BLASTX nr result
ID: Coptis24_contig00006223
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006223
(1567 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631761.1| PREDICTED: transcription initiation factor T... 845 0.0
ref|XP_002285276.2| PREDICTED: transcription initiation factor T... 843 0.0
ref|XP_004145505.1| PREDICTED: transcription initiation factor T... 821 0.0
ref|XP_002515435.1| protein with unknown function [Ricinus commu... 820 0.0
ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|2... 818 0.0
>ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3|
unnamed protein product [Vitis vinifera]
Length = 676
Score = 845 bits (2182), Expect = 0.0
Identities = 416/521 (79%), Positives = 458/521 (87%), Gaps = 6/521 (1%)
Frame = -1
Query: 1546 SLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIINEHINFQVSPGQPISISDDADAVIL 1367
SLRQSKV+IKICQYSYELLLQYLHKTQSITMLG+INEHINFQVSPGQP SISDDA+ V L
Sbjct: 155 SLRQSKVSIKICQYSYELLLQYLHKTQSITMLGVINEHINFQVSPGQPASISDDAEVVTL 214
Query: 1366 VGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEGDVDENKKRSGD 1187
+GSSQD A QIN+KEI WGLL S+E+RLEKA L+SDSEK EGE KE D +ENKKRS +
Sbjct: 215 IGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAE 274
Query: 1186 GGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTEVEHSILEDLRN 1007
GGKQG+S+KKLKKDK+VG GK+ R E N VSMAPRVKPEL LPV+PTEVE SILEDLRN
Sbjct: 275 GGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTEVEQSILEDLRN 334
Query: 1006 RVQLGSAALPSVCFYTFLNTHNGLNCSSISQDGSLVAGGFSDSSLKVWDMAKIGQ----A 839
RVQL S ALPSV FYTF+NTHN LNCSSIS DGSLVAGGFSDSSLKVWDM+K+GQ +
Sbjct: 335 RVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATS 394
Query: 838 TVQGENG-TPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSSSSDSTIRLWST 662
+QG+N PTEQ+LG+ G+RSYTL QGH+GPVYS+TFSPLGDFILSSS+DSTIRLWST
Sbjct: 395 IMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSSSADSTIRLWST 454
Query: 661 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 482
KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC
Sbjct: 455 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 514
Query: 481 VRWHANCNYIATGSSDKTVRLWDVQSGECVQIFIGHRSMILSLAMSPDGRYMASGDEEGT 302
V+WH NCNYIATGSSDKTVRLWDVQSGECV+IFIGHRSM+LSLAMSPDG+YMASGDE+GT
Sbjct: 515 VQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGT 574
Query: 301 IMMWDLSSGRCITPLMGHTSCVWTLDFXXXXXXXXXXXADCTVKLWDVTASTKAPKMDE- 125
IMMWDLSSGRC+ PLMGH SCVW+L F AD TVKLWDVT STK P+ +E
Sbjct: 575 IMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLLASGSADSTVKLWDVTTSTKVPRSEEN 634
Query: 124 KVGCTNRLRSLKTLPTKCSPVYTVQFSRRNLLFAAGVLSRS 2
K G T+RLRSLKTLPTK +PVY+++FSRRNLLFAAG LS+S
Sbjct: 635 KSGNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKS 675
>ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like
isoform 1 [Vitis vinifera]
Length = 667
Score = 843 bits (2179), Expect = 0.0
Identities = 415/520 (79%), Positives = 457/520 (87%), Gaps = 5/520 (0%)
