BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006264
         (681 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|2...   102   5e-20
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...    97   3e-18
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    96   5e-18
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    96   9e-18
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    90   4e-16

>ref|XP_002306011.1| predicted protein [Populus trichocarpa] gi|222848975|gb|EEE86522.1|
           predicted protein [Populus trichocarpa]
          Length = 462

 Score =  102 bits (255), Expect = 5e-20
 Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
 Frame = -3

Query: 589 FSSYSYILESSGDLLVVLRKI-VLEEDQSTSLKEGQRWP----------YKTVGFKVLKL 443
           ++S  Y++ESSG +L+V+R+I    +++   L EG              Y+T+ F + ++
Sbjct: 308 YTSRLYLVESSGGVLLVVRRIGEFVDEEGRVLHEGDLLTDKAAEPLVCAYRTLLFGLFRM 367

Query: 442 DFGAPNKWVEIQSLGNRSLFVGQNXXXXXXXXXXSGCKPNCIYFTDHFWSYFKEQG-FGG 266
           DF     WV + SL ++++FVG N           GC+ N +YFTD +W    E   +GG
Sbjct: 368 DFDKET-WVSMTSLDDQAVFVGGNHSASVLTCDLPGCEKNSVYFTDDYWERMNEDYLYGG 426

Query: 265 HDYGIFNLEEASIEKLLYPTDTLMIMPPPIWFAPNP 158
           HD G+FNL++ S+ K  Y  D L I PPP WF PNP
Sbjct: 427 HDMGVFNLKDKSV-KHFYQLDALKIQPPPCWFLPNP 461


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
 Frame = -3

Query: 655 EAGEGTHPYAEEVIGRHPSRSEFSSYSYILESSGDLLVVLRKIVLEEDQSTSLKEGQRWP 476
           +AGEG  P    +I             Y + S+GD+L+++R  VL++D S    E     
Sbjct: 227 DAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIR--VLDQDFSDHAGEESDLV 284

Query: 475 YKTVGFKVLKLDFGAPNKWVEIQSLGNRSLFVGQNXXXXXXXXXXSGCKPNCIYFTDHFW 296
           Y+TVGF+V K+++G    W  +++LG R LFVG N           GC  +CIYFTD + 
Sbjct: 285 YRTVGFEVFKMNWGLLT-WQRVETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTDDYS 343

Query: 295 SYFKEQGFGGHDYGIFNLEEASIEKL---LYPTDTLMIMPPPIWFAPNP 158
               +   G HD G+F L + SIE L      + + +  P PIW +PNP
Sbjct: 344 ESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSPNP 392


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 61/145 (42%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
 Frame = -3

Query: 574 YILESSGDLLVVLRKIVL----EEDQSTSLKEGQRWPYKTVGFKVLKLDFGAPNKWVEIQ 407
           Y++ES  +LL+V R + L    E DQ++ +       Y+T  F+V +LD  AP +W  + 
Sbjct: 255 YLVESGEELLLVTRYLDLTYDVEPDQTSLI-------YRTTRFQVCRLDLKAP-RWEVVS 306

Query: 406 SLGNRSLFVGQNXXXXXXXXXXSGCKPNCIYFTDHFWSYFKEQGFGG-HDYGIFNLEEAS 230
           SLG+R+LF+G+N           GCK NCIY+TD + S     G GG  D GIFNLE+ S
Sbjct: 307 SLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDY-SEDNYDGIGGEQDLGIFNLEDGS 365

Query: 229 IEKLLYPTDTLMI-MPPPIWFAPNP 158
           IE L  P     I  PPP+W  PNP
Sbjct: 366 IEPL--PCSHFRIRWPPPLWVTPNP 388


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 95.5 bits (236), Expect = 9e-18
 Identities = 61/145 (42%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
 Frame = -3

Query: 574 YILESSGDLLVVLRKIVL----EEDQSTSLKEGQRWPYKTVGFKVLKLDFGAPNKWVEIQ 407
           Y++ES  +LL+V R + L    E DQ++ +       Y+T  F+V +LD  AP +W  + 
Sbjct: 255 YLVESGEELLLVTRYLDLTYDVEXDQTSLI-------YRTTRFQVCRLDSKAP-RWEVVS 306

Query: 406 SLGNRSLFVGQNXXXXXXXXXXSGCKPNCIYFTDHFWSYFKEQGFGG-HDYGIFNLEEAS 230
           SLG+R+LF+G+N           GCK NCIY+TD + S     G GG  D GIFNLE+ S
Sbjct: 307 SLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDY-SEDNYDGIGGEQDLGIFNLEDGS 365

Query: 229 IEKLLYPTDTLMI-MPPPIWFAPNP 158
           IE L  P     I  PPP+W  PNP
Sbjct: 366 IEPL--PCSHFRIRWPPPLWVTPNP 388


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 90.1 bits (222), Expect = 4e-16
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
 Frame = -3

Query: 574 YILESSGDLLVVLRKIVLEEDQSTSLKEGQRWPYKTVGFKVLKLDFGAPNKWVEIQSLGN 395
           Y++ S   LL+V R + L+ +    +       YKT  F+V KLD   P +W  + SLG+
Sbjct: 259 YLVSSGDGLLLVTRYLDLDVEFDIFI-------YKTARFEVFKLDLNGP-RWERVTSLGD 310

Query: 394 RSLFVGQNXXXXXXXXXXSGCKPNCIYFTDHFWSYFKEQGFGGHDYGIFNLEEASIEKL- 218
             LF+G+N          SGC  +CIY+TD + +   +   G HD GIF L + SIE L 
Sbjct: 311 MMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLP 370

Query: 217 LYPTDTL--MIMPPPIWFAPNP 158
            YP ++   +  PPP+W +PNP
Sbjct: 371 CYPRNSYSRLQWPPPLWISPNP 392