BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005600
         (1115 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containi...   547   e-153
emb|CBI19224.3| unnamed protein product [Vitis vinifera]              489   e-136
ref|XP_002307350.1| predicted protein [Populus trichocarpa] gi|2...   474   e-131
ref|XP_002513996.1| pentatricopeptide repeat-containing protein,...   464   e-128
ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containi...   460   e-127

>ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like
            [Vitis vinifera]
          Length = 475

 Score =  547 bits (1410), Expect = e-153
 Identities = 262/371 (70%), Positives = 317/371 (85%)
 Frame = -3

Query: 1113 IMSWMNSQNSFRMSTADHAILLELIIKVRSLAEAEEYFENIPDSSSQKAACIPLLQSYVK 934
            I++WM +QN F+MS ADHAI LELIIK++SLAEAEEYFE++P+SSS+KAAC+PLL +YVK
Sbjct: 65   ILAWMEAQNRFQMSAADHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVK 124

Query: 933  ERETGKAEALMLKMQALGYTVNPHPFNEMMKLYDATGQFEKVLYVIQQMKHNRIPRNVLS 754
            ER   KAEALMLK+  LG TV+PHPFNEMMKLY AT QFE+V  VI QMK N+IP NVLS
Sbjct: 125  ERAIEKAEALMLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLS 184

Query: 753  YNIWMNACSQLSGVAAVETVCREMLNDKSVKVGWSTHSTLANIYINSGLVEKATAALKTA 574
            YN+WM+ACS++SG+A+ E V ++M++DK+V+VGWST STLANIY+ SGL++KA  ALK A
Sbjct: 185  YNLWMSACSEVSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNA 244

Query: 573  EQMLSMHKRLGYFFLITLYASLGNKDGILRLWEASKAVTGRMTSANYMSILLCLVKIGDI 394
            E+ LS H RLGYFFLIT+YASL NK+ +LRLWEASK V GR+TS NYM ILLCLVK+GDI
Sbjct: 245  EKKLSAHNRLGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDI 304

Query: 393  AEAEKVFRSWESECRKYDIRVSNILLGAYVRSGWIDKAESLHLHTLEKGGCPNYKTWEIL 214
            AEAE++FR WES+C KYDIRVSN+LLGAY+R+G +DKAESLHLHTLE+GGCPNYKTWEIL
Sbjct: 305  AEAERIFREWESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEIL 364

Query: 213  MEGWVKNKEMDKAISAMKKGFSMLKHCDWRPSSTTVMAIAEYFEECGRYEEAQKYVMVLR 34
            MEGW+K++ MDKAI+AMKKGFSMLKHCDWRP+   V AIA Y EE G   +  +YV V+ 
Sbjct: 365  MEGWMKSQNMDKAINAMKKGFSMLKHCDWRPNHGLVTAIARYLEEHGNVNDLNQYVKVIH 424

Query: 33   RLGIASLPLYK 1
            +LG+A LPLYK
Sbjct: 425  QLGVAKLPLYK 435


>emb|CBI19224.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  489 bits (1259), Expect = e-136
 Identities = 234/324 (72%), Positives = 285/324 (87%)
 Frame = -3

Query: 1113 IMSWMNSQNSFRMSTADHAILLELIIKVRSLAEAEEYFENIPDSSSQKAACIPLLQSYVK 934
            I++WM +QN F+MS ADHAI LELIIK++SLAEAEEYFE++P+SSS+KAAC+PLL +YVK
Sbjct: 92   ILAWMEAQNRFQMSAADHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVK 151

Query: 933  ERETGKAEALMLKMQALGYTVNPHPFNEMMKLYDATGQFEKVLYVIQQMKHNRIPRNVLS 754
            ER   KAEALMLK+  LG TV+PHPFNEMMKLY AT QFE+V  VI QMK N+IP NVLS
Sbjct: 152  ERAIEKAEALMLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLS 211

Query: 753  YNIWMNACSQLSGVAAVETVCREMLNDKSVKVGWSTHSTLANIYINSGLVEKATAALKTA 574
            YN+WM+ACS++SG+A+ E V ++M++DK+V+VGWST STLANIY+ SGL++KA  ALK A
Sbjct: 212  YNLWMSACSEVSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNA 271

Query: 573  EQMLSMHKRLGYFFLITLYASLGNKDGILRLWEASKAVTGRMTSANYMSILLCLVKIGDI 394
            E+ LS H RLGYFFLIT+YASL NK+ +LRLWEASK V GR+TS NYM ILLCLVK+GDI
Sbjct: 272  EKKLSAHNRLGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDI 331