Frame = -1
Query: 1546 SLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIINEHINFQVSPGQPISISDDADAVIL 1367
SLRQSKV+IKICQYSYELLLQYLHKTQSITMLG+INEHINFQVSPGQP SISDDA+ V L
Sbjct: 148 SLRQSKVSIKICQYSYELLLQYLHKTQSITMLGVINEHINFQVSPGQPASISDDAEVVTL 207
Query: 1366 VGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEGDVDENKKRSGD 1187
+GSSQD A QIN+KEI WGLL S+E+RLEKA L+SDSEK EGE KE D +ENKKRS +
Sbjct: 208 IGSSQDDANQINQKEIHWGLLEGSLEERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAE 267
Query: 1186 GGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTEVEHSILEDLRN 1007
GGKQG+S+KKLKKDK+VG GK+ R E N VSMAPRVKPEL LPV+PTEVE SILEDLRN
Sbjct: 268 GGKQGSSIKKLKKDKVVGAAGKTARPEANAVSMAPRVKPELALPVMPTEVEQSILEDLRN 327
Query: 1006 RVQLGSAALPSVCFYTFLNTHNGLNCSSISQDGSLVAGGFSDSSLKVWDMAKIGQ----A 839
RVQL S ALPSV FYTF+NTHN LNCSSIS DGSLVAGGFSDSSLKVWDM+K+GQ +
Sbjct: 328 RVQLSSMALPSVSFYTFINTHNSLNCSSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATS 387
Query: 838 TVQGENG-TPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSSSSDSTIRLWST 662
+QG+N PTEQ+LG+ G+RSYTL QGH+GPVYS+TFSPLGDFILSSS+DSTIRLWST
Sbjct: 388 IMQGDNDLAPTEQILGTSGGKRSYTLFQGHSGPVYSATFSPLGDFILSSSADSTIRLWST 447
Query: 661 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 482
KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC
Sbjct: 448 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 507
Query: 481 VRWHANCNYIATGSSDKTVRLWDVQSGECVQIFIGHRSMILSLAMSPDGRYMASGDEEGT 302
V+WH NCNYIATGSSDKTVRLWDVQSGECV+IFIGHRSM+LSLAMSPDG+YMASGDE+GT
Sbjct: 508 VQWHINCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGT 567
Query: 301 IMMWDLSSGRCITPLMGHTSCVWTLDFXXXXXXXXXXXADCTVKLWDVTASTKAPKMDEK 122
IMMWDLSSGRC+ PLMGH SCVW+L F AD TVKLWDVT STK P+ +E
Sbjct: 568 IMMWDLSSGRCVMPLMGHMSCVWSLAFSCEGSLLASGSADSTVKLWDVTTSTKVPRSEEN 627
Query: 121 VGCTNRLRSLKTLPTKCSPVYTVQFSRRNLLFAAGVLSRS 2
G T+RLRSLKTLPTK +PVY+++FSRRNLLFAAG LS+S
Sbjct: 628 -GNTSRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKS 666
>ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
[Cucumis sativus] gi|449485181|ref|XP_004157092.1|
PREDICTED: transcription initiation factor TFIID subunit
5-like [Cucumis sativus]
Length = 674
Score = 821 bits (2120), Expect = 0.0
Identities = 400/521 (76%), Positives = 453/521 (86%), Gaps = 6/521 (1%)
Frame = -1
Query: 1546 SLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIINEHINFQVSPGQPISISDDADAVIL 1367
SLRQ KVNIKICQYSYE+LLQYLHKTQ+ +LGIINE INFQV PGQP SISDDA+ V L
Sbjct: 150 SLRQGKVNIKICQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAELVTL 209
Query: 1366 VGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEGDVDENKKRSGD 1187
GS+QDTA QIN+KE+ WGLL DS+E+RLEKA+ L+SDSEK EGE K+GDVDENKKR+ +
Sbjct: 210 TGSTQDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENKKRTAE 269
Query: 1186 GGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTEVEHSILEDLRN 1007
