BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006053
         (978 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containi...   391   e-106
ref|XP_002515001.1| pentatricopeptide repeat-containing protein,...   388   e-105
ref|XP_002315631.1| predicted protein [Populus trichocarpa] gi|2...   366   4e-99
ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containi...   357   2e-96
ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containi...   357   2e-96

>ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  391 bits (1004), Expect = e-106
 Identities = 174/273 (63%), Positives = 228/273 (83%)
 Frame = -2

Query: 821 VEVLASKVRVGNNEEEVIQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 642
           ++++ S++R G++++EV ++L+ D+ C +I +S  LVD LL RF+DDWKSALG+F+WA +
Sbjct: 45  IDIIVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAES 104

Query: 641 RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 462
           R+GY+H P+AY   VDILGK K++ +M  L++EM +GN V L  +AK MRRL GAG+WED
Sbjct: 105 RLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWED 164

Query: 461 AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 282
           A+++FDDLG F LEKNTE+MNLLLDTLCKE++V  AR +FLELK +ISPN HTFNIFIHG
Sbjct: 165 AVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHG 224

Query: 281 WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 102
           WCK NR+DEA WT+QEMKGHGC PC+I+YSTI+Q+YC Q NFRKVYELLD+M+AQGC+PN
Sbjct: 225 WCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPN 284

Query: 101 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCK 3
           VVTYTT+M SL K +++EEALQ+ ERM+S  CK
Sbjct: 285 VVTYTTIMCSLTKVEQFEEALQIAERMRSVGCK 317


>ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546052|gb|EEF47555.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 466

 Score =  388 bits (997), Expect = e-105
 Identities = 177/273 (64%), Positives = 229/273 (83%)
 Frame = -2

Query: 821 VEVLASKVRVGNNEEEVIQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 642
           ++V+ +K+RVG++ +E++Q+L+ D+ C SI LS  LVD LLFRF+DDWKSALGVF+WA +
Sbjct: 18  IDVIVAKIRVGSSHDEIVQSLVHDEVCNSIHLSHELVDKLLFRFKDDWKSALGVFRWAES 77

Query: 641 RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 462
           R GYKH+P+AY   VDI+GK K++ +M  LL+EM +G  VTL+ + K MRR  GA +WE+
Sbjct: 78  RAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRFAGARQWEN 137

Query: 461 AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 282
            +++FD LGTFGLEKNTE+MNLLLDTLCKE++V LAR++FL+LK +ISPNA+TFNIFIHG
Sbjct: 138 VLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSHISPNANTFNIFIHG 197

Query: 281 WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 102
           WCK NR++EA WT+QEMKGHGCTPC+I+YSTIVQ YC++ NF KVYELLDEM AQG  PN
Sbjct: 198 WCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPN 257

Query: 101 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCK 3
           VVTYT++M +LAK +EYEEALQ+ +RMKS  CK
Sbjct: 258 VVTYTSVMSALAKSEEYEEALQIAQRMKSVGCK 290


>ref|XP_002315631.1| predicted protein [Populus trichocarpa] gi|222864671|gb|EEF01802.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  366 bits (940), Expect = 4e-99
 Identities = 174/273 (63%), Positives = 214/273 (78%)
 Frame = -2

Query: 821 VEVLASKVRVGNNEEEVIQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 642
           V ++A+K RVG++ +E++ +L  +Q C +I++S+ LVD LL RF+DDWKSALGVF+WAG 
Sbjct: 7   VNLVAAKARVGSSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSALGVFRWAGL 66

Query: 641 RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 462
           R GYKH P+AY   VDILGK K++ +M  LL+EM   + VTL  + K MRR  GAGKWED
Sbjct: 67  RPGYKHRPEAYDMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWED 126

Query: 461 AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 282
           A+++FD+LGTFGLEKN E+MNLLLDTLCKE +V  AR +FLELK +I PNAHTFNIFIHG
Sbjct: 127 AVRMFDELGTFGLEKNAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHG 186

Query: 281 WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 102
           WCK N +DEA+WTLQEMKGH   PC+I+YSTI+  YC Q NF KVYELLDEM AQGC PN
Sbjct: 187 WCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPN 246

Query: 101 VVTYTTLMYSLAKCDEYEEALQVYERMKSDKCK 3
           VVTYTT++  LAK    EEALQ+ +RMKS  CK
Sbjct: 247 VVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCK 279


>ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  357 bits (917), Expect = 2e-96
 Identities = 168/269 (62%), Positives = 218/269 (81%)
 Frame = -2

Query: 821 VEVLASKVRVGNNEEEVIQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 642
           ++ + +KV+VG++E+EV Q+LL+D  C SIQLS  LV  LL RF+DDWKSALGVF+WA +
Sbjct: 40  IDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAES 99

