BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005613
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36966.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
ref|XP_002515260.1| pentatricopeptide repeat-containing protein,...   100   2e-19

>emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  119 bits (297), Expect = 3e-25
 Identities = 65/119 (54%), Positives = 81/119 (68%), Gaps = 10/119 (8%)
 Frame = +3

Query: 12  HPSPTNRNIVKPNVS-------QNPNFQSLSHLPTSKSQLGVDFRGRKSTRFSSKTHFRG 170
           +P P+ RN  KP  +       +N NF SLS LP SKS+L  DF GR+STRF SK HF  
Sbjct: 45  NPLPSPRNAAKPGAASPATATNRNSNFPSLSPLPPSKSELTADFSGRRSTRFVSKMHFGR 104

Query: 171 PKTSSG---SPAAEEALQQALRFSRDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRG 338
           PKT++    +  AEEAL+ A+RF+ DD G +DSVL ++ES+ CGSDDY FLLRE GNRG
Sbjct: 105 PKTAAAARHTSTAEEALRHAIRFASDDKG-IDSVLLNFESRLCGSDDYTFLLRELGNRG 162


>ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  119 bits (297), Expect = 3e-25
 Identities = 65/119 (54%), Positives = 81/119 (68%), Gaps = 10/119 (8%)
 Frame = +3

Query: 12  HPSPTNRNIVKPNVS-------QNPNFQSLSHLPTSKSQLGVDFRGRKSTRFSSKTHFRG 170
           +P P+ RN  KP  +       +N NF SLS LP SKS+L  DF GR+STRF SK HF  
Sbjct: 45  NPLPSPRNAAKPGAASPATATNRNSNFPSLSPLPPSKSELTADFSGRRSTRFVSKMHFGR 104

Query: 171 PKTSSG---SPAAEEALQQALRFSRDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRG 338
           PKT++    +  AEEAL+ A+RF+ DD G +DSVL ++ES+ CGSDDY FLLRE GNRG
Sbjct: 105 PKTAAAARHTSTAEEALRHAIRFASDDKG-IDSVLLNFESRLCGSDDYTFLLRELGNRG 162


>ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  111 bits (278), Expect = 5e-23
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = +3

Query: 51  VSQNPNFQSLSHLPTSKSQLGVDFRGRKSTRFSSKTHFRGPK---TSSGSPAAEEALQQA 221
           +SQ+PNF SL  LPTSKS+L  +F GR+STRF SK HF  PK   T+  S  AEE L Q 
Sbjct: 67  LSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSAIAEEVLHQV 126

Query: 222 LRFSRDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRG 338
           L+F + DD SLD++L ++ESK CGS+DY FLLRE GNRG
Sbjct: 127 LQFGK-DDASLDNILLNFESKLCGSEDYTFLLRELGNRG 164


>ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  111 bits (278), Expect = 5e-23
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = +3

Query: 51  VSQNPNFQSLSHLPTSKSQLGVDFRGRKSTRFSSKTHFRGPK---TSSGSPAAEEALQQA 221
           +SQ+PNF SL  LPTSKS+L  +F GR+STRF SK HF  PK   T+  S  AEE L Q 
Sbjct: 67  LSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSAIAEEVLHQV 126

Query: 222 LRFSRDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRG 338
           L+F + DD SLD++L ++ESK CGS+DY FLLRE GNRG
Sbjct: 127 LQFGK-DDASLDNILLNFESKLCGSEDYTFLLRELGNRG 164


>ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545740|gb|EEF47244.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score =  100 bits (248), Expect = 2e-19
 Identities = 52/95 (54%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
 Frame = +3

Query: 60  NPNFQSLSHLPTSKSQLGVDFRGRKSTRFSSKTHFRGPKTSSG--SPAAEEALQQALRFS 233
           NP F SLS L + KS L  DF GR+STRF SK HF  PKT+    +  A EALQQ +++ 
Sbjct: 74  NPTFHSLSPLQSQKSDLSADFSGRRSTRFVSKLHFGRPKTNMNRHTSVALEALQQVIQYG 133

Query: 234 RDDDGSLDSVLRSYESKFCGSDDYGFLLREFGNRG 338
           +DD  +L++VL ++ES+ CG DDY FLLRE GNRG
Sbjct: 134 KDDK-ALENVLLNFESRLCGPDDYTFLLRELGNRG 167