BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005723
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   344   2e-92
ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloropla...   328   1e-87
ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus c...   323   4e-86
ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi...   319   8e-85
ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solan...   303   6e-80

>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
            gi|296087647|emb|CBI34903.3| unnamed protein product
            [Vitis vinifera]
          Length = 275

 Score =  344 bits (883), Expect = 2e-92
 Identities = 178/276 (64%), Positives = 211/276 (76%), Gaps = 10/276 (3%)
 Frame = -1

Query: 1019 MARAIFLQQSSLSNKLLPPFSHHASFPRRLSHRHLF----------SHTRLISLKTMALA 870
            MA A  L  S LSN  LP   H ++     SH H F          +  RL  ++    A
Sbjct: 1    MAFASCLHSSYLSNTFLPILRHRSALSTSTSHLHRFCSPSRFFSSANRFRLPLMQVQVQA 60

Query: 869  KQTFSSSKKDPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMY 690
            K+ FS  K++ +ASP DL F++PLKIVEYPDPILRA NK I TFD+N++KLV EMFD+MY
Sbjct: 61   KRGFSF-KEEVIASPADLSFEAPLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMY 119

Query: 689  KTDGIGVSAPQVGINVRLMVFNEGGDRGVGEEIVLINPRIYKYSKKIAVFNEGCLSFPGI 510
            KTDGIG+SAPQVGINV+LMVFN  G+RG GEEIVL+NPR+ KYSKKI +FNEGCLSFPGI
Sbjct: 120  KTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGI 179

Query: 509  YADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISA 330
            YADV+RPESVK+DA+DITGA+F  NLSGL ARVFQHEFDHLQGTLFFDRMTE+VLDSI A
Sbjct: 180  YADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHA 239

Query: 329  ELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 222
             LQ LE+K+ED TG PSPE + +  R++V AGFG+S
Sbjct: 240  NLQDLERKYEDRTGFPSPERIETRKRRKVAAGFGKS 275


>ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
           sativus]
          Length = 273

 Score =  328 bits (841), Expect = 1e-87
 Identities = 173/266 (65%), Positives = 214/266 (80%), Gaps = 10/266 (3%)
 Frame = -1

Query: 989 SLSNKLLPPFSHHASFP---RRLSHRH----LFSHT---RLISLKTMALAKQTFSSSKKD 840
           SL + LLP  S   S P   RRLS       LFSH+   +  S    A AK+ FS+ K+D
Sbjct: 10  SLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAKRGFSA-KED 68

Query: 839 PLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGVSAP 660
            +AS  DL F++PLKIVEYPDPILRA NKRIG+FD+N++KLV+EMFD+MYKTDGIG+SAP
Sbjct: 69  DVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKTDGIGLSAP 128

Query: 659 QVGINVRLMVFNEGGDRGVGEEIVLINPRIYKYSKKIAVFNEGCLSFPGIYADVKRPESV 480
           QVG+NV+LMVFN  G+RG GEEIVL+NP++Y+YSKK  +FNEGCLSFP IYADV+RPES+
Sbjct: 129 QVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYADVERPESI 188

Query: 479 KVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISAELQALEKKFE 300
           K+DA+DI+G +F  NLSGLSARVFQHEFDHLQGTLFFDRMT++VL++I  +LQALEKK+E
Sbjct: 189 KIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQLQALEKKYE 248

Query: 299 DVTGLPSPENVNSHIRKRVVAGFGRS 222
           D TGLPSPE +  + R++V AGFG+S
Sbjct: 249 DRTGLPSPERI-ENFRRKVGAGFGKS 273


>ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
           gi|223539350|gb|EEF40941.1| polypeptide deformylase,
           putative [Ricinus communis]
          Length = 282

 Score =  323 bits (828), Expect = 4e-86
 Identities = 160/224 (71%), Positives = 188/224 (83%)
 Frame = -1

Query: 893 SLKTMALAKQTFSSSKKDPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLV 714
           S+   A AK++FS  K++ +A+P DL F+ PLKIVEYPDPILR  NKRI TFD+N++KLV
Sbjct: 60  SIPVRAQAKRSFSF-KEEEIATPADLCFEEPLKIVEYPDPILRRKNKRIDTFDDNLKKLV 118

Query: 713 REMFDIMYKTDGIGVSAPQVGINVRLMVFNEGGDRGVGEEIVLINPRIYKYSKKIAVFNE 534
            EMFD+MYKTDGIG+SAPQVGINV+LMVFN  G+RG GEEIVLINPR+ KYSKKI  FNE
Sbjct: 119 DEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLINPRLNKYSKKIVPFNE 178

