BLASTX nr result
ID: Coptis24_contig00004997
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004997
(598 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containi... 236 2e-60
emb|CBI28421.3| unnamed protein product [Vitis vinifera] 236 2e-60
emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera] 236 2e-60
ref|XP_002531694.1| pentatricopeptide repeat-containing protein,... 234 6e-60
ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containi... 227 1e-57
>ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 236 bits (603), Expect = 2e-60
Identities = 121/202 (59%), Positives = 155/202 (76%), Gaps = 4/202 (1%)
Frame = +3
Query: 3 RVCCLLSHDPQWQKNTELINHLSPKLTPNHVAMILDKNQNTESTLRFFYWV--RHFYKHN 176
RVC +LS QW+ ++EL LSP+L +HVA I+ +++TES ++FFYW+ R FYKHN
Sbjct: 50 RVCAILSR-VQWKGSSEL-KQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHN 107
Query: 177 IDCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLS--GKKEFEMSLYSYN 350
++CF MLNRL+R R+F PADH+RILMIK CRNE E+ RV +FL+ F SLYS N
Sbjct: 108 MNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCN 167
Query: 351 TLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLDY 530
TLLI L+KF+MV A+N+YK+ML+ G+QPSLLTFNTLIN+L KKGKV EAEL+ Q+ Y
Sbjct: 168 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY 227
Query: 531 RMVPDVFTYTSFVLGHCRNRNV 596
+ PDVFTYTS +LGHCRNRN+
Sbjct: 228 DLSPDVFTYTSLILGHCRNRNL 249
Score = 57.8 bits (138), Expect = 1e-06
Identities = 25/81 (30%), Positives = 51/81 (62%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SYN ++ LSK + A+ + +M+ G+ P+++T+ TLI+ LC+ G+ A +F+ +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609
Query: 522 LDYRMVPDVFTYTSFVLGHCR 584
+ +P+++TY+S + G C+
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQ 630
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SY L+ SK V +A ++ K M G P++ ++N +IN L K+ + EAE + ++
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 522 LDYRMVPDVFTYTSFVLGHCRN 587
++ ++P+V TYT+ + G CRN
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRN 596
>emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 236 bits (603), Expect = 2e-60
Identities = 121/202 (59%), Positives = 155/202 (76%), Gaps = 4/202 (1%)
Frame = +3
Query: 3 RVCCLLSHDPQWQKNTELINHLSPKLTPNHVAMILDKNQNTESTLRFFYWV--RHFYKHN 176
RVC +LS QW+ ++EL LSP+L +HVA I+ +++TES ++FFYW+ R FYKHN
Sbjct: 50 RVCAILSR-VQWKGSSEL-KQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHN 107
Query: 177 IDCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLS--GKKEFEMSLYSYN 350
++CF MLNRL+R R+F PADH+RILMIK CRNE E+ RV +FL+ F SLYS N
Sbjct: 108 MNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCN 167
Query: 351 TLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLDY 530
TLLI L+KF+MV A+N+YK+ML+ G+QPSLLTFNTLIN+L KKGKV EAEL+ Q+ Y
Sbjct: 168 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY 227
Query: 531 RMVPDVFTYTSFVLGHCRNRNV 596
+ PDVFTYTS +LGHCRNRN+
Sbjct: 228 DLSPDVFTYTSLILGHCRNRNL 249
Score = 57.8 bits (138), Expect = 1e-06
Identities = 25/81 (30%), Positives = 51/81 (62%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SYN ++ LSK + A+ + +M+ G+ P+++T+ TLI+ LC+ G+ A +F+ +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609
Query: 522 LDYRMVPDVFTYTSFVLGHCR 584
+ +P+++TY+S + G C+
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQ 630
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SY L+ SK V +A ++ K M G P++ ++N +IN L K+ + EAE + ++
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 522 LDYRMVPDVFTYTSFVLGHCRN 587
++ ++P+V TYT+ + G CRN
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRN 596
>emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 236 bits (603), Expect = 2e-60
Identities = 121/202 (59%), Positives = 155/202 (76%), Gaps = 4/202 (1%)
Frame = +3
Query: 3 RVCCLLSHDPQWQKNTELINHLSPKLTPNHVAMILDKNQNTESTLRFFYWV--RHFYKHN 176
RVC +LS QW+ ++EL LSP+L +HVA I+ +++TES ++FFYW+ R FYKHN
Sbjct: 92 RVCAILSR-VQWKGSSEL-KQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHN 149
Query: 177 IDCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLS--GKKEFEMSLYSYN 350
++CF MLNRL+R R+F PADH+RILMIK CRNE E+ RV +FL+ F SLYS N
Sbjct: 150 MNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCN 209
Query: 351 TLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLDY 530
TLLI L+KF+MV A+N+YK+ML+ G+QPSLLTFNTLIN+L KKGKV EAEL+ Q+ Y
Sbjct: 210 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY 269
Query: 531 RMVPDVFTYTSFVLGHCRNRNV 596
+ PDVFTYTS +LGHCRNRN+
Sbjct: 270 DLSPDVFTYTSLILGHCRNRNL 291
