BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006009
         (1365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003554645.1| PREDICTED: ATP-dependent Clp protease proteo...   485   e-134
ref|NP_001241928.1| uncharacterized protein LOC100809485 [Glycin...   483   e-134
ref|XP_002512428.1| ATP-dependent Clp protease proteolytic subun...   483   e-134
ref|XP_002279451.1| PREDICTED: ATP-dependent Clp protease proteo...   482   e-133
ref|XP_002892483.1| ClpP protease complex subunit ClpR3 [Arabido...   465   e-128

>ref|XP_003554645.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related
            protein 3, chloroplastic-like [Glycine max]
          Length = 327

 Score =  485 bits (1248), Expect = e-134
 Identities = 243/317 (76%), Positives = 278/317 (87%), Gaps = 7/317 (2%)
 Frame = +2

Query: 83   MASCLQVPIASSNYYPNKTIFR-RSIKCAAA----KIPMPPLNPKDPFLSRLASVASSNP 247
            MA+ L+V + +S   P  T  R R++K + +    KIPMPPLNPKDPFLS+LASVA+S+P
Sbjct: 9    MAAYLRVSMPTSPQSPTTTRRRCRNLKTSCSVNRPKIPMPPLNPKDPFLSKLASVAASSP 68

Query: 248  D--LKPSSNSDTPPYLDLFDSPQLMASPAQAERSVSYNEHRPRKPPPDLPSLLLHGRIVY 421
            +  L    NSDT PYLD+FDSP+LMA+PAQ ERSVSYNEHRPR+PPPDLPSLLLHGRIVY
Sbjct: 69   ETLLNTPKNSDTLPYLDIFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVY 128

Query: 422  IGMPLVPAVTELVIAELLYLQYMDPKESIYLYISSTGTTRDDGETVGMESEGFAIYDAMM 601
            IGMPLVPAVTELV+AEL+YLQYMDPKE IY+YI+STGTTRDDGETVGME+EGFAIYDAMM
Sbjct: 129  IGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDAMM 188

Query: 602  QLKNDIQTVGVGAAVGQACLLLAAGKKGRRFMMPHAKAMIQQPRLPSSGLMPASDVLIRA 781
            QLKN+I TV VG+A+GQACLLL+AG  G+RFMMPHAKAMIQQPR+PSSGLMPASDVLIRA
Sbjct: 189  QLKNEIHTVAVGSAIGQACLLLSAGSPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRA 248

Query: 782  KEVVTNRDALVKLLARHTGNSFEKVATVMKRPYYMDATQAKNFGVIDKILWRGQEKIMAD 961
            KEV+ NRD LVKLLA+HTGNS E VA VMKRPYYMDAT+AK FGVID+ILWRGQEK+MAD
Sbjct: 249  KEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRILWRGQEKVMAD 308

Query: 962  AASPEEWDKKAGIKVAD 1012
             ASP++WDK AGIK+ D
Sbjct: 309  VASPDDWDKGAGIKIVD 325


>ref|NP_001241928.1| uncharacterized protein LOC100809485 [Glycine max]
            gi|255635968|gb|ACU18330.1| unknown [Glycine max]
          Length = 324

 Score =  483 bits (1242), Expect = e-134
 Identities = 241/319 (75%), Positives = 280/319 (87%), Gaps = 9/319 (2%)
 Frame = +2

Query: 83   MASCLQVPIASSNYYPNKTIFR---RSIKCA----AAKIPMPPLNPKDPFLSRLASVASS 241
            MA+ L+VP ++     + T  R   R++K +    AAKIPMPPLNPKDPFLS+LAS+A+S
Sbjct: 4    MAAYLRVPTSTPITPQSPTATRTKCRNLKTSCSVNAAKIPMPPLNPKDPFLSKLASIAAS 63

Query: 242  NPD--LKPSSNSDTPPYLDLFDSPQLMASPAQAERSVSYNEHRPRKPPPDLPSLLLHGRI 415
            +PD  L    NSDTPP+LD+FDSP+LMA+PAQ ERSVSYNEHRPR+PPPDLPSLLLHGRI
Sbjct: 64   SPDTLLNTPKNSDTPPFLDIFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRI 123

Query: 416  VYIGMPLVPAVTELVIAELLYLQYMDPKESIYLYISSTGTTRDDGETVGMESEGFAIYDA 595
            VYIGMPLVPAVTELV+AEL+ LQYMDPKE+I++YI+STGTTRDDGETVGME+EGFAIYDA
Sbjct: 124  VYIGMPLVPAVTELVVAELMCLQYMDPKETIFIYINSTGTTRDDGETVGMETEGFAIYDA 183

