BLASTX nr result
ID: Coptis24_contig00005883
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005883
(553 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002532346.1| gamma-tubulin complex component, putative [R... 225 8e-67
ref|XP_002309295.1| tubulin gamma complex-associated protein [Po... 223 2e-66
ref|XP_002275839.1| PREDICTED: gamma-tubulin complex component 3... 219 9e-66
ref|XP_002322735.1| tubulin gamma complex-associated protein [Po... 221 9e-66
ref|XP_004161669.1| PREDICTED: LOW QUALITY PROTEIN: gamma-tubuli... 212 8e-64
>ref|XP_002532346.1| gamma-tubulin complex component, putative [Ricinus communis]
gi|223527963|gb|EEF30048.1| gamma-tubulin complex
component, putative [Ricinus communis]
Length = 855
Score = 225 bits (573), Expect(2) = 8e-67
Identities = 110/146 (75%), Positives = 124/146 (84%)
Frame = +3
Query: 3 GYVVLDSVKVPRATRIMVRKLCELGWLFKKVKGYVSESMDKFPAEEVGTVGQAFCAALQD 182
GYV++D+VKVP ATR+MVRKLCELGWLF+KVKGY+SESMD+FPAE+VGTVGQAFCAALQD
Sbjct: 219 GYVLMDNVKVPTATRLMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQD 278
Query: 183 ELSEYYKLLAVLEAQSMNPIPMVSEVVSSGNYLSLRRLSVWFAEPTVKMRLMAVLVDSCK 362
ELSEYYKLLAVLEAQSMNPIP++SE+ SS NYLSLRRLSVWFAEP VKMRLMAVLVD C+
Sbjct: 279 ELSEYYKLLAVLEAQSMNPIPLISEMASSSNYLSLRRLSVWFAEPMVKMRLMAVLVDKCR 338
Query: 363 VMKXXXXXXXXXXXXXXXDSLVREFM 440
V++ D LV EFM
Sbjct: 339 VLRGGAMAGAIHLHAQHGDPLVHEFM 364
Score = 54.3 bits (129), Expect(2) = 8e-67
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 464 AEPLWRDGYMLHSGMLPSFISQSLAQRILR 553
AE LWR+GY LH+GMLPSFIS SLAQRILR
Sbjct: 404 AESLWREGYRLHAGMLPSFISPSLAQRILR 433
>ref|XP_002309295.1| tubulin gamma complex-associated protein [Populus trichocarpa]
gi|222855271|gb|EEE92818.1| tubulin gamma
complex-associated protein [Populus trichocarpa]
Length = 860
Score = 223 bits (568), Expect(2) = 2e-66
Identities = 109/146 (74%), Positives = 123/146 (84%)
Frame = +3
Query: 3 GYVVLDSVKVPRATRIMVRKLCELGWLFKKVKGYVSESMDKFPAEEVGTVGQAFCAALQD 182
GYV+ DS+KVPR TR+MVRKLCELGWLF+KVKGY+SESMD+FPAE+VGTVGQAFCAALQD
Sbjct: 224 GYVLSDSIKVPRGTRVMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQD 283
Query: 183 ELSEYYKLLAVLEAQSMNPIPMVSEVVSSGNYLSLRRLSVWFAEPTVKMRLMAVLVDSCK 362
ELS+YYKLLAVLEAQ+MNPIP+VS+ SS NYLSLRRLSVWFAEPTVKMRLMAVLVD C+
Sbjct: 284 ELSDYYKLLAVLEAQAMNPIPLVSKSTSSSNYLSLRRLSVWFAEPTVKMRLMAVLVDKCR 343
Query: 363 VMKXXXXXXXXXXXXXXXDSLVREFM 440
V++ D LV EFM
Sbjct: 344 VLRGGAMAGAIHLHAQHGDPLVHEFM 369
Score = 54.7 bits (130), Expect(2) = 2e-66
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 464 AEPLWRDGYMLHSGMLPSFISQSLAQRILR 553
AE LWR+GY LH+GMLPSFISQ LAQRILR
Sbjct: 409 AESLWREGYRLHAGMLPSFISQPLAQRILR 438
>ref|XP_002275839.1| PREDICTED: gamma-tubulin complex component 3 homolog [Vitis
vinifera]
Length = 854
Score = 219 bits (558), Expect(2) = 9e-66
Identities = 108/146 (73%), Positives = 121/146 (82%)
