BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004684
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35920.3| unnamed protein product [Vitis vinifera]               79   5e-13
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...    79   5e-13
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...    74   9e-12
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...    73   2e-11
gb|AFK41205.1| unknown [Lotus japonicus]                               70   2e-10

>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = -2

Query: 233 EKKKLSCICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFA-DSDSNQKRNFPS 57
           EK  L+CI SYI HL+K+KD+ S +++S K+H IPGILN++FS+ FA DSDS +      
Sbjct: 260 EKTTLACIFSYINHLLKYKDRNSMDASSAKHHKIPGILNQKFSSMFALDSDSRRLTE--- 316

Query: 56  IEKRNFLISYVLVLAL 9
            EK++ LISYVLVL L
Sbjct: 317 -EKKDLLISYVLVLTL 331


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = -2

Query: 233 EKKKLSCICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFA-DSDSNQKRNFPS 57
           EK  L+CI SYI HL+K+KD+ S +++S K+H IPGILN++FS+ FA DSDS +      
Sbjct: 290 EKTTLACIFSYINHLLKYKDRNSMDASSAKHHKIPGILNQKFSSMFALDSDSRRLTE--- 346

Query: 56  IEKRNFLISYVLVLAL 9
            EK++ LISYVLVL L
Sbjct: 347 -EKKDLLISYVLVLTL 361


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 45/75 (60%), Positives = 50/75 (66%)
 Frame = -2

Query: 233 EKKKLSCICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFADSDSNQKRNFPSI 54
           EKK+LSCI SYI HLIKFKDQ S +  S K H IP IL  +FS  FA S+S  KR  P  
Sbjct: 293 EKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSES--KRLPP-- 348

Query: 53  EKRNFLISYVLVLAL 9
           EK + LI YVLVL L
Sbjct: 349 EKISLLICYVLVLTL 363


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
           gi|449480549|ref|XP_004155927.1| PREDICTED:
           uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
 Frame = -2

Query: 236 EEKKKLSCICSYITHLIKFKDQRS-ANSASTKNHYIPGILNRRFSTTFADSDSNQKRNFP 60
           EEKKKL CI SYITHLIK+KDQ S  + +S K H IP +L ++FS+ F  ++S +     
Sbjct: 303 EEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRL---- 358

Query: 59  SIEKRNFLISYVLVLAL 9
           S +K N LIS+VLVL+L
Sbjct: 359 SADKINLLISHVLVLSL 375


>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -2

Query: 233 EKKKLSCICSYITHLIKFKDQRSANS-ASTKNHYIPGILNRRFSTTFADSDSNQKRNFPS 57
           EKKK+SCI SY+ HLIKFKDQR+    +S K+H IP IL  +FS+ F  ++S +  N   
Sbjct: 215 EKKKMSCIFSYLNHLIKFKDQRTMQGVSSAKSHKIPPILRYKFSSMFGATESRRLPN--- 271

Query: 56  IEKRNFLISYVLVLAL 9
            ++ N LI YVLVL L
Sbjct: 272 -DELNLLICYVLVLTL 286