Query: 596  MMQLKNDIQTVGVGAAVGQACLLLAAGKKGRRFMMPHAKAMIQQPRLPSSGLMPASDVLI 775
            MMQLKN+I TV VG+A+GQACLLL+AG  G+RFMMPHAKAMIQQPR+PSSGLMPASDVLI
Sbjct: 184  MMQLKNEIHTVAVGSAIGQACLLLSAGTPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLI 243

Query: 776  RAKEVVTNRDALVKLLARHTGNSFEKVATVMKRPYYMDATQAKNFGVIDKILWRGQEKIM 955
            RAKEV+ NRD LVKLLA+HTGNS E VA VMKRPYYMDAT+AK FGVID+ILWRG+EK+M
Sbjct: 244  RAKEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRILWRGREKVM 303

Query: 956  ADAASPEEWDKKAGIKVAD 1012
            AD ASP++WDK AGIK+ D
Sbjct: 304  ADVASPDDWDKGAGIKIVD 322


>ref|XP_002512428.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
            communis] gi|223548389|gb|EEF49880.1| ATP-dependent Clp
            protease proteolytic subunit, putative [Ricinus communis]
          Length = 325

 Score =  483 bits (1242), Expect = e-134
 Identities = 241/323 (74%), Positives = 277/323 (85%), Gaps = 13/323 (4%)
 Frame = +2

Query: 83   MASCLQ--------VPIASSNYYPNKTIFRRS---IKCAAAKIPMPPLNPKDPFLSRLAS 229
            MA+CL+        +P +SS+   N    +R    I C+++KIPMPP+NPKDPFLS+LAS
Sbjct: 1    MATCLRALPITTCSIPSSSSSASSNSQSLKRRNLRINCSSSKIPMPPINPKDPFLSKLAS 60

Query: 230  VASSNPD--LKPSSNSDTPPYLDLFDSPQLMASPAQAERSVSYNEHRPRKPPPDLPSLLL 403
            +A+++PD  L     SDTPP+LDLFDSP+LMA+PAQ ERSVSYNEHRPRKPPPDLPSLLL
Sbjct: 61   IAANSPDSLLDRPITSDTPPFLDLFDSPKLMATPAQVERSVSYNEHRPRKPPPDLPSLLL 120

Query: 404  HGRIVYIGMPLVPAVTELVIAELLYLQYMDPKESIYLYISSTGTTRDDGETVGMESEGFA 583
            HGRIVYIGMPLVPAVTELV+AEL+YLQ+MDPKE IYLYI+STGTTRDDGETVGME+EGFA
Sbjct: 121  HGRIVYIGMPLVPAVTELVVAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGMETEGFA 180

Query: 584  IYDAMMQLKNDIQTVGVGAAVGQACLLLAAGKKGRRFMMPHAKAMIQQPRLPSSGLMPAS 763
            IYD+MMQLKN+I TV VGAA+GQACLLLAAG KG+RFMMPHAKAMIQQP++PSSGLM AS
Sbjct: 181  IYDSMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPKVPSSGLMAAS 240

Query: 764  DVLIRAKEVVTNRDALVKLLARHTGNSFEKVATVMKRPYYMDATQAKNFGVIDKILWRGQ 943
            DVLIRAKE VTNRD LV+LLA+HT NS E VA  MKRP+YMD+ +AK FGVIDKILWRGQ
Sbjct: 241  DVLIRAKEAVTNRDTLVELLAKHTENSVETVANAMKRPFYMDSRRAKEFGVIDKILWRGQ 300

Query: 944  EKIMADAASPEEWDKKAGIKVAD 1012
            EKIMAD  +PEEWDK AGIK+AD
Sbjct: 301  EKIMADVVTPEEWDKMAGIKIAD 323


>ref|XP_002279451.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related
            protein 3, chloroplastic [Vitis vinifera]
            gi|296089701|emb|CBI39520.3| unnamed protein product
            [Vitis vinifera]
          Length = 322

 Score =  482 bits (1240), Expect = e-133
 Identities = 247/322 (76%), Positives = 284/322 (88%), Gaps = 10/322 (3%)
 Frame = +2

Query: 83   MASCLQVPIASS---NYYPNKT--IFRR--SIK-CAAAKIPMPPLNPKDPFLSRLASVAS 238
            MA+ LQ+P+ASS   +  P+ T  IF+   S+K   +AKIPM P+NPKDPFLS+LASVA+
Sbjct: 1    MAASLQLPMASSIPSSSSPSTTRPIFKTHCSMKPTCSAKIPMSPINPKDPFLSKLASVAA 60