GGKQG S+KK+KKDK TGK++R+E N+ SMAPRVKPEL LP++ TEVE SILEDLRN
Sbjct: 270 GGKQGGSIKKVKKDKTASATGKTLRAEANSASMAPRVKPELALPIISTEVEESILEDLRN 329
Query: 1006 RVQLGSAALPSVCFYTFLNTHNGLNCSSISQDGSLVAGGFSDSSLKVWDMAKIGQ----A 839
RVQL S ALPSV FYTF+NTHNGLNCSSIS DG+LVAGGFSDSSLKVWDMAK+GQ
Sbjct: 330 RVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNT 389
Query: 838 TVQGENGTPT-EQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSSSSDSTIRLWST 662
+Q EN T + + G +G+R YTL QGH+GPV+S+TFSP+GDF+LSSS+D+TIRLWST
Sbjct: 390 VLQDENDMSTSDPVTGHTSGKRPYTLFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWST 449
Query: 661 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 482
KLNANLVCYKGHNYPVWDVQFSP+GHYFAS SHDRTARIWSMDRIQPLRIMAGHLSDVDC
Sbjct: 450 KLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDC 509
Query: 481 VRWHANCNYIATGSSDKTVRLWDVQSGECVQIFIGHRSMILSLAMSPDGRYMASGDEEGT 302
V+WHANCNYIATGSSDKTVRLWDVQSGECV+IFIGHRSMILSLAMSPDGR+MASGDE+GT
Sbjct: 510 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGT 569
Query: 301 IMMWDLSSGRCITPLMGHTSCVWTLDFXXXXXXXXXXXADCTVKLWDVTASTKAPKMDE- 125
IMMWDLS+GRC+TPL+GHTSCVWTL F ADCTVKLWDVT+STK P+ DE
Sbjct: 570 IMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKPPRTDEN 629
Query: 124 KVGCTNRLRSLKTLPTKCSPVYTVQFSRRNLLFAAGVLSRS 2
K G NRLRSLKTLPTK +PVY+++FSRRNLLFAAG LS++
Sbjct: 630 KTGTPNRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKN 670
>ref|XP_002515435.1| protein with unknown function [Ricinus communis]
gi|223545379|gb|EEF46884.1| protein with unknown function
[Ricinus communis]
Length = 670
Score = 820 bits (2118), Expect = 0.0
Identities = 407/521 (78%), Positives = 450/521 (86%), Gaps = 6/521 (1%)
Frame = -1
Query: 1546 SLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIINEHINFQVSPGQPISISDDADAVIL 1367
+LRQSKVNIKICQYS ELL+QYL T+S MLGI+NEHINFQVSPGQP SISDD + V L
Sbjct: 149 TLRQSKVNIKICQYSNELLMQYLRNTKSTMMLGIVNEHINFQVSPGQPSSISDDDEVVTL 208
Query: 1366 VGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEGDVDENKKRSGD 1187
+GSSQD A QIN+KEI WGLL DS+E+ LEKA L SDSEKTEGE KEGD+DE+KKRS +
Sbjct: 209 IGSSQDAANQINKKEIHWGLLEDSMEEHLEKAGGLHSDSEKTEGEAKEGDMDESKKRSIE 268
Query: 1186 GGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTEVEHSILEDLRN 1007
GGKQGTSVKK+KKDK T K VR ETN+ APRVKPEL LPV+PTEVE SILEDLRN
Sbjct: 269 GGKQGTSVKKMKKDKATSATAKVVRPETNSAPTAPRVKPELPLPVIPTEVEQSILEDLRN 328
Query: 1006 RVQLGSAALPSVCFYTFLNTHNGLNCSSISQDGSLVAGGFSDSSLKVWDMAKIGQ----A 839
RVQL SAALPSV FYTF+NTHNGLNCSSIS DGSLVAGGFSDSSLKVWDMAK+GQ +
Sbjct: 329 RVQLSSAALPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQGSNS 388
Query: 838 TVQGENGTP-TEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSSSSDSTIRLWST 662
+QG N T +E LG+ +RSYTL QGH+GPVYS+TFSPLGDFILSSS+D+TIRLWST
Sbjct: 389 VLQGANDTAASEHFLGANGAKRSYTLFQGHSGPVYSATFSPLGDFILSSSADTTIRLWST 448
Query: 661 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 482