Query: 393  AEAEKVFRSWESECRKYDIRVSNILLGAYVRSGWIDKAESLHLHTLEKGGCPNYKTWEIL 214
            AEAE++FR WES+C KYDIRVSN+LLGAY+R+G +DKAESLHLHTLE+GGCPNYKTWEIL
Sbjct: 332  AEAERIFREWESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEIL 391

Query: 213  MEGWVKNKEMDKAISAMKKGFSML 142
            MEGW+K++ MDKAI+AMKKGFS++
Sbjct: 392  MEGWMKSQNMDKAINAMKKGFSII 415


>ref|XP_002307350.1| predicted protein [Populus trichocarpa] gi|222856799|gb|EEE94346.1|
            predicted protein [Populus trichocarpa]
          Length = 511

 Score =  474 bits (1220), Expect = e-131
 Identities = 226/373 (60%), Positives = 292/373 (78%), Gaps = 2/373 (0%)
 Frame = -3

Query: 1113 IMSWMNSQNSFRMSTADHAILLELIIKVRSLAEAEEYFENIPDSSSQKAACIPLLQSYVK 934
            I+ WM +QN+FR++   HA+++ELI+KV  L +A EYFE IP S S+KAA +PLL  YVK
Sbjct: 100  ILQWMENQNNFRITPGHHALMMELIVKVNGLNKAGEYFERIPGSGSKKAASLPLLHGYVK 159

Query: 933  ERETGKAEALMLKMQALGYTVNPHPFNEMMKLYDATGQFEKVLYVIQQMKHNRIPRNVLS 754
            ER+  KAE+ M+K+ + G  V PHP+NEMMKLY A  Q+EKV  VI +MK N++ RNVLS
Sbjct: 160  ERDISKAESFMIKLSSSGLLVTPHPYNEMMKLYMALSQYEKVPLVIAEMKRNKLCRNVLS 219

Query: 753  YNIWMNACSQLSGVAAVETVCREMLNDKSVKVGWSTHSTLANIYINSGLVEKATAALKTA 574
            YN+WM A  ++  VA  E V +EM++D++V VGWST ++LAN+YI +G V+KA   LK A
Sbjct: 220  YNLWMGAFGEVFEVAKAEMVYKEMVSDENVGVGWSTLASLANVYIKAGFVDKALLVLKDA 279

Query: 573  EQMLSMHKRLGYFFLITLYASLGNKDGILRLWEASKAVTGRMTSANYMSILLCLVKIGDI 394
            E  LS + RLGYFFLITLY+SL NK+G+LRLWEASKAV GR+  A+YM ++ CLVK+GD+
Sbjct: 280  EMKLSTNGRLGYFFLITLYSSLKNKEGVLRLWEASKAVGGRIPCADYMCVISCLVKVGDL 339

Query: 393  AEAEKVFRSWESECRKYDIRVSNILLGAYVRSGWIDKAESLHLHTLEKGGCPNYKTWEIL 214
              AE+VF  WE+ C KYDIRVSN+LLGAYVR+G + KAES HLHT+E+GGCPNYKTWEIL
Sbjct: 340  VAAEQVFAEWETNCFKYDIRVSNVLLGAYVRNGLMGKAESFHLHTVERGGCPNYKTWEIL 399

Query: 213  MEGWVKNKEMDKAISAMKKGFSMLK--HCDWRPSSTTVMAIAEYFEECGRYEEAQKYVMV 40
            MEGWVK+++MDKAI AMKKGFS+LK   CDWRPS + +MAIAE+FE+ G +E+A  Y+  
Sbjct: 400  MEGWVKSQKMDKAIDAMKKGFSVLKVERCDWRPSHSILMAIAEHFEKHGNFEDANHYIKA 459

Query: 39   LRRLGIASLPLYK 1
            +  LG+A+LPLYK
Sbjct: 460  VHGLGVATLPLYK 472


>ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547082|gb|EEF48579.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 496

 Score =  464 bits (1195), Expect = e-128
 Identities = 228/372 (61%), Positives = 287/372 (77%), Gaps = 1/372 (0%)
 Frame = -3

Query: 1113 IMSWMNSQNSFRMSTADHAILLELIIKVRSLAEAEEYFENIP-DSSSQKAACIPLLQSYV 937
            I +WM +Q +FRMS +D+A+ LELIIKV  + EAEEYF  IP DS ++KAA   LL  YV
Sbjct: 83   IFTWMETQKNFRMSVSDYALRLELIIKVNGIEEAEEYFNFIPHDSVTRKAASFALLHGYV 142

Query: 936  KERETGKAEALMLKMQALGYTVNPHPFNEMMKLYDATGQFEKVLYVIQQMKHNRIPRNVL 757
            K ++  KAEALM+K+  LG  VN +PFNEMMKLY AT Q+EKV  VI QMK N+I  N+L
Sbjct: 143  KVKDVVKAEALMMKLYNLGLIVNCYPFNEMMKLYMATSQYEKVALVIDQMKRNKIALNLL 202

