 60

Query: 2727 FTWGWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDKGQAYAWGGNE 2548
            FTWGWNQRGTLGHPPETKTENIPSQVKALAN KIVQAAIGGWHCLAVDD+G+AYAWGGNE
Sbjct: 61   FTWGWNQRGTLGHPPETKTENIPSQVKALANAKIVQAAIGGWHCLAVDDQGRAYAWGGNE 120

Query: 2547 YGQCGEEPERKXXXXXXXXXDIVIPQRCAPKLSVRQVAAGGTHSVVLTNEGHLWTWGQPW 2368
            YGQCGEEPERK         DI IPQRCA KLSVRQVAAGGTHSVVLT EGH+WTWGQPW
Sbjct: 121  YGQCGEEPERKDDTGRPLRRDITIPQRCASKLSVRQVAAGGTHSVVLTREGHVWTWGQPW 180

Query: 2367 PPGDIKQISTPVRVQGLEKVKLIAVGAFHNLALLEDGMLWAWGNNEYGQLGTGDTQPRSQ 2188
            PPGDIKQISTPVRVQGLEKV+LIAVGAFHNLALLEDG+LWAWGNNEYGQLGTGDTQPRSQ
Sbjct: 181  PPGDIKQISTPVRVQGLEKVRLIAVGAFHNLALLEDGILWAWGNNEYGQLGTGDTQPRSQ 240

Query: 2187 PIPVQGLSGLALVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGDDKSSKMVPQRVQLL 2008
            PI VQGLS L LVDIAAGGWHSTALTD+G VYGWGRGEHGRLGFGDDKSSKMVPQ+VQLL
Sbjct: 241  PIAVQGLSDLTLVDIAAGGWHSTALTDDGGVYGWGRGEHGRLGFGDDKSSKMVPQKVQLL 300

Query: 2007 VGEDIVQVSCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKGTTGHPTEVLINIPQPRNLS 1828
            V E+IVQ+SCGGTHSVALTRDGRMFSFGRGDHGRLGYGRK TTGHP EV IN+P   NLS
Sbjct: 301  VEENIVQISCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKVTTGHPMEVPINLPPATNLS 360

Query: 1827 NIGT-GQWCAKLVACGGRHTLAIATWQTEELEQ 1732
              G  G WC+KLVACGGRHTLAI  W   E EQ
Sbjct: 361  GSGAGGHWCSKLVACGGRHTLAIVEWLAHEPEQ 393


>ref|XP_002329325.1| predicted protein [Populus trichocarpa] gi|222870779|gb|EEF07910.1|
            predicted protein [Populus trichocarpa]
          Length = 392

 Score =  675 bits (1742), Expect = 0.0
 Identities = 322/382 (84%), Positives = 344/382 (90%), Gaps = 2/382 (0%)
 Frame = -3

Query: 2886 ILAWGSGEDGQLGIGDNEDKEWVCSIKALESQKISAVVGGSRNSLAICEDGKLFTWGWNQ 2707
            ++AWGSGEDGQLGIG+NE+KEWVC +KALE  K+ +VV GSRNSLAIC+DGKLFTWGWNQ
Sbjct: 7    VIAWGSGEDGQLGIGNNEEKEWVCIVKALEPYKVRSVVAGSRNSLAICDDGKLFTWGWNQ 66

Query: 2706 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDKGQAYAWGGNEYGQCGEE 2527
            RGTLGHPPETKTENIPSQVKALANV IVQAAIGGWHCLAVDD+G+AYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPPETKTENIPSQVKALANVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 2526 PERKXXXXXXXXXDIVIPQRCAPKLSVRQVAAGGTHSVVLTNEGHLWTWGQPWPPGDIKQ 2347
            PERK         DIVIPQRCA KL VRQVAAGGTHSVVLT EGH+W+WGQPWPPGDIKQ
Sbjct: 127  PERKDDTGRPLRRDIVIPQRCASKLVVRQVAAGGTHSVVLTREGHVWSWGQPWPPGDIKQ 186

