BLASTX nr result

ID: Coptis24_contig00006027 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006027
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK48250.1| unknown [Lotus japonicus]                              130   1e-28
ref|XP_003517627.1| PREDICTED: vacuolar protein sorting-associat...   130   1e-28
ref|XP_002283066.1| PREDICTED: vacuolar protein sorting-associat...   129   3e-28
gb|AFK45318.1| unknown [Lotus japonicus]                              128   4e-28
ref|XP_002514179.1| Charged multivesicular body protein 4b, puta...   128   6e-28

>gb|AFK48250.1| unknown [Lotus japonicus]
          Length = 218

 Score =  130 bits (327), Expect = 1e-28
 Identities = 79/141 (56%), Positives = 80/141 (56%)
 Frame = +3

Query: 51  MFTRIFGKPKQETNALATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRXXXXXXXX 230
           MFTRIFGKPKQE NALATLD                             FT+        
Sbjct: 1   MFTRIFGKPKQEANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRAAI 60

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 410
                                  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE
Sbjct: 61  Q----------------------CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 98

Query: 411 TVDALRTGASAMKAMQKATNI 473
           TVDALRTGASAMKAMQKATNI
Sbjct: 99  TVDALRTGASAMKAMQKATNI 119


>ref|XP_003517627.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog
           2-like [Glycine max]
          Length = 329

 Score =  130 bits (326), Expect = 1e-28
 Identities = 78/142 (54%), Positives = 82/142 (57%)
 Frame = +3

Query: 48  IMFTRIFGKPKQETNALATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRXXXXXXX 227
           IMF+R+FGKPKQETNA+ATLD                             FTR       
Sbjct: 111 IMFSRMFGKPKQETNAVATLDKLNETLEMLEKKEKVLLKKVAAEVEKAKEFTRGKNKRAA 170

Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATT 407
                                   CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATT
Sbjct: 171 IQ----------------------CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATT 208

Query: 408 ETVDALRTGASAMKAMQKATNI 473
           ETVDALRTGA+AMKAMQKATNI
Sbjct: 209 ETVDALRTGAAAMKAMQKATNI 230


>ref|XP_002283066.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2
           [Vitis vinifera] gi|147840660|emb|CAN61998.1|
           hypothetical protein VITISV_007873 [Vitis vinifera]
           gi|297738716|emb|CBI27961.3| unnamed protein product
           [Vitis vinifera]
          Length = 218

 Score =  129 bits (323), Expect = 3e-28
 Identities = 78/141 (55%), Positives = 79/141 (56%)
 Frame = +3

Query: 51  MFTRIFGKPKQETNALATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRXXXXXXXX 230
           MFTRIFGKPKQE NAL TLD                             FTR        
Sbjct: 1   MFTRIFGKPKQEANALTTLDKLNETLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAI 60

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 410
                                  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE
Sbjct: 61  Q----------------------CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 98

Query: 411 TVDALRTGASAMKAMQKATNI 473
           TVDALRTGA+AMKAMQKATNI
Sbjct: 99  TVDALRTGAAAMKAMQKATNI 119


>gb|AFK45318.1| unknown [Lotus japonicus]
          Length = 218

 Score =  128 bits (322), Expect = 4e-28
 Identities = 78/141 (55%), Positives = 78/141 (55%)
 Frame = +3

Query: 51  MFTRIFGKPKQETNALATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRXXXXXXXX 230
           MFTRIFGKPKQE NAL T D                             FTR        
Sbjct: 1   MFTRIFGKPKQEANALTTFDKLNETLEMLEKKEKVLLKKASAEVEKAKEFTRAKNKRAAI 60

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 410
                                  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE
Sbjct: 61  Q----------------------CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 98

Query: 411 TVDALRTGASAMKAMQKATNI 473
           TVDALRTGASAMKAMQKATNI
Sbjct: 99  TVDALRTGASAMKAMQKATNI 119


>ref|XP_002514179.1| Charged multivesicular body protein 4b, putative [Ricinus communis]
           gi|223546635|gb|EEF48133.1| Charged multivesicular body
           protein 4b, putative [Ricinus communis]
          Length = 218

 Score =  128 bits (321), Expect = 6e-28
 Identities = 77/141 (54%), Positives = 79/141 (56%)
 Frame = +3

Query: 51  MFTRIFGKPKQETNALATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRXXXXXXXX 230
           MF R+FGKPKQETNAL TLD                             FTR        
Sbjct: 1   MFNRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLSKKAIAEVERAKEFTRTKNKRAAI 60

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 410
                                  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE
Sbjct: 61  Q----------------------CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTE 98

Query: 411 TVDALRTGASAMKAMQKATNI 473
           TVDALRTGA+AMKAMQKATNI
Sbjct: 99  TVDALRTGAAAMKAMQKATNI 119


Top