BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006326
         (1637 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298365.1| inner membrane protein [Populus trichocarpa]...   592   e-167
ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast pr...   586   e-165
ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chl...   582   e-163
ref|XP_002313443.1| inner membrane protein [Populus trichocarpa]...   570   e-160
gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]                  567   e-159

>ref|XP_002298365.1| inner membrane protein [Populus trichocarpa]
            gi|222845623|gb|EEE83170.1| inner membrane protein
            [Populus trichocarpa]
          Length = 451

 Score =  592 bits (1527), Expect = e-167
 Identities = 319/460 (69%), Positives = 355/460 (77%), Gaps = 7/460 (1%)
 Frame = +2

Query: 98   MAKTVLSSSPFLNSPQFPLLPRHGQSKYSILTTPKRLSHNGTRVRMSFNGLPTPPIQSF- 274
            MA+T+LSS PF+ +P  P L RH       LTT +R     TR+++S +    PPI    
Sbjct: 1    MARTLLSSPPFIGTP-LPSLSRHA------LTTNRRFI--STRIKLSLHD-NIPPIHHHL 50

Query: 275  -ESIDFEGMVRRAECLLYTLADAAVV--TADSTGSGSDGVAAQKGGGWFGFISDAMEVVL 445
              S+DF  ++ RAE  LYTLADAAV   +A ST S     AAQK GGWFGFISD ME VL
Sbjct: 51   HSSVDFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAAQKNGGWFGFISDGMEFVL 110

Query: 446  KVLKDGLSTVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTMAMQNLQPKIKAIQERYA 625
            KVLKDGLS+VHVPYAYGFAIILLT+ VKVATLPLTK+QVEST+AMQNLQPKIKAIQ+RYA
Sbjct: 111  KVLKDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYA 170

Query: 626  GNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPS 805
            GNQERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPS
Sbjct: 171  GNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPS 230

Query: 806  LGGPTTIAARQSGAGVSWLFPFVDGHPPLGWHDTXXXXXXXXXXXXSQYVSMEIMKPPQT 985
            LGGPTTIAARQSG+G+SWLFPFVDGHPPLGWHDT            SQYVSMEIMKPPQT
Sbjct: 231  LGGPTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQT 290

Query: 986  NDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPTVSE 1165
            +DP QKNTLL+FKFLP+MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKP V+E
Sbjct: 291  DDPTQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNE 350

Query: 1166 NASGIISAGRAKRSTSQPVLPRSTSQPGQPGERFKQLXXXXXXXXXXYNKALPENDI--I 1339
            NASGII+AGRAK         RS SQPGQPG+RFKQL            KALP   +  +
Sbjct: 351  NASGIITAGRAK---------RSASQPGQPGDRFKQL--KEQDKSKTLRKALPTEGVQAL 399

Query: 1340 TSLSDTDEDSDGEINAK-DDTREEAYASGVNKQIPDYSEP 1456
             S S +DEDSD E N K ++  EE YAS  +K++PD S P
Sbjct: 400  DSASGSDEDSDEETNDKGEEVLEETYASSASKRVPDISRP 439


>ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative
            [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner
            membrane protein PPF-1, chloroplast precursor, putative
            [Ricinus communis]
          Length = 449

 Score =  586 bits (1511), Expect = e-165
 Identities = 314/456 (68%), Positives = 357/456 (78%), Gaps = 3/456 (0%)
 Frame = +2

Query: 98   MAKTVLSSSPFLNSPQFPLLPRHGQSKYSILTTPKRLSHNGTRVRMSFNGLPTPPIQSFE 277
            MAKT++SS  F+ +P      RHG  ++S+L  P R   + T+V+ S + +P  PI   +
Sbjct: 1    MAKTLISSPSFIGAPLPSSSSRHGL-QHSLL--PSRRFISTTKVKFSLHEIP--PITHLD 55

Query: 278  SIDFEGMVRRAECLLYTLADAAVVTADSTGSGSDGVAAQKGGGWFGFISDAMEVVLKVLK 457
            S+DF  +V RAE LLYTLADAAV    S  + +   A QK  GWFGFIS+ ME VLKVLK
Sbjct: 56   SVDFNSIVSRAESLLYTLADAAVAVDSSAATDT---AVQKNNGWFGFISEGMEFVLKVLK 112

Query: 458  DGLSTVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTMAMQNLQPKIKAIQERYAGNQE 637
            DGLS+VHVPY+YGFAIILLTVIVK+ATLPLTKQQVEST+AMQNLQPKIKAIQ+RYAGNQE
Sbjct: 113  DGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQE 172

Query: 638  RIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGP 817
            RIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGP
Sbjct: 173  RIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGP 232

