BLASTX nr result
ID: Coptis24_contig00006060
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006060
(1972 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247... 122 3e-58
ref|XP_002523656.1| chromodomain helicase DNA binding protein, p... 111 4e-43
ref|XP_003524120.1| PREDICTED: uncharacterized protein LOC100793... 101 1e-40
ref|XP_002329920.1| chromatin remodeling complex subunit [Populu... 99 7e-40
ref|XP_002303505.1| chromatin remodeling complex subunit [Populu... 96 8e-36
>ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera]
Length = 2355
Score = 122 bits (307), Expect(3) = 3e-58
Identities = 73/148 (49%), Positives = 94/148 (63%), Gaps = 6/148 (4%)
Frame = +3
Query: 621 SNSHLEQPFLPNI--VASLGTMGMHQSNSHDLQQKVLVREANKYVKLLFHFNKSPNYVHN 794
SN H+EQPFL N +SLG++G+ S+S DL QK A KY KL ++S N + +
Sbjct: 1979 SNIHMEQPFLLNSFGTSSLGSLGLTSSSSFDLLQKEDELGATKYGKLPSLLDRSLNLLRD 2038
Query: 795 LHTS----DSISTRSLLDQNKQLYFGHPSVSNDATGSESAKKKLPRWLQEAVSGSAGPPV 962
H + +S S+ + D NK L + S + GS +K KLP WL+EAVS + PP
Sbjct: 2039 SHNNMGAGESTSSGLMPDPNKGLSLSN-SKGKEVEGSSPSKNKLPHWLREAVSAPSKPPD 2097
Query: 963 PELPPTVSAIAHSVRLLYGEDKPSIPPF 1046
PELPPTVSAIA SVRLLYGE+KP+IPPF
Sbjct: 2098 PELPPTVSAIAQSVRLLYGEEKPTIPPF 2125
Score = 113 bits (282), Expect(3) = 3e-58
Identities = 66/131 (50%), Positives = 82/131 (62%), Gaps = 3/131 (2%)
Frame = +2
Query: 1139 DIAATSKNFEKSLLGDSLASGSTLLAPS---LPSSMARPSGFPWIEAPKNLPSLNLNMTT 1309
D+A TS NF+ SL G++ AS S LAP LP + A SG PWIE NLP LN+NM
Sbjct: 2158 DVAGTSWNFQSSLHGENFASSSVPLAPPFPLLPQNTAGASGLPWIEPNLNLPPLNINMMN 2217
Query: 1310 PQSSSSFVNH*KKPGIQRSPSPEILQLVASFVGPGPHALSIPGMFNSSSVRNELHLPKPL 1489
P SSSSF+ KK SPSPE+LQLVAS V PGPH +PGM +S + ++L LPK +
Sbjct: 2218 PSSSSSFLKPQKK-STGLSPSPEVLQLVASCVAPGPHIPPVPGMPSSGFLDSKLPLPKFI 2276
Query: 1490 SNGDERESREA 1522
G+ +S A
Sbjct: 2277 DRGEFPDSTGA 2287
Score = 39.3 bits (90), Expect(3) = 3e-58
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 1600 SGDSS-KAHSDPRQNDKAAIEEISSEETLSDHRRSEQK 1710
SGDSS K SDP + +EEISSE T+SDHR S+ +
Sbjct: 2315 SGDSSSKTQSDPSHAEHPNVEEISSEGTVSDHRVSDHE 2352
>ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
communis] gi|223537108|gb|EEF38742.1| chromodomain
helicase DNA binding protein, putative [Ricinus communis]
