BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006004
         (631 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS01974.1| putative chloroplastic RNA-binding protein, with ...   276   2e-72
gb|EEC76567.1| hypothetical protein OsI_14395 [Oryza sativa Indi...   275   7e-72
ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containi...   273   1e-71
ref|NP_001236252.1| uncharacterized protein LOC100305755 [Glycin...   272   3e-71
gb|AFK35423.1| unknown [Lotus japonicus]                              271   7e-71

>gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative splicing
            isoforms [Oryza sativa Japonica Group]
            gi|108712189|gb|ABF99984.1| pentatricopeptide, putative,
            expressed [Oryza sativa Japonica Group]
          Length = 884

 Score =  276 bits (707), Expect = 2e-72
 Identities = 130/147 (88%), Positives = 143/147 (97%)
 Frame = +2

Query: 2    KMILAVLFSNSEGNILVERFHGVPSEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVY 181
            KMILAVLFSNS+GNIL+ERFHGVP+EERLHWRSFLVKLGADNLKGAKNEEL VASHKSV 
Sbjct: 737  KMILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVS 796

Query: 182  IVYTVLGDVCIYVVGKDDYDELALSEVIFVITSAVKDVCGKPPTERLFLDKYGRICLCLD 361
            IVYT++GDVC+Y+VGKD+YDELAL+EVIF ITSAVKDVCGKPPTERLFLDKYGRICLCLD
Sbjct: 797  IVYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLD 856

Query: 362  EIVWKGMLENTDKDRIRRLIRLKPPTD 442
            EIVWKG+LENT+KDR+RRLIRLKPP +
Sbjct: 857  EIVWKGLLENTEKDRVRRLIRLKPPVE 883


>gb|EEC76567.1| hypothetical protein OsI_14395 [Oryza sativa Indica Group]
           gi|222626199|gb|EEE60331.1| hypothetical protein
           OsJ_13429 [Oryza sativa Japonica Group]
          Length = 147

 Score =  275 bits (702), Expect = 7e-72
 Identities = 129/146 (88%), Positives = 142/146 (97%)
 Frame = +2

Query: 5   MILAVLFSNSEGNILVERFHGVPSEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYI 184
           MILAVLFSNS+GNIL+ERFHGVP+EERLHWRSFLVKLGADNLKGAKNEEL VASHKSV I
Sbjct: 1   MILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVSI 60

Query: 185 VYTVLGDVCIYVVGKDDYDELALSEVIFVITSAVKDVCGKPPTERLFLDKYGRICLCLDE 364
           VYT++GDVC+Y+VGKD+YDELAL+EVIF ITSAVKDVCGKPPTERLFLDKYGRICLCLDE
Sbjct: 61  VYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLDE 120

Query: 365 IVWKGMLENTDKDRIRRLIRLKPPTD 442
           IVWKG+LENT+KDR+RRLIRLKPP +
Sbjct: 121 IVWKGLLENTEKDRVRRLIRLKPPVE 146


>ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score =  273 bits (699), Expect = 1e-71
 Identities = 127/147 (86%), Positives = 143/147 (97%)
 Frame = +2

Query: 2    KMILAVLFSNSEGNILVERFHGVPSEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVY 181
            KMILAVLF+NS+GNIL+ERFHGVP+EERLHWRSFLVKLG++NLKGAKNEEL VASHKSV 
Sbjct: 728  KMILAVLFANSDGNILIERFHGVPAEERLHWRSFLVKLGSENLKGAKNEELLVASHKSVS 787

Query: 182  IVYTVLGDVCIYVVGKDDYDELALSEVIFVITSAVKDVCGKPPTERLFLDKYGRICLCLD 361
            IVYT++GDVC+Y+VGKD+YDELALSEVIF +TSAVKDVCGKPPTERLFLDKYGRICLCLD
Sbjct: 788  IVYTMIGDVCLYIVGKDEYDELALSEVIFAVTSAVKDVCGKPPTERLFLDKYGRICLCLD 847

Query: 362  EIVWKGMLENTDKDRIRRLIRLKPPTD 442
            EIVWKG+LENT+KDR+RRLIRLKPP +
Sbjct: 848  EIVWKGLLENTEKDRVRRLIRLKPPVE 874


>ref|NP_001236252.1| uncharacterized protein LOC100305755 [Glycine max]
           gi|255626529|gb|ACU13609.1| unknown [Glycine max]
          Length = 147

 Score =  272 bits (696), Expect = 3e-71
 Identities = 131/146 (89%), Positives = 141/146 (96%)
 Frame = +2

Query: 5   MILAVLFSNSEGNILVERFHGVPSEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYI 184
           MILAVLF+N+EGNIL+ERFHGVP+EERLHWRSFLVKLGADNLKG KNEEL VA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 185 VYTVLGDVCIYVVGKDDYDELALSEVIFVITSAVKDVCGKPPTERLFLDKYGRICLCLDE 364
           VYTVLGDV IYVVGKD+YDELALSEVIFVITSAVKDVCGKPP+ERLFLDKYGRICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 365 IVWKGMLENTDKDRIRRLIRLKPPTD 442
           IVW+G LENT+KDRI+RLIRLKPPT+
Sbjct: 121 IVWQGYLENTEKDRIKRLIRLKPPTE 146


>gb|AFK35423.1| unknown [Lotus japonicus]
          Length = 147

 Score =  271 bits (693), Expect = 7e-71
 Identities = 129/146 (88%), Positives = 140/146 (95%)
 Frame = +2

Query: 5   MILAVLFSNSEGNILVERFHGVPSEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYI 184
           MILAVLF+N+EGNIL+ERFHGVP+EERLHWRSFLVKLGADNLKG KNEEL VA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 185 VYTVLGDVCIYVVGKDDYDELALSEVIFVITSAVKDVCGKPPTERLFLDKYGRICLCLDE 364
           VYTVLGDV IYVVGKD+YDELALSEVIFVITSAVKD+CGKPPTER+FLDKYGRICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120

Query: 365 IVWKGMLENTDKDRIRRLIRLKPPTD 442
           IVWKG LENT+ DRI+RL+RLKPPT+
Sbjct: 121 IVWKGYLENTENDRIKRLLRLKPPTE 146