KLNANLVCYKGHNYPVWDVQFSP+GHYFAS+SHDRTARIWSMDR+QPLRI+AGHLSDVDC
Sbjct: 449 KLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRLQPLRILAGHLSDVDC 508
Query: 481 VRWHANCNYIATGSSDKTVRLWDVQSGECVQIFIGHRSMILSLAMSPDGRYMASGDEEGT 302
V+WHANCNYIATGSSDKTVRLWDVQSGECV+IFIGHRSMILSLAMSPDGR+MAS DE+GT
Sbjct: 509 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRFMASADEDGT 568
Query: 301 IMMWDLSSGRCITPLMGHTSCVWTLDFXXXXXXXXXXXADCTVKLWDVTASTKAPKMDE- 125
IMMWDLSSGRC++PLMGH SCVWTL F ADCTVKLWDVT+STK K +E
Sbjct: 569 IMMWDLSSGRCVSPLMGHNSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKVTKAEES 628
Query: 124 KVGCTNRLRSLKTLPTKCSPVYTVQFSRRNLLFAAGVLSRS 2
K G NRLRSLKTLPTK +PVY+++FSRRNLLFAAGVLS+S
Sbjct: 629 KSGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGVLSKS 669
>ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1|
predicted protein [Populus trichocarpa]
Length = 675
Score = 818 bits (2114), Expect = 0.0
Identities = 405/521 (77%), Positives = 450/521 (86%), Gaps = 6/521 (1%)
Frame = -1
Query: 1546 SLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIINEHINFQVSPGQPISISDDADAVIL 1367
+LRQSKVNIKICQYS EL++QYL K++S +LGI+NEHINFQVSPGQPISISDD DAV L
Sbjct: 154 TLRQSKVNIKICQYSDELMMQYLRKSKSTIILGIVNEHINFQVSPGQPISISDDPDAVTL 213
Query: 1366 VGSSQDTAKQINEKEIRWGLLVDSIEDRLEKASSLMSDSEKTEGEFKEGDVDENKKRSGD 1187
+GSSQD A QIN+KEI WGLL DS+E+RLEK +SDSEKTEGE KEGD+DENKKRS D
Sbjct: 214 IGSSQDAANQINKKEIHWGLLEDSLEERLEKTGGFLSDSEKTEGETKEGDMDENKKRSMD 273
Query: 1186 GGKQGTSVKKLKKDKIVGTTGKSVRSETNTVSMAPRVKPELTLPVLPTEVEHSILEDLRN 1007
GGKQG S+KK KKDK T K+VR E NTV APRVKPEL LPV+P EVE SILEDLRN
Sbjct: 274 GGKQGASIKKSKKDKAASATAKAVRLEANTVPAAPRVKPELPLPVMPAEVEQSILEDLRN 333
Query: 1006 RVQLGSAALPSVCFYTFLNTHNGLNCSSISQDGSLVAGGFSDSSLKVWDMAKIGQ----A 839
RVQL S LPSV FYTF+NTHNGLNCSSIS DGSLVAGGFSDSSLKVWDMAK+GQ +
Sbjct: 334 RVQLSSTTLPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNS 393
Query: 838 TVQGEN-GTPTEQLLGSENGRRSYTLLQGHAGPVYSSTFSPLGDFILSSSSDSTIRLWST 662
+QGEN P+E +LG +G+RSYTL QGH+GPV+S+TFSPLGDFILSSS+D+T+RLWST
Sbjct: 394 ILQGENDAAPSEHVLGPNSGKRSYTLFQGHSGPVHSATFSPLGDFILSSSADTTVRLWST 453
Query: 661 KLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 482
+LNANLVCYKGHNYPVWDVQFSP+GHYFAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDC
Sbjct: 454 ELNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDC 513
Query: 481 VRWHANCNYIATGSSDKTVRLWDVQSGECVQIFIGHRSMILSLAMSPDGRYMASGDEEGT 302
V+WHANCNYIATGSSDKTVRLWDVQSGECV+IFIGHRSMILSLAMSPDGRYMASGDE+G+
Sbjct: 514 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGS 573
Query: 301 IMMWDLSSGRCITPLMGHTSCVWTLDFXXXXXXXXXXXADCTVKLWDVTASTKAPKMDE- 125
IMMWDLSSGRCI+P+MGH SCVW+L F ADCTVKLWDVT STK K +E
Sbjct: 574 IMMWDLSSGRCISPMMGHHSCVWSLAFSCESSLLASGSADCTVKLWDVTTSTKPAKTEES 633
Query: 124 KVGCTNRLRSLKTLPTKCSPVYTVQFSRRNLLFAAGVLSRS 2
K G T+RLR LKTLPTK +PV T++FSRRNLLFAAG LSRS
Sbjct: 634 KSGNTHRLRFLKTLPTKSTPVSTLRFSRRNLLFAAGALSRS 674