BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005964
         (438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19832.3| unnamed protein product [Vitis vinifera]              110   1e-22
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22
ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...   105   5e-21
ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20

>emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  110 bits (275), Expect = 1e-22
 Identities = 48/55 (87%), Positives = 51/55 (92%)
 Frame = +2

Query: 5   PREATIRVLKNLRICGDCHTAFKFMSKVVEREIVVRDGKRFHHFKSGECSCGDYW 169
           P  AT+RV KNLRICGDCH AFKFMSKVVEREIVVRDGKRFHHFK+GECSCG+YW
Sbjct: 490 PLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 544


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  110 bits (275), Expect = 1e-22
 Identities = 48/55 (87%), Positives = 51/55 (92%)
 Frame = +2

Query: 5   PREATIRVLKNLRICGDCHTAFKFMSKVVEREIVVRDGKRFHHFKSGECSCGDYW 169
           P  AT+RV KNLRICGDCH AFKFMSKVVEREIVVRDGKRFHHFK+GECSCG+YW
Sbjct: 745 PLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799


>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
           predicted protein [Populus trichocarpa]
          Length = 797

 Score =  107 bits (267), Expect = 1e-21
 Identities = 46/55 (83%), Positives = 49/55 (89%)
 Frame = +2

Query: 5   PREATIRVLKNLRICGDCHTAFKFMSKVVEREIVVRDGKRFHHFKSGECSCGDYW 169
           P  AT+RV KNLRICGDCH AFKFMSKVV REIVVRDGKRFHHF+ G+CSCGDYW
Sbjct: 743 PHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  105 bits (261), Expect = 5e-21
 Identities = 46/55 (83%), Positives = 50/55 (90%)
 Frame = +2

Query: 5   PREATIRVLKNLRICGDCHTAFKFMSKVVEREIVVRDGKRFHHFKSGECSCGDYW 169
           P  ATIRV KNLRICGDCH AFK++SKVVEREIVVRD KRFHHFK+GECSCG+YW
Sbjct: 741 PLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795


>ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
           gi|449504088|ref|XP_004162249.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  103 bits (257), Expect = 1e-20
 Identities = 45/55 (81%), Positives = 49/55 (89%)
 Frame = +2

Query: 5   PREATIRVLKNLRICGDCHTAFKFMSKVVEREIVVRDGKRFHHFKSGECSCGDYW 169
           P+ AT+RV KNLRICGDCH A KFMSKVV REIVVRDGKRFHHFK+GECSC +YW
Sbjct: 743 PQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797