BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006019
         (1077 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW90599.1| photosystem I subunit III precursor (chloroplast)...   317   3e-84
gb|AAP03872.1| putative photosystem I subunit III precursor [Nic...   313   6e-83
gb|AFK41712.1| unknown [Medicago truncatula]                          312   8e-83
gb|ACJ83279.1| unknown [Medicago truncatula]                          309   7e-82
emb|CAN76343.1| hypothetical protein VITISV_039382 [Vitis vinifera]   304   2e-80

>gb|AFW90599.1| photosystem I subunit III precursor (chloroplast) [Solanum
           tuberosum]
          Length = 228

 Score =  317 bits (812), Expect = 3e-84
 Identities = 160/228 (70%), Positives = 177/228 (77%), Gaps = 4/228 (1%)
 Frame = -2

Query: 887 MSLTIPTTFSKALSNPKLNNQFTPKSRTQIVCCSSNEQTQSPSKTXXXXXXXXXXXXXXX 708
           MSLTIPT  SK +S  K  +QFT K RT  + CSSN+   S S                 
Sbjct: 1   MSLTIPTNLSKPISTSKFGSQFTTKPRTSAIVCSSNQTPVSNSTEESSSSLKAFSAALAL 60

Query: 707 XXXXXXXAV----ADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATI 540
                   V    ADI+GLTPCK+SKQFAKREKQ +KKLESSLKLY+PDSAPALAI ATI
Sbjct: 61  SSILLSAPVLPASADISGLTPCKDSKQFAKREKQQIKKLESSLKLYSPDSAPALAINATI 120

Query: 539 EKTKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 360
           EKTKRRFDNYGKQGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 359 AIRDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 216
           A+RD+KKPT KEIIIDVPLA+RL++RGFIWPVAAYR  + G+LIDP+V
Sbjct: 181 AVRDDKKPTMKEIIIDVPLANRLVWRGFIWPVAAYREYLNGDLIDPNV 228


>gb|AAP03872.1| putative photosystem I subunit III precursor [Nicotiana tabacum]
          Length = 222

 Score =  313 bits (801), Expect = 6e-83
 Identities = 158/223 (70%), Positives = 174/223 (78%)
 Frame = -2

Query: 887 MSLTIPTTFSKALSNPKLNNQFTPKSRTQIVCCSSNEQTQSPSKTXXXXXXXXXXXXXXX 708
           MSLTIPT  SK +S   LN+QFT K R   + CSS+      S                 
Sbjct: 1   MSLTIPTNLSKPIST--LNSQFTKKPRFATIVCSSSSSCDEQSSCNLKAFSAALALSSVL 58

Query: 707 XXXXXXXAVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEKTK 528
                  A ADI+GLTPCKESKQFAKREKQ +KKLESSLKLYAPDSAPALAIQAT+EKTK
Sbjct: 59  LSVPVLPASADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIQATVEKTK 118

Query: 527 RRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 348
           RRFDNYGKQGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIA+RD
Sbjct: 119 RRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAVRD 178

Query: 347 EKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPS 219
           +KKPT KEIIIDVPLA++L++RGF WPVAAYR  + GELIDP+
Sbjct: 179 DKKPTMKEIIIDVPLANKLIWRGFSWPVAAYREYLNGELIDPN 221


>gb|AFK41712.1| unknown [Medicago truncatula]
          Length = 224

 Score =  312 bits (800), Expect = 8e-83
 Identities = 162/226 (71%), Positives = 177/226 (78%), Gaps = 2/226 (0%)
 Frame = -2

Query: 887 MSLTIPTTFSKALSN--PKLNNQFTPKSRTQIVCCSSNEQTQSPSKTXXXXXXXXXXXXX 714
           MSLTIPT  SK  S   PKL  +  PK  T I+ CS+N++  +                 
Sbjct: 1   MSLTIPTNLSKPTSTLRPKLPQK--PKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALS 58

Query: 713 XXXXXXXXXAVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEK 534
                    AVADI+GLTPC+ESKQFAKREKQS+KKLESSLKLYAPDSAPALAI+AT+EK
Sbjct: 59  SILISSPLPAVADISGLTPCRESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKATVEK 118

Query: 533 TKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 354
           TKRRFDNYGKQGLLCGADGLPHLIV+GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI
Sbjct: 119 TKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 178

Query: 353 RDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 216
           RDEKKPT+KEIIIDVPLASRL+FRGF WP+AAYR LV GELI   V
Sbjct: 179 RDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELVNGELIAKDV 224


>gb|ACJ83279.1| unknown [Medicago truncatula]
          Length = 224

 Score =  309 bits (792), Expect = 7e-82
 Identities = 161/226 (71%), Positives = 176/226 (77%), Gaps = 2/226 (0%)
 Frame = -2

Query: 887 MSLTIPTTFSKALSN--PKLNNQFTPKSRTQIVCCSSNEQTQSPSKTXXXXXXXXXXXXX 714
           MSLTIPT  SK  S   PKL  +  PK  T I+ CS+N++  +                 
Sbjct: 1   MSLTIPTNLSKPTSTLRPKLPQK--PKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALS 58

Query: 713 XXXXXXXXXAVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEK 534
                    AVADI+GLTPC+ESKQFAKREKQS+KKLESSLKLYAPDSAPALAI+AT+EK
Sbjct: 59  SILISSPLPAVADISGLTPCRESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKATVEK 118

Query: 533 TKRRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 354
           TKRRFDNYGKQGLLCGADGLPHLIV+GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI
Sbjct: 119 TKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAI 178

Query: 353 RDEKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 216
           RDEKKPT+KEIIIDV LASRL+FRGF WP+AAYR LV GELI   V
Sbjct: 179 RDEKKPTQKEIIIDVTLASRLVFRGFSWPIAAYRELVNGELIAKDV 224


>emb|CAN76343.1| hypothetical protein VITISV_039382 [Vitis vinifera]
          Length = 221

 Score =  304 bits (779), Expect = 2e-80
 Identities = 160/224 (71%), Positives = 172/224 (76%)
 Frame = -2

Query: 887 MSLTIPTTFSKALSNPKLNNQFTPKSRTQIVCCSSNEQTQSPSKTXXXXXXXXXXXXXXX 708
           MSLTIPT  SK L  P+L++    K+R  IVC +S E    P+                 
Sbjct: 1   MSLTIPTNLSKPLK-PRLSSPSFQKARPMIVCSASTEP--QPTNKSPLQAFSAALALSSI 57

Query: 707 XXXXXXXAVADIAGLTPCKESKQFAKREKQSVKKLESSLKLYAPDSAPALAIQATIEKTK 528
                  A ADIAGLTPCKESKQFAKREKQ++KKLESSLKLYAPDSAPALAI ATIEKTK
Sbjct: 58  ILAAPVPAYADIAGLTPCKESKQFAKREKQALKKLESSLKLYAPDSAPALAINATIEKTK 117

Query: 527 RRFDNYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 348
           RRF NY  QGLLCG+DGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD
Sbjct: 118 RRFTNYANQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRD 177

Query: 347 EKKPTEKEIIIDVPLASRLLFRGFIWPVAAYRALVTGELIDPSV 216
           EKKPT+KEIIIDVPLASRL+FRGFIWPVAAYR  V G+LI   V
Sbjct: 178 EKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLIAKDV 221