BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003920
         (1035 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    83   1e-13
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    69   1e-09
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    65   3e-08
ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [S...    65   4e-08
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    64   5e-08

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 83.2 bits (204), Expect = 1e-13
 Identities = 42/136 (30%), Positives = 77/136 (56%)
 Frame = -2

Query: 980 IWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYEWIR 801
           IWK      I++F+WKL    L  GD L +R ++    C  C +E ET++HLFF   + +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 800 TVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCSTDKDQSLAGIHIAFLLQQIWKTRNELK 621
            VW +S +  +  +   +T   +M+L LS SC  ++   L  + I ++L ++WK+RN+L 
Sbjct: 78  QVWRASGIPHQELRTTGITMETKMELLLS-SCLANRQPQLFNLAI-WILWRLWKSRNQLV 135

Query: 620 FENRMANWERMIRESK 573
           F+ +  +W+  ++ ++
Sbjct: 136 FQQKSISWQNTLQRAR 151


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
 Frame = -2

Query: 986  KHIWKAPLPAYIQNFIWKLYMN-ILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYE 810
            K IWK  +P  I+ FIW    N IL   ++L +   KGD  C +C K +ET +HLFF   
Sbjct: 842  KKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNKCQFCDK-VETVQHLFFDCP 900

Query: 809  WIRTVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCSTDK-DQSLAGIHIAFLLQQIWKTR 633
              R +W      + +          R DL  SW  S DK  ++L  + IA +L  IWK R
Sbjct: 901  LARLIWNIIACALNVKP-----VLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCR 955

Query: 632  NELKFENRMAN 600
            N+  FE ++ N
Sbjct: 956  NKACFERKLPN 966


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
            gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
            thaliana] gi|7269807|emb|CAB79667.1| putative protein
            [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
            putative reverse transcriptase/RNA-dependent DNA
            polymerase [Arabidopsis thaliana]
            gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
            [Arabidopsis thaliana]
          Length = 575

 Score = 65.1 bits (157), Expect = 3e-08
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
 Frame = -2

Query: 1007 SCNPLTLKHIWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEH 828
            S NP+  K IWK+     IQ+F+WK   N LP+   LA R +  + +C  C    ET  H
Sbjct: 249  SLNPIYQK-IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNH 307

Query: 827  LFFTYEWIRTVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCST---DKDQSLAGIHIAFL 657
            L F   + R  W  S + + +  +      + + + L W  +    +     A   + +L
Sbjct: 308  LLFKCTFARLTWAISSIPIPLGGEW----ADSIYVNLYWVFNLGNGNPQWEKASQLVPWL 363

Query: 656  LQQIWKTRNELKFENRMANWERMIRESK 573
            L ++WK RNEL F  R  N + ++R ++
Sbjct: 364  LWRLWKNRNELVFRGREFNAQEVLRRAE 391


>ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [Sorghum bicolor]
            gi|241946107|gb|EES19252.1| hypothetical protein
            SORBIDRAFT_09g007400 [Sorghum bicolor]
          Length = 835

 Score = 64.7 bits (156), Expect = 4e-08
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
 Frame = -2

Query: 1028 DEVGQSSSCNPLTLKHIWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLK 849
            DE G S S        IWK+ +PA I+ F+W L  N++   D L KR+  GD +C +C +
Sbjct: 648  DESGPSHS-------KIWKSKIPAKIKIFLWLLLNNVILTKDNLIKRKWIGDPTCYFCDQ 700

Query: 848  EIETAEHLFFTYEWIRTVWFSSQVRMRIHKDQKLTPRERMDLCLSW-SCSTDKDQSLAGI 672
            + E+  HLFF     + VW      +  H          ++ C +W  C     +    +
Sbjct: 701  D-ESVSHLFFHCSTAKAVW-----AIVAHCIGANNIPNTLNQCWTWCECWLPAGKQFHTL 754

Query: 671  HIAFLLQQIWKTRNELKFENR 609
             IA +   IWKTRN+  FE R
Sbjct: 755  GIAAICWAIWKTRNKCCFEGR 775


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 64.3 bits (155), Expect = 5e-08
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
 Frame = -2

Query: 986 KHIWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYEW 807
           K IWK PLP  ++NF+WKL  NI+P    L +R +  D  CP C    E++ H F     
Sbjct: 261 KLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPM 320

Query: 806 IRTVWFSSQVRMRIHKDQKLTPRERMDL---CLSWSCSTDKDQSLAGIHIAFLLQQIWKT 636
              VWF+S +  +        P  + DL    LSW       + LA       L +IW  
Sbjct: 321 TLQVWFASPLGFQ--------PPPQTDLNAWLLSW---LSAKEPLAVQLFCVCLWKIWFF 369

Query: 635 RNELKFENRMANWERMIRES 576
           RN++ F N++    RM+  S
Sbjct: 370 RNQVIF-NQVVFEPRMVAAS 388