Query: 239  SNPD--LKPSSNSDTPPYLDLFDSPQLMASPAQAERSVSYNEHRPRKPPPDLPSLLLHGR 412
            ++P+  L+  S SD+ P+LDLFDSP+LMA+PAQ ERSVSYNEHRPR+PPPDLPSLLLHGR
Sbjct: 61   TSPERLLQRPSGSDSLPFLDLFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGR 120

Query: 413  IVYIGMPLVPAVTELVIAELLYLQYMDPKESIYLYISSTGTTRDDGETVGMESEGFAIYD 592
            IVYIGMPLVPAVTELVIAEL+YLQ+MDPKE +Y+YI+ TGTTRDDGE VGME+EGFAIYD
Sbjct: 121  IVYIGMPLVPAVTELVIAELMYLQWMDPKEPVYVYINCTGTTRDDGERVGMETEGFAIYD 180

Query: 593  AMMQLKNDIQTVGVGAAVGQACLLLAAGKKGRRFMMPHAKAMIQQPRLPSSGLMPASDVL 772
            AMMQLKN+I TV VGAA+GQACLLLAAG KG+RFMMPHAKAMIQQPR+PSSGLMPASDVL
Sbjct: 181  AMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVL 240

Query: 773  IRAKEVVTNRDALVKLLARHTGNSFEKVATVMKRPYYMDATQAKNFGVIDKILWRGQEKI 952
            IRAKEV+TNRD LVKLLA+HTGNS E V+TVM+RPYYMD+T+AK FGVIDKILWRGQEKI
Sbjct: 241  IRAKEVITNRDTLVKLLAKHTGNSEETVSTVMRRPYYMDSTKAKEFGVIDKILWRGQEKI 300

Query: 953  MADAASPEEWDKKAGIKVADAI 1018
            MAD  SPEEWDK AGI+V D I
Sbjct: 301  MADVLSPEEWDKNAGIQVVDGI 322


>ref|XP_002892483.1| ClpP protease complex subunit ClpR3 [Arabidopsis lyrata subsp.
            lyrata] gi|297338325|gb|EFH68742.1| ClpP protease complex
            subunit ClpR3 [Arabidopsis lyrata subsp. lyrata]
          Length = 332

 Score =  465 bits (1197), Expect = e-128
 Identities = 236/332 (71%), Positives = 277/332 (83%), Gaps = 20/332 (6%)
 Frame = +2

Query: 83   MASCLQVPI-----ASSNYYPNKTIF-----RRSIKC--------AAAKIPMPPLNPKDP 208
            MASCLQV +      SS++ P+  +      RR++K         A+AKIPMPP+NPKDP
Sbjct: 1    MASCLQVSMNSLLPRSSSFSPHPPLSLNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 209  FLSRLASVASSNPD--LKPSSNSDTPPYLDLFDSPQLMASPAQAERSVSYNEHRPRKPPP 382
            FLS LAS+A+++P+  L    N+D PPYLD+FDSPQLM+SPAQ ERSV+YNEHRPR PPP
Sbjct: 61   FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 383  DLPSLLLHGRIVYIGMPLVPAVTELVIAELLYLQYMDPKESIYLYISSTGTTRDDGETVG 562
            DLPS+LL GRIVYIGMPLVPAVTELV+AEL+YLQ++DPKE IY+YI+STGTTRDDGETVG
Sbjct: 121  DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 563  MESEGFAIYDAMMQLKNDIQTVGVGAAVGQACLLLAAGKKGRRFMMPHAKAMIQQPRLPS 742
            MESEGFAIYD++MQLKN++ TV VGAA+GQACLLL+AG KG RFMMPHAKAMIQQPR+PS
Sbjct: 181  MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGNRFMMPHAKAMIQQPRVPS 240

Query: 743  SGLMPASDVLIRAKEVVTNRDALVKLLARHTGNSFEKVATVMKRPYYMDATQAKNFGVID 922
            SGLMPASDVLIRAKEV+TNRD LV+LLA+HTGNS E VA VM+RPYYMDA +AK FGVID
Sbjct: 241  SGLMPASDVLIRAKEVITNRDILVELLAKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 923  KILWRGQEKIMADAASPEEWDKKAGIKVADAI 1018
            KILWRGQEKI+AD    EE+DK AGIK  + +
Sbjct: 301  KILWRGQEKIIADVVPSEEFDKNAGIKSVERV 332