BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003992
         (1538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282957.1| PREDICTED: E3 ubiquitin-protein ligase SIS3 ...   632   e-179
ref|XP_002511411.1| protein binding protein, putative [Ricinus c...   626   e-177
ref|XP_003525499.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-...   618   e-174
ref|XP_003549625.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-...   600   e-169
ref|XP_003608971.1| RING finger protein [Medicago truncatula] gi...   592   e-167

>ref|XP_002282957.1| PREDICTED: E3 ubiquitin-protein ligase SIS3 [Vitis vinifera]
          Length = 381

 Score =  632 bits (1630), Expect = e-179
 Identities = 301/377 (79%), Positives = 319/377 (84%), Gaps = 1/377 (0%)
 Frame = +3

Query: 69   MAIRGIDFKWYDGFFLSMLATSVIIVSINWKRYHLCTYPLHIWIVVDYTAVFVFRLLMFV 248
            MAIRG+DFKWYDGFFLSMLATSVIIV+INWKRY LCTYPLHIWI+VDYT VFVFRLLMFV
Sbjct: 1    MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYDLCTYPLHIWIMVDYTTVFVFRLLMFV 60

Query: 249  DNGLAAGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTVIGTLWFTSARGCLPEE 428
            DNGLAAGMGLD GWQQRYARFCGR           YPFLWAWTVIGTLWFT AR CLPEE
Sbjct: 61   DNGLAAGMGLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARDCLPEE 120

Query: 429  GQKWGFLIWLLFSYCGLVCIACLCTGKWLTRREAHLQRAQQGIPVSEFGVLVDMIRVPDW 608
            GQKWGFLIWLLFSYCGL+CIAC+  GKW +RR+AHL RAQQGIPVSE+GVLVDMIRVPDW
Sbjct: 121  GQKWGFLIWLLFSYCGLLCIACMSMGKWFSRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 609  AFEAAGQEMRGMGQDAAVYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECPICLE 788
            AFEAAGQEMRGMGQDAA YHPGLYLT TQREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181  AFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 789  EFSEGNEVRGLPCAHNFHVECIDQWLRLNIKCPRCRCSVFPNLDLSALSNIRTDSGRSSA 968
            EF  GNEVRGLPCAHNFHVECID+WLRLN+KCPRCRCSVFPNLDLSAL++ R DS RSSA
Sbjct: 241  EFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALTHFRADSERSSA 300

Query: 969  TVMTTTRYVRAQPLGHSYLLRLQGLLRPIRTENFVEDNDTDNALDAAEN-GLAVTQSHAN 1145
            +V+T TRYVR QP    Y+LRLQG LRP+RTEN    ND DNAL+ AEN GL V      
Sbjct: 301  SVVTATRYVRVQPPSQGYMLRLQGFLRPVRTENAGAGNDADNALENAENGGLPVVTDDLT 360

Query: 1146 TAESAPATTSVRVDQSS 1196
              E AP    V V  S+
Sbjct: 361  NTEPAPFDNGVLVHHST 377


>ref|XP_002511411.1| protein binding protein, putative [Ricinus communis]
            gi|223550526|gb|EEF52013.1| protein binding protein,
            putative [Ricinus communis]
          Length = 381

 Score =  626 bits (1614), Expect = e-177
 Identities = 296/377 (78%), Positives = 318/377 (84%), Gaps = 1/377 (0%)
 Frame = +3

Query: 69   MAIRGIDFKWYDGFFLSMLATSVIIVSINWKRYHLCTYPLHIWIVVDYTAVFVFRLLMFV 248
            MAIRG+DFKWYDGFFLSMLATSV+IV+INWKRYH CTYPLHIWIVVDYT VFVFRLLMF+
Sbjct: 1    MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHHCTYPLHIWIVVDYTTVFVFRLLMFI 60

Query: 249  DNGLAAGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTVIGTLWFTSARGCLPEE 428
            DNGLAAGMGLD GWQQRYARFCGR           YPFLWAWT+IGTLWFTSAR CLPEE
Sbjct: 61   DNGLAAGMGLDFGWQQRYARFCGRIAVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120

Query: 429  GQKWGFLIWLLFSYCGLVCIACLCTGKWLTRREAHLQRAQQGIPVSEFGVLVDMIRVPDW 608
            GQKWGFLIWL+FSYCGL+CIAC+C GKWLTRR+AHL RAQQGIP+SE+GVLVDM+RVPDW
Sbjct: 121  GQKWGFLIWLVFSYCGLLCIACMCMGKWLTRRQAHLLRAQQGIPISEYGVLVDMVRVPDW 180