Length = 2257
Score = 111 bits (278), Expect(3) = 4e-43
Identities = 66/150 (44%), Positives = 89/150 (59%), Gaps = 6/150 (4%)
Frame = +3
Query: 621 SNSHLEQPFLPNIVAS--LGTMGMHQSNSHDLQQKVLVREANKYVKLLFHFNKSPNYV-- 788
S S+ E PFL N + S LG++G + +S D + A KY KL ++S N
Sbjct: 1883 STSNSEMPFLLNSLGSSNLGSLGFNSFSSFDSHHREDEHNATKYGKLPSLLDRSLNLACD 1942
Query: 789 --HNLHTSDSISTRSLLDQNKQLYFGHPSVSNDATGSESAKKKLPRWLQEAVSGSAGPPV 962
+N+ +S + + NK+L H S + GS S+K KLP WL+EAVS A PP
Sbjct: 1943 SQNNVGNGESSGSALFPEPNKRLNNSH-SKGKEVVGSSSSKNKLPHWLREAVSSPAKPPE 2001
Query: 963 PELPPTVSAIAHSVRLLYGEDKPSIPPFTV 1052
P+LPPTVSAIA SVR+LYGE+KP+IPPF +
Sbjct: 2002 PDLPPTVSAIAQSVRVLYGENKPTIPPFVI 2031
Score = 72.8 bits (177), Expect(3) = 4e-43
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Frame = +2
Query: 1139 DIAATSKNFEKSLLGDSLASGSTLLAPSLPSSMARP---SGFPWIEAPKNLPSLNLNMTT 1309
D A + +NF S+LG ++AS S AP+ P SG ++ N NL+M
Sbjct: 2063 DTAGSMQNFRSSILGSNIASSSIPPAPTFQPLQLLPPGTSGHTRNDSDPNEHFRNLDMIN 2122
Query: 1310 PQSSSSFVNH*KKPGIQRSPSPEILQLVASFVGPGPHALSIPGMFNSSSVRNELHLPKPL 1489
+SS+ KK + SPSPE+LQLVA+ V PGPH S GM +SS + ++L LPK +
Sbjct: 2123 -SLTSSYSKLPKKTSMGLSPSPEVLQLVAACVAPGPHLSSSSGMTSSSFLESKLPLPKSV 2181
Query: 1490 SNGDERESREAKNVCKKDEVGQSSQVGGSDQLPVER 1597
DE +A+ +KD+ Q LP E+
Sbjct: 2182 ---DEVGVSDAQGAEEKDKDMQGLPPDTQIILPEEK 2214
Score = 39.7 bits (91), Expect(3) = 4e-43
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 1603 GDSSKAHSDPRQNDKAAIEEISSEETLSDHRRSEQKE 1713
GDSSK+ ++ Q +K +EEISSE T+SDH SE ++
Sbjct: 2221 GDSSKSGTNNSQTEKPDVEEISSEGTVSDHLVSEHEQ 2257
>ref|XP_003524120.1| PREDICTED: uncharacterized protein LOC100793933 [Glycine max]
Length = 2325
Score = 101 bits (251), Expect(3) = 1e-40
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Frame = +3
Query: 636 EQPFLPNI--VASLGTMGMHQSNSHDLQQKVLVREANKYVKLLFHFNKSPNYVHN--LHT 803
E+PFL N ++LG++G++ S S D QK + +K KL F+ S N V + ++
Sbjct: 1967 ERPFLLNSFGTSTLGSLGLNCSGSIDAHQKEDGQGNSKRGKLPVLFDGSSNDVRDNCVNV 2026
Query: 804 SDSISTRSLLDQNKQLYFGHPSVSNDATGSESAKKKLPRWLQEAVSGSAGPPVPELPPTV 983
+ ST S L N S + GS ++K KLP WL+EAVS A P PELPPTV
Sbjct: 2027 GNGESTSSGLLSNPSRPDLLHSKGEEVGGSSTSKDKLPHWLREAVSSPAKLPDPELPPTV 2086
Query: 984 SAIAHSVRLLYGEDKPSIPPFTV 1052
SAIA SVRLLYGEDKP+IPPF +
