BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006028
         (1754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   506   e-140
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   491   e-136
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   488   e-135
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              478   e-132
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   472   e-130

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  506 bits (1302), Expect = e-140
 Identities = 265/398 (66%), Positives = 302/398 (75%), Gaps = 4/398 (1%)
 Frame = +2

Query: 38   ATTLPAALSSSLHVILKPSLTSKPIFKTKAFPLLRSI----TSKTDFNITFAXXXXXXXX 205
            A    +A  SS H + +PSL  +     +  P+  SI    T+  +FNI+FA        
Sbjct: 11   AVAAASAAFSSFH-LSRPSLARRHF---RTIPVRSSISPPSTTSAEFNISFAPKSKNPKP 66

Query: 206  XXXXXXXXXXXXXXXXWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXX 385
                            WIVR E+G L++QSTPP + L DMA A                 
Sbjct: 67   QSETLLIP--------WIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTAR 118

Query: 386  XXPVLTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVTVNGSV 565
               V   EPKYSKAARRFYNENFRDPPQRLSK+LAAAGVASRR+SEELIF G+VTVNGSV
Sbjct: 119  AVAV---EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSV 175

Query: 566  CNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDDYL 745
            CNTPQTRVDP RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKE+KSV+ L DDYL
Sbjct: 176  CNTPQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYL 235

Query: 746  KSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDGTV 925
            KSWN+ NPG PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG V
Sbjct: 236  KSWNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVV 295

Query: 926  NKRHLTSISEGTIIEGVHCRPDSVELLRQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLM 1105
            NKRHL +ISEGT+IEGVHC PDSVELL  QP++S+PRLR+VVHEGRNHEVRELVK+AGL 
Sbjct: 296  NKRHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQ 355

Query: 1106 LHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGKT 1219
            +HSLKR+RIGGFRLPSDLG GKHVELKQGDLK+LG K+
Sbjct: 356  IHSLKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  491 bits (1264), Expect = e-136
 Identities = 267/402 (66%), Positives = 296/402 (73%), Gaps = 14/402 (3%)
 Frame = +2

Query: 53   AALSSSLHV------ILKPSLT--SKPIFKTKAFPLLRSITSKTDFNITFAXXXXXXXXX 208
            AA  S+LH+        KPSL+  +K I  T+       IT+  +FNITFA         
Sbjct: 2    AASLSTLHLHHQLTFFRKPSLSLLNKSIRPTR-------ITASLEFNITFAPPKPKPKLP 54

Query: 209  XXXXXXXXXXXXXXX-----WIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXX 373
                                WIVRGEDG LKLQS PP +L+H +A+A             
Sbjct: 55   ANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKK 114

Query: 374  XXXXXXPV-LTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVT 550
                     L +EP  SKAARRFYNENFRD  QRLSK+LAAAGVASRRSSE LIF GKVT
Sbjct: 115  ESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVT 174

Query: 551  VNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSL 730
            VNGSVCNTPQTRVDPGRD IYVNGNR+ KKLPPK+Y+ALNKPKGYICS GEKE+KSVM L
Sbjct: 175  VNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCL 234

Query: 731  LDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAA 910
            LDDY +SW++ NPG PKPRLFTVGRLDVATTGLII+TNDGDFAQ+I+HPSS LSKEYIA 
Sbjct: 235  LDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIAT 294

Query: 911  VDGTVNKRHLTSISEGTIIEGVHCRPDSVELLRQQPDMSRPRLRIVVHEGRNHEVRELVK 1090
            VDG V+KRHL ++SEGT+IEGV C PDSVELL QQPD  RPRLRIVVHEGRNHEVRELVK
Sbjct: 295  VDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVK 354

Query: 1091 NAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGK 1216
            NAGL +HSLKRVRIGGFRLPSDLGLGKH ELKQ DLK+LG K
Sbjct: 355  NAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWK 396


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  488 bits (1255), Expect = e-135
 Identities = 262/403 (65%), Positives = 299/403 (74%), Gaps = 17/403 (4%)
 Frame = +2