Query: 609  AFEAAGQEMRGMGQDAAVYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECPICLE 788
            AFEAAGQEMRGMGQDAA YHPGLYLT TQREAVEALIQELPKFRLK VPTDCSECPICLE
Sbjct: 181  AFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKTVPTDCSECPICLE 240

Query: 789  EFSEGNEVRGLPCAHNFHVECIDQWLRLNIKCPRCRCSVFPNLDLSALSNIRTDSGRSSA 968
            EF  GNEVRGLPCAHNFHVECID+WLRLN+KCPRCRCSVFPNLDLSALSN+R D  R  A
Sbjct: 241  EFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADPERPPA 300

Query: 969  TVMTTTRYVRAQPLGHSYLLRLQGLLRPIRTENFVEDNDTDNALDAAENGLAVTQS-HAN 1145
              +TT RYVR QP   SYLLRLQGLLRPIRTE+    +D D  L+A E+G  V  +  A 
Sbjct: 301  ADVTTNRYVRTQPSSQSYLLRLQGLLRPIRTEDAGSSSDVDVDLEAVEHGREVVATREAM 360

Query: 1146 TAESAPATTSVRVDQSS 1196
              E      S+ V QSS
Sbjct: 361  VMEPVSLVGSMLVGQSS 377


>ref|XP_003525499.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]
          Length = 382

 Score =  618 bits (1593), Expect = e-174
 Identities = 298/382 (78%), Positives = 318/382 (83%), Gaps = 7/382 (1%)
 Frame = +3

Query: 69   MAIRGIDFKWYDGFFLSMLATSVIIVSINWKRYHLCTYPLHIWIVVDYTAVFVFRLLMFV 248
            MAIRG+DFKWYDGFFLSMLATSV+IV+INWKRYH CTYPLHIWIVVDYT VFVFRLLMFV
Sbjct: 1    MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFV 60

Query: 249  DNGLAAGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTVIGTLWFTSARGCLPEE 428
            DNGLAAGMGLD GWQQRYARFCGR           YPFLWAWTVIGTLWF+SA+ CLPE 
Sbjct: 61   DNGLAAGMGLDFGWQQRYARFCGRVVVFSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEV 120

Query: 429  GQKWGFLIWLLFSYCGLVCIACLCTGKWLTRREAHLQRAQQGIPVSEFGVLVDMIRVPDW 608
            G KWGFLIWLLFSYCGL+CIAC+  GKWLTRR+AHL RAQQGIPVSE+GVLVDMIRVPDW
Sbjct: 121  GTKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 609  AFEAAGQEMRGMGQDAAVYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECPICLE 788
            AFEAAGQE RGMGQDAA YHPGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181  AFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 789  EFSEGNEVRGLPCAHNFHVECIDQWLRLNIKCPRCRCSVFPNLDLSALSNIRTDSGRSSA 968
            EF  GNEVRGLPCAHNFHVECID+WLRLN+KCPRCRCSVFPNLDLSALSN+R +   SSA
Sbjct: 241  EFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPEESSA 300

Query: 969  TVMTTTRYVRAQPLGHSYLLRLQGLLRPIRTENFVEDNDTDNALDAAENGLA--VTQS-- 1136
            +V+TTTRYVR QP   SY LRLQGLLRP+  E      D DN L+ AENG    VTQ+  
Sbjct: 301  SVVTTTRYVRGQPSSQSYRLRLQGLLRPVGAEIAGPVGDIDNVLENAENGSVSIVTQNAS 360

Query: 1137 ---HANTAESAPATTSVRVDQS 1193
               HA++ E  P T S    QS
Sbjct: 361  SGDHASSVECMPVTVSHSSAQS 382


>ref|XP_003549625.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]
          Length = 383

 Score =  600 bits (1546), Expect = e-169
 Identities = 285/374 (76%), Positives = 314/374 (83%), Gaps = 2/374 (0%)
 Frame = +3

Query: 69   MAIRGIDFKWYDGFFLSMLATSVIIVSINWKRYHLCTYPLHIWIVVDYTAVFVFRLLMFV 248
            MAIRG+DFKWYDGFFL MLATSV+IV+INWKRYH CTYPLHIWIVVDYT VFVFR+LMFV
Sbjct: 1    MAIRGVDFKWYDGFFLFMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRVLMFV 60

Query: 249  DNGLAAGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTVIGTLWFTSARGCLPEE 428
            DNGL+AGMGLD GWQQRYARFCGR           YPFLWAWTVIGTLWF+SA+ CLPE 
Sbjct: 61   DNGLSAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEV 120