Query: 818  TTIAARQSGAGVSWLFPFVDGHPPLGWHDTXXXXXXXXXXXXSQYVSMEIMKPPQTNDPA 997
            TTIAARQSG+G+SWLFPFVDGHPPLGW+DT            SQYVSMEIMKPPQT+DPA
Sbjct: 233  TTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDPA 292

Query: 998  QKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPTVSENASG 1177
            QKNTLL+FKFLPLMIGYFSLSVPSGLSIYWF NNVLSTAQQVWLRKLGGAKP V +NASG
Sbjct: 293  QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNVLSTAQQVWLRKLGGAKPVVDQNASG 352

Query: 1178 IISAGRAKRSTSQPVLPRSTSQPGQPGERFKQLXXXXXXXXXXYNKALPEND--IITSLS 1351
            II+AGRAKRS SQP       Q G  G+RF+QL            KALP+++   + S S
Sbjct: 353  IITAGRAKRSASQP-------QRG--GDRFRQL--KEEEKRKKLGKALPDDEAQALDSAS 401

Query: 1352 DTDEDSDGEINAK-DDTREEAYASGVNKQIPDYSEP 1456
            D+DE+SD E  AK ++  EEAYAS  +KQ+PD S P
Sbjct: 402  DSDEESDEETKAKGEEVLEEAYASSSSKQVPDISRP 437


>ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1
            [Vitis vinifera]
          Length = 455

 Score =  582 bits (1499), Expect = e-163
 Identities = 315/461 (68%), Positives = 351/461 (76%), Gaps = 8/461 (1%)
 Frame = +2

Query: 98   MAKTVLSSSPFLNSPQFPLLPRHGQSKYSILTTPKRLSHNGTRVRMSFNGLPTPPIQSFE 277
            MA+T++SS PF+  P   L  RHG     +L +        TRV+ S + LP  PI S +
Sbjct: 1    MARTLISSPPFIGKPLPSLSSRHG-----LLHSLPHRRLISTRVKFSLHDLP--PIHSLD 53

Query: 278  S--IDFEGMVRRAECLLYTLADAAVVT---ADSTGSGSDGVAAQKGGGWFGFISDAMEVV 442
            S  IDF G+V RAE LLYTLADAAV     A    SG+   A QK GGWFGFIS+ MEVV
Sbjct: 54   SSSIDFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVV 113

Query: 443  LKVLKDGLSTVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTMAMQNLQPKIKAIQERY 622
            LKVL+DGL+ VHVPYAYGFAIILLTVIVK+AT PLTK+QVEST+AMQNLQPKIKAIQERY
Sbjct: 114  LKVLEDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERY 173

Query: 623  AGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP 802
             GNQERIQLETSRLYKQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIP
Sbjct: 174  KGNQERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP 233

Query: 803  SLGGPTTIAARQSGAGVSWLFPFVDGHPPLGWHDTXXXXXXXXXXXXSQYVSMEIMKPPQ 982
            SLGGPTTIAARQSG+G+SWL PFVDGHPPLGW DT            SQYVSME+MKPPQ
Sbjct: 234  SLGGPTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQ 293

Query: 983  TNDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPTVS 1162
            T+DP+QKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKP V+
Sbjct: 294  TDDPSQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVN 353

Query: 1163 ENASGIISAGRAKRSTSQPVLPRSTSQPGQPGERFKQLXXXXXXXXXXYNKALPENDI-- 1336
            E+ASGII+AGRAK         RS SQP + G+RF+QL           +KALP  +I  
Sbjct: 354  EDASGIITAGRAK---------RSASQPARAGDRFRQL--KEEEKKKKISKALPAEEIQA 402

Query: 1337 ITSLSDTDEDSDGEINAK-DDTREEAYASGVNKQIPDYSEP 1456
            + S SD+DE SD E   K DD  EEAY S  +KQ+P Y+ P
Sbjct: 403  LASESDSDEGSDEETKDKGDDVLEEAYVSSGSKQVPQYAGP 443


>ref|XP_002313443.1| inner membrane protein [Populus trichocarpa]
            gi|222849851|gb|EEE87398.1| inner membrane protein
            [Populus trichocarpa]
          Length = 446

 Score =  570 bits (1469), Expect = e-160
 Identities = 311/457 (68%), Positives = 347/457 (75%), Gaps = 4/457 (0%)
 Frame = +2

Query: 98   MAKTVLSSSPFLNSPQFPLLPRHGQSKYSILTTPKRLSHNGTRVRMSFNGLPTPPIQSF- 274
            MA+T+LSS PF+ +   P L RH       LTT +R     TR+++S +    PPI    
Sbjct: 1    MARTLLSSPPFI-ATSLPSLSRH------TLTTNRRFI--STRIKLSLHD-NIPPIHHHL 50