Sbjct: 2087 SAIAQSVRLLYGEDKPTIPPFVI 2109
Score = 77.0 bits (188), Expect(3) = 1e-40
Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = +2
Query: 1130 GLADIAATSKNFEKSLLGDSLASGSTLLAPSLPS-SMARPSGFPWIEAPKNLPSLNLNMT 1306
GL D A S++ +S D+ AS S L PSLP S G IE+ NLP LNL +
Sbjct: 2138 GLPDFAGNSRDLHRSHHVDNGASSSLPLGPSLPLLSHTGALGTQQIESDLNLPPLNLKVA 2197
Query: 1307 TPQSSSSFVNH*KKPGIQRSPSPEILQLVASFVGPGPHALSIPGMFNSSSVRNELHLPKP 1486
+ SS KK SPSPE+LQLVAS V PGPH SI G S+ + ++L LP+P
Sbjct: 2198 SSSHSS------KKASSGLSPSPEVLQLVASCVAPGPHLPSITGA--SNFLDSKLPLPRP 2249
Query: 1487 LSNGDERESREA 1522
+ ++S A
Sbjct: 2250 VGRAKFKDSEGA 2261
Score = 37.4 bits (85), Expect(3) = 1e-40
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 1600 SGDSSKAHSDPRQNDKAAIEEISSEETLSDHRRSEQK 1710
SGDSSK SDP + ++ E+SSE T+SDH +Q+
Sbjct: 2288 SGDSSKTQSDPSRVERPDEVEVSSEGTVSDHAVRDQE 2324
Score = 59.3 bits (142), Expect = 4e-06
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +1
Query: 514 WVGVRMYGRGNWDYMLRDLKLKFSKHRTSKELSV 615
W+GVR +GRGNWD MLRD KLKFSK++TS++LSV
Sbjct: 1810 WIGVRRHGRGNWDAMLRDPKLKFSKYKTSEDLSV 1843
>ref|XP_002329920.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222871157|gb|EEF08288.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 2332
Score = 99.0 bits (245), Expect(3) = 7e-40
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 9/156 (5%)
Frame = +3
Query: 612 SELSNSHL--EQPFLPNI--VASLGTMGMHQSNSHDLQQKVLVREANKYVKLLFHFNKSP 779
S + SH+ E+PFL N ++L T+G++ S++ DLQ++ KY K ++S
Sbjct: 1960 SSMGPSHVSSEKPFLLNSFGASTLATLGLNSSSNFDLQRREEEYNTMKYGKSPSLLDRSL 2019
Query: 780 NYVHNLHT---SDSISTRSL-LDQNKQLYFGHPSVSNDATGSESAKKKLPRWLQEAVSGS 947
+ +H+ H S +S+ +L LD NK L H S + GS S+ K LP WL+EAVS
Sbjct: 2020 HILHDSHNNVGSGELSSSALFLDPNKVLNPFH-SKGKEVVGSSSSNK-LPHWLREAVSAP 2077
Query: 948 -AGPPVPELPPTVSAIAHSVRLLYGEDKPSIPPFTV 1052
P +P+LPPTVSAIA SVR+LYGE++P+IPPF V
Sbjct: 2078 PVKPAIPDLPPTVSAIAQSVRVLYGENQPTIPPFIV 2113
Score = 76.3 bits (186), Expect(3) = 7e-40
Identities = 47/115 (40%), Positives = 69/115 (60%)
Frame = +2
Query: 1139 DIAATSKNFEKSLLGDSLASGSTLLAPSLPSSMARPSGFPWIEAPKNLPSLNLNMTTPQS 1318
DI +S++F S+ G ++AS S P +P + SG PW E+ NLP +L+ +
Sbjct: 2145 DIGGSSQDFRNSIHGSNVASTSI---PQVPPLVHETSG-PWNESDFNLPLPSLHKMNSLT 2200