Query: 756  SYNIWMNACSQLSGVAAVETVCREMLNDKSVKVGWSTHSTLANIYINSGLVEKATAALKT 577
            SYN+WM++  ++S V  VE V +EM+ND +V+VGWST +TLANIY  +G+V+KA  ALK 
Sbjct: 203  SYNLWMSSYGEVSKVVKVELVYKEMVNDDNVEVGWSTLATLANIYTKAGIVDKALLALKN 262

Query: 576  AEQMLSMHKRLGYFFLITLYASLGNKDGILRLWEASKAVTGRMTSANYMSILLCLVKIGD 397
            AE++LS    LGYFFL+T Y+SL NK+G+ RLWEA K V GR+T ANYM +L CLVK+GD
Sbjct: 263  AEKILSTSHLLGYFFLMTQYSSLKNKEGVQRLWEACKGVNGRITCANYMCVLSCLVKVGD 322

Query: 396  IAEAEKVFRSWESECRKYDIRVSNILLGAYVRSGWIDKAESLHLHTLEKGGCPNYKTWEI 217
            + EAEKVFR WE  CRKYDIRVSN+LLGAYVR G ++KAESLHLHTL++GGCPNYKT EI
Sbjct: 323  LLEAEKVFRDWELNCRKYDIRVSNVLLGAYVRKGLMNKAESLHLHTLDRGGCPNYKTLEI 382

Query: 216  LMEGWVKNKEMDKAISAMKKGFSMLKHCDWRPSSTTVMAIAEYFEECGRYEEAQKYVMVL 37
            LMEGWVK+++MDKAI AM +  SML+HC WRPS   +M+IAE+ E    +E+A  ++ V+
Sbjct: 383  LMEGWVKSQKMDKAIDAMTQAISMLEHCHWRPSHGIIMSIAEHLERNRNFEDANHFIQVI 442

Query: 36   RRLGIASLPLYK 1
              LG+ASLPLYK
Sbjct: 443  HHLGVASLPLYK 454


>ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like
            [Glycine max]
          Length = 496

 Score =  460 bits (1183), Expect = e-127
 Identities = 226/373 (60%), Positives = 288/373 (77%), Gaps = 2/373 (0%)
 Frame = -3

Query: 1113 IMSWMNSQNSFRMSTADHAILLELIIKVRSLAEAEEYFENIPDSSSQKAACIPLLQSYVK 934
            +  W+ +Q +F M  ADHA+ LELII+   L EAEEYF N+PDS+++KAAC+ LL+ YV+
Sbjct: 84   VFEWIKNQKNFHMIPADHAMKLELIIENHGLMEAEEYFMNLPDSAAKKAACLILLRGYVR 143

Query: 933  ERETGKAEALMLKMQALGYTVNPHPFNEMMKLYDATGQFEKVLYVIQQMKHNRIPRNVLS 754
            +R+T KAE  MLK+  LG  V+PHPFNEMMKLY  T ++ KV  VIQQMK N+IP NVLS
Sbjct: 144  DRDTSKAETFMLKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLS 203

Query: 753  YNIWMNACSQLSG--VAAVETVCREMLNDKSVKVGWSTHSTLANIYINSGLVEKATAALK 580
            YN+WMNACS+  G  VAAVETV R+MLND++V+VGW + +TLAN Y  +G  +KA   LK
Sbjct: 204  YNLWMNACSEEEGYVVAAVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLK 263

Query: 579  TAEQMLSMHKRLGYFFLITLYASLGNKDGILRLWEASKAVTGRMTSANYMSILLCLVKIG 400
             AE+ LS   RLG+FFLITLYASL +K+G+LRLWEASKAV GR++ ANY+ IL CLVK+G
Sbjct: 264  DAEKKLSTCNRLGHFFLITLYASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLG 323

Query: 399  DIAEAEKVFRSWESECRKYDIRVSNILLGAYVRSGWIDKAESLHLHTLEKGGCPNYKTWE 220
            DI +A+++F  WES C+KYDIRVSN+LLGAYVR+G +++AESLHLHTL+KGGCPNYKT E
Sbjct: 324  DIVQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTLE 383

Query: 219  ILMEGWVKNKEMDKAISAMKKGFSMLKHCDWRPSSTTVMAIAEYFEECGRYEEAQKYVMV 40
            ILMEG+V  ++MD+AI  MK+  +M+K C WRP    V+AIAEY E+ G  E A KY+  
Sbjct: 384  ILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGIVLAIAEYLEKDGNLEYADKYITD 443

Query: 39   LRRLGIASLPLYK 1
            +  LG+ SL LYK
Sbjct: 444  IHNLGLVSLSLYK 456