Query: 275  -ESIDFEGMVRRAECLLYTLADAAVVTADSTGSGSDGVAAQKGGGWFGFISDAMEVVLKV 451
              SIDF  ++ RAE  LYTLADAAV   DS  S +    AQK GGWFGFISD ME VLKV
Sbjct: 51   DSSIDFNSIISRAEGFLYTLADAAVAV-DSAASTTSTDTAQKSGGWFGFISDGMEFVLKV 109

Query: 452  LKDGLSTVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTMAMQNLQPKIKAIQERYAGN 631
            LKDGLS VHVPYAYGFAIILLTV VKVATLPLTK+QVEST+AMQNLQPKIKAIQ+RYAGN
Sbjct: 110  LKDGLSAVHVPYAYGFAIILLTVFVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 169

Query: 632  QERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 811
            QERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSLG
Sbjct: 170  QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLG 229

Query: 812  GPTTIAARQSGAGVSWLFPFVDGHPPLGWHDTXXXXXXXXXXXXSQYVSMEIMKPPQTND 991
            GPTTIAARQSG+G+SWLFPFVDGHPPLGW+DT            SQYVSMEIMKPPQT+D
Sbjct: 230  GPTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLLVVSQYVSMEIMKPPQTDD 289

Query: 992  PAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPTVSENA 1171
            P QKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLR+LGGAKP V+ENA
Sbjct: 290  PTQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRQLGGAKPVVNENA 349

Query: 1172 SGIISAGRAKRSTSQPVLPRSTSQPGQPGERFKQLXXXXXXXXXXYNKALPENDIITSLS 1351
            SGII+AGRAK         RS +QPGQPG+RF+             +KAL   D+    S
Sbjct: 350  SGIITAGRAK---------RSAAQPGQPGDRFR---LKEEEKGKKLSKALQSEDVQALDS 397

Query: 1352 DTDEDSDGEINAK-DDTREEAYA-SGVNKQIPDYSEP 1456
             +DEDSD E   K ++  EEAYA S  +K++ D S P
Sbjct: 398  ASDEDSDEETKDKGEEVLEEAYASSSASKKVSDISRP 434


>gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]
          Length = 452

 Score =  567 bits (1462), Expect = e-159
 Identities = 312/460 (67%), Positives = 352/460 (76%), Gaps = 7/460 (1%)
 Frame = +2

Query: 98   MAKTVLSSSPFLNSPQFPLLPRHGQSKYSILTTPKRLSHNGTRVRMSFNGLPTPPIQSFE 277
            MAKT++SS PF+ +P  P  P    S++ +   P R   + TRVR+SF  +P  PI S +
Sbjct: 1    MAKTLISSPPFVGTP-LPS-PSSSLSRHGLHPLPNRRLAS-TRVRLSFQEIP--PILSLD 55

Query: 278  S-IDFEGMVRRAECLLYTLADAAVVTADSTG----SGSDGVAAQKGGGWFGFISDAMEVV 442
            S ID   +  R E LLYTLADAAV    ++G    + +DG A QK GGWFGFIS+AME V
Sbjct: 56   SSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADG-ATQKNGGWFGFISEAMEFV 114

Query: 443  LKVLKDGLSTVHVPYAYGFAIILLTVIVKVATLPLTKQQVESTMAMQNLQPKIKAIQERY 622
            LK+LKDG+  VHVPY+YGFAIILLTVIVKVAT PLTK+QVEST+AMQNLQPKIKAIQ+RY
Sbjct: 115  LKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY 174

Query: 623  AGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP 802
            AGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP
Sbjct: 175  AGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIP 234

Query: 803  SLGGPTTIAARQSGAGVSWLFPFVDGHPPLGWHDTXXXXXXXXXXXXSQYVSMEIMKPPQ 982
            SL GPTTIAARQSG+G+SWL PFVDGHPPLGWHDT            SQY +MEIMKPPQ
Sbjct: 235  SLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQY-AMEIMKPPQ 293

Query: 983  TNDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPTVS 1162
            T+DPAQKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKP V+
Sbjct: 294  TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVT 353

Query: 1163 ENASGIISAGRAKRSTSQPVLPRSTSQPGQPGERFKQLXXXXXXXXXXYNKALPENDIIT 1342
            ENAS II+AGRAK         RS SQP + G+RF+QL           NKALP  D+ T
Sbjct: 354  ENASEIITAGRAK---------RSVSQPSRAGDRFRQL--KEEEKGKKLNKALPAEDVQT 402

Query: 1343 --SLSDTDEDSDGEINAKDDTREEAYASGVNKQIPDYSEP 1456
              S SD++ +SDGE        EEAYAS  +KQ+PD S P
Sbjct: 403  MNSASDSEGESDGE--KGQGVLEEAYASNRSKQVPDPSRP 440