Query: 533 GCLSFPGIYADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTE 354
           GCLSFPGIYADV RPESVK+DA+DI GA+FT NLSGL ARVFQHE+DHL+G LFFDRMT+
Sbjct: 179 GCLSFPGIYADVLRPESVKIDARDINGARFTVNLSGLPARVFQHEYDHLEGILFFDRMTD 238

Query: 353 QVLDSISAELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 222
           +VLDSI A+LQALEKKFED TG  SPE + +   K+  AGFG+S
Sbjct: 239 EVLDSIRAQLQALEKKFEDKTGYASPEKIETRKTKKAAAGFGKS 282


>ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
           gi|222847305|gb|EEE84852.1| peptide deformylase [Populus
           trichocarpa]
          Length = 258

 Score =  319 bits (817), Expect = 8e-85
 Identities = 170/262 (64%), Positives = 201/262 (76%), Gaps = 8/262 (3%)
 Frame = -1

Query: 986 LSNKLLPPFSHHASF----PRRLSHRHLFSHT----RLISLKTMALAKQTFSSSKKDPLA 831
           LS  LL P+ H  +     P RL+    FS T    R  SL   + AK+     K+D +A
Sbjct: 1   LSRALLLPYLHSRTQTLCEPIRLAR---FSSTMKQPRPPSLFVRSQAKRG-PFLKQDQVA 56

Query: 830 SPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGVSAPQVG 651
           +  DL F++PLKIVEYPDPILRA NKRI +FD+N++KLV EMFD+MYKTDGIG+SAPQVG
Sbjct: 57  ATSDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVG 116

Query: 650 INVRLMVFNEGGDRGVGEEIVLINPRIYKYSKKIAVFNEGCLSFPGIYADVKRPESVKVD 471
           INV+LMVFN   + G G+EIVL+NPR+ KYSKK  +FNEGCLSFPGIYADVKRPESVK+D
Sbjct: 117 INVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKID 176

Query: 470 AQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSISAELQALEKKFEDVT 291
           A+DI GA+FT NLSGL ARVFQHEFDHLQG LFFDRMTE+VLDSI   LQALEKK+ED T
Sbjct: 177 ARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYEDKT 236

Query: 290 GLPSPENVNSHIRKRVVAGFGR 225
           G PSPE + +H  K+V AGFG+
Sbjct: 237 GFPSPERIETHRLKKVAAGFGK 258


>ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
            gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName: Full=Peptide
            deformylase 1B, chloroplastic; Short=PDF 1B; AltName:
            Full=Polypeptide deformylase; Flags: Precursor
            gi|11320950|gb|AAG33972.1| peptide deformylase-like
            protein [Solanum lycopersicum]
          Length = 279

 Score =  303 bits (775), Expect = 6e-80
 Identities = 162/278 (58%), Positives = 201/278 (72%), Gaps = 12/278 (4%)
 Frame = -1

Query: 1019 MARAIFLQQSSLSNKLLPPFSHHASFPRRLS---HRHLFSHTRLIS--------LKTMAL 873
            MA A +   SS +  L P  S ++S P  +S   HR+  ++    S        L   A 
Sbjct: 3    MAAASWASSSSFTRFLRPLLSRNSS-PSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQ 61

Query: 872  AKQTFSSSKK-DPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDI 696
            A++  SS  K D +A+P DL F  PLKIVEYPDPILRA NKRI  FD N++KLV EMFDI
Sbjct: 62   ARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDI 121

Query: 695  MYKTDGIGVSAPQVGINVRLMVFNEGGDRGVGEEIVLINPRIYKYSKKIAVFNEGCLSFP 516
            MYKTDGIG+SAPQVG+NV+LMVFN  G+RG GEEIVL+NPR+ +YS++I  + EGCLSFP
Sbjct: 122  MYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFP 181

Query: 515  GIYADVKRPESVKVDAQDITGAKFTANLSGLSARVFQHEFDHLQGTLFFDRMTEQVLDSI 336
             I+ DVKRPESVKVDAQDI G +F  +LS L ARVFQHEFDHLQG LFFD+MT++VLD+I
Sbjct: 182  MIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTI 241

Query: 335  SAELQALEKKFEDVTGLPSPENVNSHIRKRVVAGFGRS 222
              +L ALEKK+ED TGLP+PE++N+   K+   GFG+S
Sbjct: 242  REKLVALEKKYEDRTGLPTPESINTRKIKKAAVGFGKS 279