BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006260
         (1561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512770.1| uv excision repair protein rad23, putative [...   472   e-130
ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23...   468   e-129
ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|2...   468   e-129
gb|ABK95041.1| unknown [Populus trichocarpa]                          464   e-128
ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23...   462   e-127

>ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
            gi|223547781|gb|EEF49273.1| uv excision repair protein
            rad23, putative [Ricinus communis]
          Length = 359

 Score =  472 bits (1214), Expect = e-130
 Identities = 255/378 (67%), Positives = 278/378 (73%), Gaps = 6/378 (1%)
 Frame = +1

Query: 118  VKTLKGSHFEIRVHPNDTMMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 297
            VKTLKGSHFEIRV PNDT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64

Query: 298  SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDSATGT 477
            +EDGFLVVML                                           S+S    
Sbjct: 65   TEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAP----------------SSNSTPAV 108

Query: 478  SEAP---ADTYGQAASNLVAGSNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAVD 648
               P    DTYG+AASNLVAG NLE  IQQ+MDMGGG+WDKETVTRALRAAYNNPERAVD
Sbjct: 109  EVQPPTQTDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTRALRAAYNNPERAVD 168

Query: 649  YLYSGIPEAAEVAVQVPSYPTSQQSVGPNLTAETGLAGAAPASGVPNSAPLNLFPQEAVN 828
            YLYSGIPE AEVAV V   P  Q +       ETG A AAP SGVPNS+PLN+FPQEA++
Sbjct: 169  YLYSGIPETAEVAVPVAHLPAGQAT-------ETGAAPAAPLSGVPNSSPLNMFPQEALS 221

Query: 829  XXXXXXXXXL---DFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAE 999
                     L   DFLRNN QFQTLR+MVQANPQILQPMLQEL KQNP LLR+IQEHHAE
Sbjct: 222  AAGGGSAGGLGSLDFLRNNAQFQTLRSMVQANPQILQPMLQELGKQNPQLLRMIQEHHAE 281

Query: 1000 FLRLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDR 1179
            FL+L+NEP++G+E D+F+Q EQDMPHAI+VTPAEQ AI RL AMGFDR LVIEAFLACDR
Sbjct: 282  FLQLLNEPLEGSEGDIFDQGEQDMPHAINVTPAEQAAIERLVAMGFDRALVIEAFLACDR 341

Query: 1180 NEELAANYLLENGGDYED 1233
            NE LAANYLLENGGD+ED
Sbjct: 342  NEVLAANYLLENGGDFED 359


>ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
            [Glycine max]
          Length = 367

 Score =  468 bits (1204), Expect = e-129
 Identities = 248/371 (66%), Positives = 274/371 (73%)
 Frame = +1

Query: 118  VKTLKGSHFEIRVHPNDTMMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 297
            VKTLKGSHFEIRV P+DT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKV 64

Query: 298  SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDSATGT 477
            SEDGFLVVML                                           +   T T
Sbjct: 65   SEDGFLVVMLSKGKTLGSAGISSTQFASNPPTTVSTPNSTPLVQPQSANNNASATDVT-T 123

Query: 478  SEAPADTYGQAASNLVAGSNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDYLY 657
            +    +TYGQAASNLVAGSNLE  IQQLMDMGGGSWD++TVT ALRAAYNNPERAVDYLY
Sbjct: 124  TNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAVDYLY 183

Query: 658  SGIPEAAEVAVQVPSYPTSQQSVGPNLTAETGLAGAAPASGVPNSAPLNLFPQEAVNXXX 837
            SGIP AAE+AV   SYP SQ       T ETG A      GVPNS+PLN+FPQE ++   
Sbjct: 184  SGIPVAAEIAVPAASYPISQ-------TTETGGASVGAVPGVPNSSPLNMFPQETISGAG 236

Query: 838  XXXXXXLDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAEFLRLVN 1017
                  LDFLRNN QFQ LR+MVQ+NPQILQP+LQEL KQNP LL LIQEHHAEFL+L+N
Sbjct: 237  AEIGS-LDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLIN 295

Query: 1018 EPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDRNEELAA 1197
            EPV+G+E D+F+QPEQDMPHAI+VTPAEQEAIGRLEAMGFDR  VIEAFLACD +E+LAA
Sbjct: 296  EPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAA 355

Query: 1198 NYLLENGGDYE 1230
            NYLLEN GD+E
Sbjct: 356  NYLLENAGDFE 366


>ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|222841402|gb|EEE78949.1|
            predicted protein [Populus trichocarpa]
          Length = 358

 Score =  468 bits (1203), Expect = e-129
 Identities = 248/376 (65%), Positives = 276/376 (73%), Gaps = 4/376 (1%)
 Frame = +1

Query: 118  VKTLKGSHFEIRVHPNDTMMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 297
            VKTLKGSHFEI+VHP DT+M VKKNIED QGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64

Query: 298  SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDSATGT 477
            +EDGFLVVML                                           + +    
Sbjct: 65   TEDGFLVVMLSKSKTGTAGTSSTQPVSTPPTTTPTSI---------------STPAPDAQ 109

