BLASTX nr result

ID: Coptis24_contig00006263 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006263
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argo...    66   3e-09
emb|CBI17106.3| unnamed protein product [Vitis vinifera]               66   3e-09
ref|XP_002314317.1| argonaute protein group [Populus trichocarpa...    65   6e-09
ref|XP_002326400.1| argonaute protein group [Populus trichocarpa...    64   1e-08
ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argo...    60   2e-07

>ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis
           vinifera]
          Length = 1038

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   LVSMCNNKGMNINPAPLLPMRSARSDQIERTLVEAHTLSESKIAS-SXXXXXXXXXXXXX 178
           LV+MC +KGM  NP PLLP++SA  +QIE+ LV+ H  S +K+AS               
Sbjct: 625 LVNMCVSKGMVFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIIL 684

Query: 179 PDFTGSYGKIKR 214
           PD TGSYGKIKR
Sbjct: 685 PDVTGSYGKIKR 696


>emb|CBI17106.3| unnamed protein product [Vitis vinifera]
          Length = 1032

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   LVSMCNNKGMNINPAPLLPMRSARSDQIERTLVEAHTLSESKIAS-SXXXXXXXXXXXXX 178
           LV+MC +KGM  NP PLLP++SA  +QIE+ LV+ H  S +K+AS               
Sbjct: 619 LVNMCVSKGMVFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIIL 678

Query: 179 PDFTGSYGKIKR 214
           PD TGSYGKIKR
Sbjct: 679 PDVTGSYGKIKR 690


>ref|XP_002314317.1| argonaute protein group [Populus trichocarpa]
           gi|222850725|gb|EEE88272.1| argonaute protein group
           [Populus trichocarpa]
          Length = 987

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/71 (46%), Positives = 43/71 (60%)
 Frame = +2

Query: 2   LVSMCNNKGMNINPAPLLPMRSARSDQIERTLVEAHTLSESKIASSXXXXXXXXXXXXXP 181
           L+ MCNNKGM  NP P++P+RSA S QIE+ L + H    +++A+              P
Sbjct: 583 LMDMCNNKGMEFNPEPIIPIRSADSRQIEKALHDVHKQCTAELANQ-KGKQLQLLIIILP 641

Query: 182 DFTGSYGKIKR 214
           D TGSYGKIKR
Sbjct: 642 DVTGSYGKIKR 652


>ref|XP_002326400.1| argonaute protein group [Populus trichocarpa]
           gi|222833593|gb|EEE72070.1| argonaute protein group
           [Populus trichocarpa]
          Length = 850

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/71 (45%), Positives = 42/71 (59%)
 Frame = +2

Query: 2   LVSMCNNKGMNINPAPLLPMRSARSDQIERTLVEAHTLSESKIASSXXXXXXXXXXXXXP 181
           LV MCNNKGM INPAP+ P+RS   +Q+E+TL E H++  ++                 P
Sbjct: 459 LVGMCNNKGMVINPAPVFPIRSGHPNQLEKTLAEVHSMCNNE------RKQLQILIIILP 512

Query: 182 DFTGSYGKIKR 214
           D +GSYG IKR
Sbjct: 513 DVSGSYGTIKR 523


>ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis
           sativus]
          Length = 984

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/71 (45%), Positives = 42/71 (59%)
 Frame = +2

Query: 2   LVSMCNNKGMNINPAPLLPMRSARSDQIERTLVEAHTLSESKIASSXXXXXXXXXXXXXP 181
           LVSMCN+KGM  NP PL P+R+A ++QI+  L + H  S+S  +               P
Sbjct: 581 LVSMCNSKGMVFNPTPLFPVRNAHANQIDGALGDIH--SQSLKSLGPQGKSLQLLIIILP 638

Query: 182 DFTGSYGKIKR 214
           D +GSYGKIKR
Sbjct: 639 DISGSYGKIKR 649


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