Query: 429  GQKWGFLIWLLFSYCGLVCIACLCTGKWLTRREAHLQRAQQGIPVSEFGVLVDMIRVPDW 608
            G+KWGFLIWLLFSYCGL CIAC+  GKWLTRR+AHL RAQQGIPVSE+GVLVDMIRVPDW
Sbjct: 121  GKKWGFLIWLLFSYCGLFCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 609  AFEAAGQEMRGMGQDAAVYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECPICLE 788
            AFEAAGQE RGMGQDAA YHPGLYLT  QREAVEALI ELPKFRLKAVPTDCSECPICLE
Sbjct: 181  AFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALILELPKFRLKAVPTDCSECPICLE 240

Query: 789  EFSEGNEVRGLPCAHNFHVECIDQWLRLNIKCPRCRCSVFPNLDLSALSNIRTDSGRSSA 968
            EF  GNEVRGLPCAHNFHVECID+WLRLN+KCPRCRCSVFPNLDLSALS++R +  + SA
Sbjct: 241  EFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLRAEPEQFSA 300

Query: 969  TVMTTTRYVRAQPLGHSYLLRLQGLLRPIRTENFVEDNDTDNALDAAENGLA--VTQSHA 1142
            +V+TT RYVR QP   SY LRLQGLL P+R E      D DNAL  A+NG+   VTQ+ +
Sbjct: 301  SVVTTARYVRGQPSSLSYRLRLQGLLCPVRAEIAGPVGDIDNALKNAQNGVVSIVTQNAS 360

Query: 1143 NTAESAPATTSVRV 1184
            ++ + A +   + V
Sbjct: 361  SSGDQASSVECMPV 374


>ref|XP_003608971.1| RING finger protein [Medicago truncatula] gi|355510026|gb|AES91168.1|
            RING finger protein [Medicago truncatula]
          Length = 365

 Score =  592 bits (1527), Expect = e-167
 Identities = 281/361 (77%), Positives = 303/361 (83%)
 Frame = +3

Query: 120  MLATSVIIVSINWKRYHLCTYPLHIWIVVDYTAVFVFRLLMFVDNGLAAGMGLDLGWQQR 299
            MLATSV+IV+INWKRYH CTYPLHIWIVVDYTAVFVFRLLMFVDNG AAGMGLD GWQQR
Sbjct: 1    MLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQR 60

Query: 300  YARFCGRXXXXXXXXXXXYPFLWAWTVIGTLWFTSARGCLPEEGQKWGFLIWLLFSYCGL 479
            YARFCGR           YPFLWAWT+IGT+WF+SA+ CLPEEGQKWGFLIWLLFSYCGL
Sbjct: 61   YARFCGRVVVLSILGLLLYPFLWAWTIIGTMWFSSAKSCLPEEGQKWGFLIWLLFSYCGL 120

Query: 480  VCIACLCTGKWLTRREAHLQRAQQGIPVSEFGVLVDMIRVPDWAFEAAGQEMRGMGQDAA 659
            +CIAC+  GKWLTRR+AHL RAQQGIP+SE+G+LVDMIRVPDWAFEAAGQE RGMGQD A
Sbjct: 121  LCIACMSVGKWLTRRQAHLVRAQQGIPLSEYGILVDMIRVPDWAFEAAGQETRGMGQDTA 180

Query: 660  VYHPGLYLTTTQREAVEALIQELPKFRLKAVPTDCSECPICLEEFSEGNEVRGLPCAHNF 839
             YHPGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLEEF  GNEVRGLPCAHNF
Sbjct: 181  SYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNF 240

Query: 840  HVECIDQWLRLNIKCPRCRCSVFPNLDLSALSNIRTDSGRSSATVMTTTRYVRAQPLGHS 1019
            HVECID+WLRLN+KCPRCRCSVFPNLDLSALSN+R DS RSS +V+TTTRYVR QP   S
Sbjct: 241  HVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSDSVVTTTRYVRGQPSSQS 300

Query: 1020 YLLRLQGLLRPIRTENFVEDNDTDNALDAAENGLAVTQSHANTAESAPATTSVRVDQSSR 1199
            YLLRLQGLLRP+RTE      DTDNAL  AENG+A   +   T +S      +   QS  
Sbjct: 301  YLLRLQGLLRPVRTEIAGPVGDTDNALQNAENGVAPVLTTKCTKQSPGLVGGMHACQSFF 360

Query: 1200 C 1202
            C
Sbjct: 361  C 361