Query: 478  SEAPADTYGQAASNLVAGSNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDYLY 657
            + A +DTYGQAASNLVAGSNLE  +QQ+MDMGGG+WDKETVTRALRAAYNNPERAVDYLY
Sbjct: 110  AFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAVDYLY 169

Query: 658  SGIPEAAEVAVQVPSYPTSQQSVGPNLTAETGLAGAAPAS--GVPNSAPLNLFPQ--EAV 825
            SGIPE AEVAV V  +P  Q +       ETG A AAPA   G PNS+PLN+FP+     
Sbjct: 170  SGIPETAEVAVPVARFPADQAT-------ETGAAPAAPAPAFGAPNSSPLNMFPETISGG 222

Query: 826  NXXXXXXXXXLDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAEFL 1005
                      LDFLRNN QFQ LR+MVQANPQILQPMLQEL KQNP LLR+IQEHHAEFL
Sbjct: 223  GGGAGGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFL 282

Query: 1006 RLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDRNE 1185
            +L+NEP+DG+E D+F+QP+QDMPHAI+VTPAEQEAI RLEAMGFDR LVIEAFLACDRNE
Sbjct: 283  QLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNE 342

Query: 1186 ELAANYLLENGGDYED 1233
            +LAANYLLEN GD+ED
Sbjct: 343  QLAANYLLENAGDFED 358


>gb|ABK95041.1| unknown [Populus trichocarpa]
          Length = 375

 Score =  464 bits (1195), Expect = e-128
 Identities = 251/378 (66%), Positives = 277/378 (73%), Gaps = 6/378 (1%)
 Frame = +1

Query: 118  VKTLKGSHFEIRVHPNDTMMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 297
            VKTLKGSHFEI+V P DT+M VKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVDNKV 64

Query: 298  SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDSA--T 471
            +EDGFLVVML                                           S SA  T
Sbjct: 65   TEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSASASDT 124

Query: 472  GTSEAPADTYGQAASNLVAGSNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDY 651
             T+ A +DTYGQAASNLVAGS+LE  IQQ+MD+GGG+WDKETVTRALRAAYNNPERAVDY
Sbjct: 125  ATANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDY 184

Query: 652  LYSGIPEAAEVAVQVPSYPTSQQSVGPNLTAETGLAGAAPA--SGVPNSAPLNLFPQ--E 819
            LYSGIPE AEVAV V  +P  Q         ETG A AAPA   G PNS+PLN+FP+   
Sbjct: 185  LYSGIPETAEVAVPVARFPADQG-------IETGAAPAAPALAPGGPNSSPLNMFPETLS 237

Query: 820  AVNXXXXXXXXXLDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAE 999
                        LDFLRNN QFQ LR+MVQANPQILQPMLQEL KQNP LLR+IQEH+AE
Sbjct: 238  GGGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAE 297

Query: 1000 FLRLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDR 1179
            FL+L+NEP+DG+E D+F+QP+QDMPHAI+VTPAEQEAI RL AMGFDR LVIEAFLACDR
Sbjct: 298  FLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDR 357

Query: 1180 NEELAANYLLENGGDYED 1233
            NEELAANYLLENG D+ED
Sbjct: 358  NEELAANYLLENGADFED 375


>ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
            [Glycine max]
          Length = 353

 Score =  462 bits (1188), Expect = e-127
 Identities = 246/371 (66%), Positives = 272/371 (73%)
 Frame = +1

Query: 118  VKTLKGSHFEIRVHPNDTMMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 297
            VKTLKGSHFEIRV P+DT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKV 64

Query: 298  SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDSATGT 477
            SEDGFLVVML                                           + +    
Sbjct: 65   SEDGFLVVMLSKGKTLGSAGISSTQACCFNPPTTVSTP---------------NSTPLVQ 109

Query: 478  SEAPADTYGQAASNLVAGSNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDYLY 657
                 +TYGQAASNLVAGSNLE  IQQLMDMGGGSWD++TVT ALRAAYNNPERAVDYLY
Sbjct: 110  PHVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAVDYLY 169

Query: 658  SGIPEAAEVAVQVPSYPTSQQSVGPNLTAETGLAGAAPASGVPNSAPLNLFPQEAVNXXX 837
            SGIP AAE+AV   SYP SQ       T ETG A      GVPNS+PLN+FPQE ++   
Sbjct: 170  SGIPVAAEIAVPAASYPISQ-------TTETGGASVGAVPGVPNSSPLNMFPQETISGAG 222

Query: 838  XXXXXXLDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAEFLRLVN 1017
                  LDFLRNN QFQ LR+MVQ+NPQILQP+LQEL KQNP LL LIQEHHAEFL+L+N
Sbjct: 223  AEIGS-LDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLIN 281

Query: 1018 EPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDRNEELAA 1197
            EPV+G+E D+F+QPEQDMPHAI+VTPAEQEAIGRLEAMGFDR  VIEAFLACD +E+LAA
Sbjct: 282  EPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAA 341

Query: 1198 NYLLENGGDYE 1230
            NYLLEN GD+E
Sbjct: 342  NYLLENAGDFE 352