Query: 1319 SSSFVNH*KKPGIQRSPSPEILQLVASFVGPGPHALSIPGMFNSSSVRNELHLPK 1483
SS+++N KK + SPSPE+LQLVAS V PGPH S G ++S +++ LPK
Sbjct: 2201 SSAYLNIQKKTTMGLSPSPEVLQLVASCVAPGPHLSSGSGATSASLHESKVPLPK 2255
Score = 38.1 bits (87), Expect(3) = 7e-40
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 1600 SGDSSKAHSDPRQNDKAAIEEISSEETLSDHRRSEQK 1710
SGDSSK SD + +E+ISSE TLSDH S+Q+
Sbjct: 2295 SGDSSKTESDLSPIKQPDVEDISSEGTLSDHPVSDQE 2331
>ref|XP_002303505.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222840937|gb|EEE78484.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 2327
Score = 95.9 bits (237), Expect(3) = 8e-36
Identities = 62/149 (41%), Positives = 87/149 (58%), Gaps = 10/149 (6%)
Frame = +3
Query: 636 EQPFLPNI--VASLGTMGMHQSNSHDLQQKVLVREANKYVKLLFHFNKSPNYVHNLHTS- 806
E+PFL + ++L T+G++ S S DLQ++ E KY KL +KS +H S
Sbjct: 1970 EKPFLLSSFGASNLATLGLNSSTSFDLQRREEEYETMKYGKLPSLLDKS------VHISR 2023
Query: 807 DSISTRSLLDQNKQLYFGHPSVSNDATGSE-------SAKKKLPRWLQEAVSGSAGPPVP 965
DS + + + + F HPS + S+ S+ KLP WL+EAV+ PP P
Sbjct: 2024 DSQNNVGIGELSNSGLFLHPSKFLNPINSKGKEVVGSSSSNKLPHWLREAVTAPVKPPEP 2083
Query: 966 ELPPTVSAIAHSVRLLYGEDKPSIPPFTV 1052
ELPPTVSAIA SVR+LYGE++P+IPPF +
Sbjct: 2084 ELPPTVSAIAQSVRVLYGENQPTIPPFVI 2112
Score = 67.0 bits (162), Expect(3) = 8e-36
Identities = 43/115 (37%), Positives = 67/115 (58%)
Frame = +2
Query: 1139 DIAATSKNFEKSLLGDSLASGSTLLAPSLPSSMARPSGFPWIEAPKNLPSLNLNMTTPQS 1318
D ++++F + G ++AS S + P +P + SG PW E+ NLP +L+ +
Sbjct: 2144 DTGGSTQDFRYGIHGCNVASTS-IPPPLVPET----SGRPWNESDLNLPLPSLSKMNSLT 2198
Query: 1319 SSSFVNH*KKPGIQRSPSPEILQLVASFVGPGPHALSIPGMFNSSSVRNELHLPK 1483
SS+++N KK + SPSPE+LQLVAS V PGPH S G +SS +++ + K
Sbjct: 2199 SSAYLNVQKKTTMGLSPSPEVLQLVASCVAPGPHLTSGSGTTSSSIHESKVPMRK 2253
Score = 36.6 bits (83), Expect(3) = 8e-36
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 1600 SGDSSKAHSDPRQNDKAAIEEISSEETLSDHRRSEQK 1710
SGDSSK SD K +E+ISSE T+SDH S+ +
Sbjct: 2290 SGDSSKTESDFSPIKKPDVEDISSEGTVSDHPLSDHE 2326
Score = 60.8 bits (146), Expect = 1e-06
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 YFWVGVRMYGRGNWDYMLRDLKLKFSKHRTSKELSVSC---QIHTWSSHFFPIL 660
+ WVGVR YGRGNWD MLRD +LKFSK++TS++L+V Q+ FP+L
Sbjct: 1819 FLWVGVRRYGRGNWDAMLRDPRLKFSKYKTSEDLAVRWEEEQLKFLDGSAFPLL 1872