BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006453
         (713 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [...   335   7e-90
ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ...   330   2e-88
ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ...   327   1e-87
ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|1...   327   1e-87
ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-l...   325   7e-87

>ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
           gi|147867252|emb|CAN81194.1| hypothetical protein
           VITISV_022853 [Vitis vinifera]
           gi|297745390|emb|CBI40470.3| unnamed protein product
           [Vitis vinifera]
          Length = 241

 Score =  335 bits (858), Expect = 7e-90
 Identities = 166/184 (90%), Positives = 179/184 (97%)
 Frame = +2

Query: 2   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 181
           NRSQQ+SD+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THLMPRSQ
Sbjct: 57  NRSQQISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116

Query: 182 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSA 361
           IDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDLNY+EDSA
Sbjct: 117 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSA 176

Query: 362 GGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLE 541
           GGPDVTVG+L KL+KVTLLQMDAKLPM+ FE VMQLA+EGCKA+ANYIREVLLENTKQLE
Sbjct: 177 GGPDVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLE 236

Query: 542 FRCG 553
           +R G
Sbjct: 237 YRRG 240


>ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
           gi|223529966|gb|EEF31893.1| Exosome complex exonuclease
           RRP41, putative [Ricinus communis]
          Length = 241

 Score =  330 bits (846), Expect = 2e-88
 Identities = 162/185 (87%), Positives = 179/185 (96%)
 Frame = +2

Query: 2   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 181
           NRSQQ+ D+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 57  NRSQQIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116

Query: 182 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSA 361
           IDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDLNY+EDSA
Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSA 176

Query: 362 GGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLE 541
           GGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+EGCKA+ANYIRE+LLENTKQLE
Sbjct: 177 GGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLE 236

Query: 542 FRCGV 556
           +R G+
Sbjct: 237 YRRGL 241


>ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
           gi|355501548|gb|AES82751.1| Exosome complex exonuclease
           RRP41 [Medicago truncatula]
          Length = 241

 Score =  327 bits (838), Expect = 1e-87
 Identities = 162/184 (88%), Positives = 175/184 (95%)
 Frame = +2

Query: 2   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 181
           NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 57  NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116

Query: 182 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSA 361
           IDI+VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAG+LNSTPLLDLNY+EDSA
Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSA 176

Query: 362 GGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLE 541
           GGPDVTVG+L KL+KVTLLQMD+KLP++  E VMQLA EGCKA+ANYIRE+LLENTKQLE
Sbjct: 177 GGPDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLENTKQLE 236

Query: 542 FRCG 553
           +R G
Sbjct: 237 YRRG 240


>ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|222861618|gb|EEE99160.1| predicted protein [Populus
           trichocarpa]
          Length = 241

 Score =  327 bits (838), Expect = 1e-87
 Identities = 162/185 (87%), Positives = 178/185 (96%)
 Frame = +2

Query: 2   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 181
           NRSQQ++D+ALVRCEYSMANFSTGDR RKPKGDRRS EISLVIRQ ME CI+T+LMPRSQ
Sbjct: 57  NRSQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQ 116

Query: 182 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSA 361
           IDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGFLNSTPLLDLNY+EDSA
Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSA 176

Query: 362 GGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLE 541
           GGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+EGCKA+ANYIREVLLENTKQLE
Sbjct: 177 GGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREVLLENTKQLE 236

Query: 542 FRCGV 556
           +R G+
Sbjct: 237 YRRGL 241


>ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
          Length = 241

 Score =  325 bits (832), Expect = 7e-87
 Identities = 160/185 (86%), Positives = 177/185 (95%)
 Frame = +2

Query: 2   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 181
           NR+QQ+S  ALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THL+PRSQ
Sbjct: 57  NRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQ 116

Query: 182 IDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDLNYIEDSA 361
           IDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDLNY+EDSA
Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSA 176

Query: 362 GGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAMEGCKAVANYIREVLLENTKQLE 541
           GGPDVT+G+L KL+KVTLLQMD+KLP++  E VMQLA+EGCKA+ANYIREVLLENTKQLE
Sbjct: 177 GGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLE 236

Query: 542 FRCGV 556
           +R GV
Sbjct: 237 YRRGV 241