Query: 2346 ISTPVRVQGLEKVKLIAVGAFHNLALLEDGMLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 2167
            IS PVRVQGLE+V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPI VQGL
Sbjct: 187  ISVPVRVQGLERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPITVQGL 246

Query: 2166 SGLALVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDIV 1990
            SGL LVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGD DKSSKMVPQRV LLVGEDIV
Sbjct: 247  SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLLVGEDIV 306

Query: 1989 QVSCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKGTTGHPTEVLINIPQPRNLSNIG-TG 1813
            QVSCGGTHSVALTRDGRM++FGRGDHGRLGYGRK TTG P EV I+IP P+NL++ G  G
Sbjct: 307  QVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPKNLTDSGDAG 366

Query: 1812 QWCAKLVACGGRHTLAIATWQT 1747
            +W AKLVA GGRHTLAI  W T
Sbjct: 367  RWIAKLVASGGRHTLAIVEWHT 388


>ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinus communis]
            gi|223544118|gb|EEF45643.1| Ran GTPase binding protein,
            putative [Ricinus communis]
          Length = 393

 Score =  670 bits (1728), Expect = 0.0
 Identities = 319/385 (82%), Positives = 340/385 (88%), Gaps = 3/385 (0%)
 Frame = -3

Query: 2886 ILAWGSGEDGQLGIGDNEDKEWVCSIKALESQKISAVVGGSRNSLAICEDGKLFTWGWNQ 2707
            ++AWG+GEDGQLGIG NE+KEWVC + ALE  K+ +VV GSRNSLAIC+DGKLFTWGWNQ
Sbjct: 7    LIAWGAGEDGQLGIGINEEKEWVCVVNALEPYKVRSVVAGSRNSLAICDDGKLFTWGWNQ 66

Query: 2706 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDKGQAYAWGGNEYGQCGEE 2527
            RGTLGHP ETKTENIPSQVKAL NV IVQAAIGGWHCLAVDD+G+AYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPAETKTENIPSQVKALNNVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 2526 PERKXXXXXXXXXDIVIPQRCAPKLSVRQVAAGGTHSVVLTNEGHLWTWGQPWPPGDIKQ 2347
            PERK         DIVIPQRCAPKL VRQVAAGGTHSVVLT EGH+WTWGQPWPPGDIKQ
Sbjct: 127  PERKDDTGKTLRRDIVIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 186

Query: 2346 ISTPVRVQGLEKVKLIAVGAFHNLALLEDGMLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 2167
            IS PVRVQGLEKVKLIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPIPVQGL
Sbjct: 187  ISVPVRVQGLEKVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 246

Query: 2166 SGLALVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDIV 1990
            SGL LVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGD DKSSKMVPQ+V LL GEDIV
Sbjct: 247  SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 306

Query: 1989 QVSCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKGTTGHPTEVLINIPQPRNLSNI--GT 1816
            Q+SCGGTHSVALT+DGRMFSFGRGDHGRLGYG+K TTG P EV  +IP P++LS      
Sbjct: 307  QLSCGGTHSVALTQDGRMFSFGRGDHGRLGYGKKVTTGQPVEVPTDIPPPKSLSGTEEAE 366

Query: 1815 GQWCAKLVACGGRHTLAIATWQTEE 1741
            G W AKLVACGGRHTLAI  W+ +E
Sbjct: 367  GHWIAKLVACGGRHTLAIVEWKVDE 391


>ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1-like [Cucumis sativus]
          Length = 390

 Score =  661 bits (1706), Expect = 0.0
 Identities = 313/383 (81%), Positives = 340/383 (88%), Gaps = 1/383 (0%)
 Frame = -3