Frame = +3
Query: 3 GYVVLDSVKVPRATRIMVRKLCELGWLFKKVKGYVSESMDKFPAEEVGTVGQAFCAALQD 182
GY++ DS+KVPRATRI V+KLCELGWLF+KVKGY+SESMD+FPAE+VGTVGQAFCAALQD
Sbjct: 218 GYLLRDSIKVPRATRITVQKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQD 277
Query: 183 ELSEYYKLLAVLEAQSMNPIPMVSEVVSSGNYLSLRRLSVWFAEPTVKMRLMAVLVDSCK 362
ELS YYKLLAVLEAQSMNPIP+VSE +SG YLSLRRLSVWFAEP VKMRLMAVLVD C+
Sbjct: 278 ELSHYYKLLAVLEAQSMNPIPLVSETANSGTYLSLRRLSVWFAEPMVKMRLMAVLVDKCR 337
Query: 363 VMKXXXXXXXXXXXXXXXDSLVREFM 440
V++ D LV EFM
Sbjct: 338 VLRGGAMAGAIHLHAQHGDPLVHEFM 363
Score = 56.6 bits (135), Expect(2) = 9e-66
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +2
Query: 464 AEPLWRDGYMLHSGMLPSFISQSLAQRILR 553
AE LWR+GY LH+GMLPSFISQSLAQRILR
Sbjct: 403 AESLWREGYRLHAGMLPSFISQSLAQRILR 432
>ref|XP_002322735.1| tubulin gamma complex-associated protein [Populus trichocarpa]
gi|222867365|gb|EEF04496.1| tubulin gamma
complex-associated protein [Populus trichocarpa]
Length = 844
Score = 221 bits (563), Expect(2) = 9e-66
Identities = 108/146 (73%), Positives = 122/146 (83%)
Frame = +3
Query: 3 GYVVLDSVKVPRATRIMVRKLCELGWLFKKVKGYVSESMDKFPAEEVGTVGQAFCAALQD 182
GYV+LDS+KVPR TR+MVRKLCELGWLF+KVKGY+SESMD+FPAE+VGTVGQAFCAALQ+
Sbjct: 221 GYVLLDSIKVPRGTRVMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQN 280
Query: 183 ELSEYYKLLAVLEAQSMNPIPMVSEVVSSGNYLSLRRLSVWFAEPTVKMRLMAVLVDSCK 362
EL +YYKLLAVLEAQ+MNPIP+VSE SSGNYLSLRRL VWFAEP VKMRLMAVLVD C+
Sbjct: 281 ELLDYYKLLAVLEAQAMNPIPLVSETASSGNYLSLRRLLVWFAEPIVKMRLMAVLVDKCR 340
Query: 363 VMKXXXXXXXXXXXXXXXDSLVREFM 440
V++ D LV EFM
Sbjct: 341 VLRGGAMAGAIHLHAQHGDPLVNEFM 366
Score = 54.7 bits (130), Expect(2) = 9e-66
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 464 AEPLWRDGYMLHSGMLPSFISQSLAQRILR 553
AE LWR+GY LH+GMLPSFISQ LAQRILR
Sbjct: 406 AEALWREGYRLHAGMLPSFISQPLAQRILR 435
>ref|XP_004161669.1| PREDICTED: LOW QUALITY PROTEIN: gamma-tubulin complex component
3-like [Cucumis sativus]
Length = 846
Score = 212 bits (539), Expect(2) = 8e-64
Identities = 104/146 (71%), Positives = 118/146 (80%)
Frame = +3
Query: 3 GYVVLDSVKVPRATRIMVRKLCELGWLFKKVKGYVSESMDKFPAEEVGTVGQAFCAALQD 182
GYV+ + VK RATR MVRKLCE+GWLF+KVKGY+SESM++FPAE++GTVG AFCAALQD
Sbjct: 211 GYVLSNLVKASRATRTMVRKLCEMGWLFRKVKGYISESMERFPAEDIGTVGHAFCAALQD 270
Query: 183 ELSEYYKLLAVLEAQSMNPIPMVSEVVSSGNYLSLRRLSVWFAEPTVKMRLMAVLVDSCK 362
ELSEYYKLLA+LEAQSMNPIP+VSE SSGNYLSLRRL+VWFAEP KMRLMAVLVD C+
Sbjct: 271 ELSEYYKLLAILEAQSMNPIPLVSEAASSGNYLSLRRLAVWFAEPMAKMRLMAVLVDKCR 330
Query: 363 VMKXXXXXXXXXXXXXXXDSLVREFM 440
V+K D LV EFM
Sbjct: 331 VLKGGTMAGAIHLHAQHGDPLVLEFM 356
Score = 57.4 bits (137), Expect(2) = 8e-64
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2
Query: 455 QSAAEPLWRDGYMLHSGMLPSFISQSLAQRILR 553
Q AE LWR+GY LH+GMLPSFISQSLAQRILR
Sbjct: 393 QVKAESLWREGYRLHAGMLPSFISQSLAQRILR 425