Query: 641 RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 462
             G+KHTP  Y   +D LGK K++ +M  +L+EM E   VTL+ +AK MRR  GAG+WE+
Sbjct: 100 LSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWEN 159

Query: 461 AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 282
           A++IFDDL T+GLEKNTE+MN+LLDTLCKEK+V  AR ++LELK +I+PNA+TFN+FIHG
Sbjct: 160 AVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHG 219

Query: 281 WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 102
           WCK N+IDEA+WTL+EMKG+G  PC+I+YSTI+  YC++ NF KVYELLDEM AQGC  N
Sbjct: 220 WCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 279

Query: 101 VVTYTTLMYSLAKCDEYEEALQVYERMKS 15
           V+TYTT+M SL K +E+EEALQ+ ERMKS
Sbjct: 280 VITYTTIMCSLTKSEEFEEALQIAERMKS 308



 Score = 70.5 bits (171), Expect = 6e-10
 Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 11/222 (4%)
 Frame = -2

Query: 635 GYKHTPQAYAKTVDILGKAKK--ISRMLLLLDEM----CEGNRVTLEIIAKVMRRLCGAG 474
           GY H P   + +  IL    +   +++  LLDEM    C  N +T   I   M  L  + 
Sbjct: 238 GYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTI---MCSLTKSE 294

Query: 473 KWEDAIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVF-LEL-KRYISPNAHTF 300
           ++E+A++I + + + G E +T   N L+ TL +  +V  A  VF +E+  + + PN  T+
Sbjct: 295 EFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTY 354

Query: 299 NIFIHGWCKYNRIDEANWTLQEM-KGHGCTPCIITYSTIVQA-YCNQFNFRKVYELLDEM 126
           N  I  +C+  R ++A   L+EM K   C P + TY  ++++ +        +  LLDEM
Sbjct: 355 NSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEM 414

Query: 125 -RAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCK 3
                 S ++ TY+ L++ L + ++ + A Q++E+M S   K
Sbjct: 415 INKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIK 456


>ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  357 bits (917), Expect = 2e-96
 Identities = 168/269 (62%), Positives = 218/269 (81%)
 Frame = -2

Query: 821 VEVLASKVRVGNNEEEVIQALLRDQFCCSIQLSSGLVDTLLFRFEDDWKSALGVFKWAGT 642
           ++ + +KV+VG++E+EV Q+LL+D  C SIQLS  LV  LL RF+DDWKSALGVF+WA +
Sbjct: 71  IDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAES 130

Query: 641 RVGYKHTPQAYAKTVDILGKAKKISRMLLLLDEMCEGNRVTLEIIAKVMRRLCGAGKWED 462
             G+KHTP  Y   +D LGK K++ +M  +L+EM E   VTL+ +AK MRR  GAG+WE+
Sbjct: 131 LSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWEN 190

Query: 461 AIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVFLELKRYISPNAHTFNIFIHG 282
           A++IFDDL T+GLEKNTE+MN+LLDTLCKEK+V  AR ++LELK +I+PNA+TFN+FIHG
Sbjct: 191 AVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHG 250

Query: 281 WCKYNRIDEANWTLQEMKGHGCTPCIITYSTIVQAYCNQFNFRKVYELLDEMRAQGCSPN 102
           WCK N+IDEA+WTL+EMKG+G  PC+I+YSTI+  YC++ NF KVYELLDEM AQGC  N
Sbjct: 251 WCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 310

Query: 101 VVTYTTLMYSLAKCDEYEEALQVYERMKS 15
           V+TYTT+M SL K +E+EEALQ+ ERMKS
Sbjct: 311 VITYTTIMCSLTKSEEFEEALQIAERMKS 339



 Score = 70.5 bits (171), Expect = 6e-10
 Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 11/222 (4%)
 Frame = -2

Query: 635 GYKHTPQAYAKTVDILGKAKK--ISRMLLLLDEM----CEGNRVTLEIIAKVMRRLCGAG 474
           GY H P   + +  IL    +   +++  LLDEM    C  N +T   I   M  L  + 
Sbjct: 269 GYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTI---MCSLTKSE 325

Query: 473 KWEDAIKIFDDLGTFGLEKNTETMNLLLDTLCKEKRVHLARDVF-LEL-KRYISPNAHTF 300
           ++E+A++I + + + G E +T   N L+ TL +  +V  A  VF +E+  + + PN  T+
Sbjct: 326 EFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTY 385

Query: 299 NIFIHGWCKYNRIDEANWTLQEM-KGHGCTPCIITYSTIVQA-YCNQFNFRKVYELLDEM 126
           N  I  +C+  R ++A   L+EM K   C P + TY  ++++ +        +  LLDEM
Sbjct: 386 NSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEM 445

Query: 125 -RAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCK 3
                 S ++ TY+ L++ L + ++ + A Q++E+M S   K
Sbjct: 446 INKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIK 487