Query: 2886 ILAWGSGEDGQLGIGDNEDKEWVCSIKALESQKISAVVGGSRNSLAICEDGKLFTWGWNQ 2707
            I+AWGSGEDGQLG+G+NE++EWVC+IKALESQ + +VV GSRNSLAI EDGKLFTWGWNQ
Sbjct: 7    IIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLFTWGWNQ 66

Query: 2706 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDKGQAYAWGGNEYGQCGEE 2527
            RGTLGHP  TK+EN+PSQVKAL+NVKIVQAAIGGWHCLAVDD+G+AYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 2526 PERKXXXXXXXXXDIVIPQRCAPKLSVRQVAAGGTHSVVLTNEGHLWTWGQPWPPGDIKQ 2347
            PE+K         DI IPQRCAPKL VRQVAAGGTHSVVLT EGH+WTWGQPWPPGDI Q
Sbjct: 127  PEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDITQ 186

Query: 2346 ISTPVRVQGLEKVKLIAVGAFHNLALLEDGMLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 2167
            IS PVRVQGL+ V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPIPVQGL
Sbjct: 187  ISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 246

Query: 2166 SGLALVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDIV 1990
            SGL LVDIAAGGWHSTALTD GEVYGWGRGEHGRLGFGD DKSSKMVPQ+VQLL GE+IV
Sbjct: 247  SGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEIV 306

Query: 1989 QVSCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKGTTGHPTEVLINIPQPRNLSNIGTGQ 1810
            Q+SCGGTHSVA+T DGRMFSFGRGDHGRLGYGRK TTG P EV I+IP PR  +    G 
Sbjct: 307  QISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPRGRTE--NGH 364

Query: 1809 WCAKLVACGGRHTLAIATWQTEE 1741
            W AKLVACGGRHTLA+  W++E+
Sbjct: 365  WIAKLVACGGRHTLALVQWKSED 387


>ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1-like [Cucumis sativus]
          Length = 390

 Score =  660 bits (1704), Expect = 0.0
 Identities = 313/383 (81%), Positives = 339/383 (88%), Gaps = 1/383 (0%)
 Frame = -3

Query: 2886 ILAWGSGEDGQLGIGDNEDKEWVCSIKALESQKISAVVGGSRNSLAICEDGKLFTWGWNQ 2707
            I+AWGSGEDGQLG+G+NE++EWVC+IKALESQ + +VV GSRNSLAI EDGKLFTWGWNQ
Sbjct: 7    IIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLFTWGWNQ 66

Query: 2706 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDKGQAYAWGGNEYGQCGEE 2527
            RGTLGHP  TK+EN+PSQVKAL+NVKIVQAAIGGWHCLAVDD+G+AYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 2526 PERKXXXXXXXXXDIVIPQRCAPKLSVRQVAAGGTHSVVLTNEGHLWTWGQPWPPGDIKQ 2347
            PE+K         DI IPQRCAPKL VRQVAAGGTHSVVLT EGH+WTWGQPWPPGDI Q
Sbjct: 127  PEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDITQ 186

Query: 2346 ISTPVRVQGLEKVKLIAVGAFHNLALLEDGMLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 2167
            IS PVRVQGL+ V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPIPVQGL
Sbjct: 187  ISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQGL 246

Query: 2166 SGLALVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDIV 1990
            SGL LVDIAAGGWHSTALTD GEVYGWGRGEHGRLGFGD DKSSKMVPQ+VQLL GE+IV
Sbjct: 247  SGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEIV 306

Query: 1989 QVSCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKGTTGHPTEVLINIPQPRNLSNIGTGQ 1810
            Q+SCGGTHSVA+T DGRMFSFGRGDHGRLGYGRK TTG P EV I+IP PR  +    G 
Sbjct: 307  QISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPRGRTE--NGH 364

Query: 1809 WCAKLVACGGRHTLAIATWQTEE 1741
            W AKLVACGGRHTLA+  W+ E+
Sbjct: 365  WIAKLVACGGRHTLALVQWKPED 387