Score = 57.0 bits (136), Expect = 2e-06
Identities = 25/81 (30%), Positives = 50/81 (61%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SYN ++ LSK + A+ + +M G+ P+++T+ TLI+ LC+ G+ A +F+ +
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651
Query: 522 LDYRMVPDVFTYTSFVLGHCR 584
+ +P+++TY+S + G C+
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQ 672
Score = 55.1 bits (131), Expect = 9e-06
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +3
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
SY TL+ SK V +A ++ + M G P++ ++N +IN L K+ + EAE + ++
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616
Query: 522 LDYRMVPDVFTYTSFVLGHCRN 587
+ ++P+V TYT+ + G CRN
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRN 638
>ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528670|gb|EEF30685.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 821
Score = 234 bits (598), Expect = 6e-60
Identities = 116/205 (56%), Positives = 150/205 (73%), Gaps = 7/205 (3%)
Frame = +3
Query: 3 RVCCLLSHDPQWQKNTELINHLSPKLTPNHVAMILDKNQNTESTLRFFYWV--RHFYKHN 176
+V L+S DP W KN EL N L+ L P+HV+ I++ + NT++ L+FFYW+ RHFYKH+
Sbjct: 45 KVLDLISTDPHWPKNPEL-NRLASTLRPHHVSKIINTHINTDTALQFFYWISKRHFYKHD 103
Query: 177 IDCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLSGKKE-----FEMSLY 341
+ CF MLNRL++ ++ PADHVRILMIK CRNE EL RV +FL G F +LY
Sbjct: 104 MGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLY 163
Query: 342 SYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQL 521
S+NTLL+ L KFDMV AQNVY ++ S GV+PSLLTFNT+IN+LCKKGKV EA L+F ++
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223
Query: 522 LDYRMVPDVFTYTSFVLGHCRNRNV 596
+ + PD FTYTS +LGHCRNR +
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKL 248
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +3
Query: 333 SLYSYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLF 512
S+ +YN ++ LSK + A+ +M G+QP+ +T+ +LIN LCK A +F
Sbjct: 546 SIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIF 605
Query: 513 YQLLDYRMVPDVFTYTSFVLGHCRNRNV 596
+++ +P+ TYTS + G C+ V
Sbjct: 606 HEMEKKNCLPNAHTYTSLIYGLCQEGKV 633
>ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 227 bits (578), Expect = 1e-57
Identities = 113/203 (55%), Positives = 152/203 (74%), Gaps = 5/203 (2%)
Frame = +3
Query: 3 RVCCLLSHDPQWQKNTELINHLSPKLTPNHVAMILDKNQNTESTLRFFYWV--RHFYKHN 176
++ +LS P+W+ ++EL HLSPKL P+HV IL ++NT+S LRFF+W+ R F+KH+
Sbjct: 53 KISTILS-SPKWEHSSELC-HLSPKLKPHHVVNILQTHKNTDSVLRFFFWISRRKFFKHD 110
Query: 177 IDCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLS---GKKEFEMSLYSY 347
+ CF MLNRL+R RLF PADHVRILMIK CRNE E+ RV +FLS K +F +L S+
Sbjct: 111 MSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSF 170
Query: 348 NTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLD 527
TLLI L KFDMV +A+++Y +ML+ G++PSLLTFNT+IN+LCKKG+V EA+L+ +
Sbjct: 171 TTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFR 230
Query: 528 YRMVPDVFTYTSFVLGHCRNRNV 596
Y P+ FTYTS +LGHCRN N+
Sbjct: 231 YDAYPNAFTYTSLILGHCRNHNL 253
Score = 57.8 bits (138), Expect = 1e-06
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Frame = +3
Query: 261 KGC-RNERELVRVIEFLS--GKKEFEMSLY-------------SYNTLLICLSKFDMVGV 392
+GC N + +I LS GK E + LY +YN L+ L
Sbjct: 336 RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFET 395
Query: 393 AQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLDYRMVPDVFTYTSFVL 572
A ++K MLSHG PS T+N +I C G + +A ++F ++L P+V TY + +
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455
Query: 573 GHCRNRNV 596
G+C+ N+
Sbjct: 456 GYCKQGNL 463
Score = 57.8 bits (138), Expect = 1e-06
Identities = 24/84 (28%), Positives = 51/84 (60%)
Frame = +3
Query: 333 SLYSYNTLLICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLF 512
S +YN ++ SK + + A+N +M+ G+ P+++T+ + I+ LC+ G+ G A +F
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610
Query: 513 YQLLDYRMVPDVFTYTSFVLGHCR 584
+++ P+++TY+S + G C+
Sbjct: 611 HEMEKRNYFPNLYTYSSLIYGLCQ 634
Score = 56.2 bits (134), Expect = 4e-06
Identities = 37/134 (27%), Positives = 70/134 (52%)
Frame = +3
Query: 180 DCFFIMLNRLIRHRLFTPADHVRILMIKGCRNERELVRVIEFLSGKKEFEMSLYSYNTLL 359
D + MLN IR L T + IL KG E +L+ F + + + ++Y +L+
Sbjct: 188 DMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF---RYDAYPNAFTYTSLI 244
Query: 360 ICLSKFDMVGVAQNVYKEMLSHGVQPSLLTFNTLINMLCKKGKVGEAELLFYQLLDYRMV 539
+ + + +A ++ M+ G P+ +T++TLIN LC +G++ EA + +++ +
Sbjct: 245 LGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE 304
Query: 540 PDVFTYTSFVLGHC 581
P V+TYT ++ C
Sbjct: 305 PTVYTYTIPLVSLC 318