Query: 62   SSSLHVILKPSLTSKPIFKTKAFPLLR-------------SITSKTDFNITFAXXXXXXX 202
            SSSL ++ KPSL   PI   +A P +              S +S  +FNITFA       
Sbjct: 6    SSSLLLLSKPSLIFNPI---RAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPKPK 62

Query: 203  XXXXXXXXXXXXXXXXX----WIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXX 370
                                 WIVRGEDG LKLQS PPT+ LH ++              
Sbjct: 63   SEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVSAG 122

Query: 371  XXXXXXXPVLTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVT 550
                     +T  PK+SKAARRFYNEN R+  QRLSK+LAAAGVASRRSSEELIFGG+VT
Sbjct: 123  KP-------ITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVT 175

Query: 551  VNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSL 730
            VNGSVCNTPQTRVDP RDIIYVNGNR+ KKLPPKVYLALNKPKGYICSSG+KE+KSV+SL
Sbjct: 176  VNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISL 235

Query: 731  LDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAA 910
             DDYLKSW++  PG PKPRLFTVGRLDVATTGLII+TNDGDFAQ ISHPSSGLSKEYIAA
Sbjct: 236  FDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAA 295

Query: 911  VDGTVNKRHLTSISEGTIIEGVHCRPDSVELLRQQPDMSRPRLRIVVHEGRNHEVRELVK 1090
            +DGTV+K++L +ISEGTII+GVHC PDSVELL +QPD+S+ RLRIVVHEGRNHEVRELVK
Sbjct: 296  IDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVK 355

Query: 1091 NAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGKT 1219
             AGL ++SLKRVRIGGFRLPSDLGLG + ELKQ +LK++G K+
Sbjct: 356  AAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  478 bits (1230), Expect = e-132
 Identities = 230/271 (84%), Positives = 254/271 (93%)
 Frame = +2

Query: 407  EPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTR 586
            EPKYSKAARRFYNENFRDPPQRLSK+LAAAGVASRR+SEELIF G+VTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 587  VDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDDYLKSWNRIN 766
            VDP RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKE+KSV+ L DDYLKSWN+ N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 767  PGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDGTVNKRHLTS 946
            PG PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG VNKRHL +
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 947  ISEGTIIEGVHCRPDSVELLRQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLMLHSLKRV 1126
            ISEGT+IEGVHC PDSVELL  QP++S+PRLR+VVHEGRNHEVRELVK+AGL +HSLKR+
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 1127 RIGGFRLPSDLGLGKHVELKQGDLKSLGGKT 1219
            RIGGFRLPSDLG GKHVELKQGDLK+LG K+
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  472 bits (1214), Expect = e-130
 Identities = 240/339 (70%), Positives = 270/339 (79%), Gaps = 18/339 (5%)
 Frame = +2

Query: 254  WIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXXXXPVLTS--------- 406
            WIVRG+DG LKLQS PP +L+H++A                     P  TS         
Sbjct: 76   WIVRGDDGTLKLQSQPPARLIHNLA---IDATTQNPKKKDKPKKKQPQATSSSASATASA 132

Query: 407  ---------EPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVTVNG 559
                     +PK SKAARRFYNENF++PPQRLSK+LAAAGVASRR+SEELIF GKVTVNG
Sbjct: 133  SSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNG 192

Query: 560  SVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDD 739
             +CNTPQTRVDP RDIIYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KSV+SL D+
Sbjct: 193  ILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDE 252

Query: 740  YLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDG 919
            YL SW++ NPGTPKPRLFTVGRLDVATTGLI++TNDGDFAQ++SHPSS L KEYI  V G
Sbjct: 253  YLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVG 312

Query: 920  TVNKRHLTSISEGTIIEGVHCRPDSVELLRQQPDMSRPRLRIVVHEGRNHEVRELVKNAG 1099
             ++KRHL +ISEGTI+EGVHC PDSVEL+ +Q D+ R RLRIVVHEGRNHEVRELVKNAG
Sbjct: 313  DIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAG 372

Query: 1100 LMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGK 1216
            L +HSLKRVRIGGFRLPSDLGLGKHVELKQ +LK++G K
Sbjct: 373  LEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWK 411