BLASTX nr result
ID: Coptis24_contig00003917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00003917
(1401 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001060793.1| Os08g0106900 [Oryza sativa Japonica Group] g... 349 9e-94
ref|XP_003571030.1| PREDICTED: uncharacterized protein LOC100837... 340 4e-91
emb|CAD41055.2| OSJNBa0084K11.21 [Oryza sativa Japonica Group] g... 338 2e-90
ref|NP_001061974.2| Os08g0459400 [Oryza sativa Japonica Group] g... 337 6e-90
ref|NP_001149744.1| retrotransposon protein [Zea mays] gi|195630... 332 1e-88
>ref|NP_001060793.1| Os08g0106900 [Oryza sativa Japonica Group]
gi|113622762|dbj|BAF22707.1| Os08g0106900 [Oryza sativa
Japonica Group]
Length = 629
Score = 349 bits (896), Expect = 9e-94
Identities = 179/309 (57%), Positives = 227/309 (73%), Gaps = 1/309 (0%)
Frame = -3
Query: 985 PYVNRDIDRKLYLDGII-NDDSECYDLLRMSKESFRKLVVLFREKNLLRDSRNTKVEEQV 809
P RD R YLD I +D+ C D+LR+ K+SF + LFR++ LL D+ + +VEEQV
Sbjct: 23 PMDERDRMRFEYLDTKIWRNDTTCIDMLRLRKDSFFRFCKLFRDRGLLEDTIHMRVEEQV 82
Query: 808 AEFLHTIGHNVKTRVIKHNFLRSGETTNRYFHIVLKAILSLYKDLVVEPTTDMETPPIIR 629
A FL+T+GHN++ R+++ NF RSGET +RYF+ VL AI L +L+ P+ D TP I
Sbjct: 83 AMFLNTVGHNLRNRLVRTNFDRSGETVSRYFNKVLHAIGELRDELIRPPSLD--TPNKIA 140
Query: 628 CNEVRFWPWFKDCIGAIDGTHIRVKVPEGIRNRFRGRKEKPTQNVLAAVSFDLRFTYVLA 449
N R+ P+FKDCIGAIDGTHIR V + + + FRGRK TQNV+AAV FDLRFTYVL
Sbjct: 141 GNP-RWDPYFKDCIGAIDGTHIRASVRKNMESSFRGRKSHATQNVMAAVDFDLRFTYVLV 199
Query: 448 GWEGSAHGARVLEDALTRPNGLKVPEGKYYLVDAGYPNRMGFLAPFRGVRYHLKEWSEHE 269
GWEG+AH A VL DAL R NGL++P+GKYYLVDAGY + GFL PFR VRYHL EW +
Sbjct: 200 GWEGTAHDAVVLRDALERENGLRIPQGKYYLVDAGYGAKQGFLPPFRAVRYHLNEWGNNP 259
Query: 268 PENEKELFNVRHSSLRNSVERAFGILKKRWKILDDSESFFSFDTQVDVVLACCILHNYII 89
+NEKELFN+RHSSLR +VERAFG LK+R+KILDD+ FF F TQVD+V ACCI+HN++I
Sbjct: 260 VQNEKELFNLRHSSLRITVERAFGSLKRRFKILDDATPFFPFPTQVDIVAACCIIHNWVI 319
Query: 88 GVAPNDLFL 62
++LF+
Sbjct: 320 NDGIDELFI 328
>ref|XP_003571030.1| PREDICTED: uncharacterized protein LOC100837391 [Brachypodium
distachyon]
Length = 664
Score = 340 bits (873), Expect = 4e-91
Identities = 173/311 (55%), Positives = 228/311 (73%), Gaps = 1/311 (0%)
Frame = -3
Query: 985 PYVNRDIDRKLYLDGII-NDDSECYDLLRMSKESFRKLVVLFREKNLLRDSRNTKVEEQV 809
P +RD R YLD I +D+ C ++LR+ +E F + L R++ LL+D+ + VE+QV
Sbjct: 41 PMFDRDRMRIEYLDNKIWKNDTICINMLRLRREPFFRFCKLLRDRQLLQDTIHMCVEQQV 100
Query: 808 AEFLHTIGHNVKTRVIKHNFLRSGETTNRYFHIVLKAILSLYKDLVVEPTTDMETPPIIR 629
A FL+T+GHN++ R++ NF RSGET +RYF++VL AI L +L+ +P+ METP I+
Sbjct: 101 AMFLNTVGHNLRNRLVATNFNRSGETVSRYFNLVLHAIGELRNELIRKPS--METPTKIQ 158
Query: 628 CNEVRFWPWFKDCIGAIDGTHIRVKVPEGIRNRFRGRKEKPTQNVLAAVSFDLRFTYVLA 449
N R P+F+DC+GAIDGTHIR V + + F GRK +QNV+AAV FDLRFTYVLA
Sbjct: 159 GNYRRD-PYFQDCVGAIDGTHIRASVTKAMEPAFCGRKSHASQNVMAAVDFDLRFTYVLA 217
Query: 448 GWEGSAHGARVLEDALTRPNGLKVPEGKYYLVDAGYPNRMGFLAPFRGVRYHLKEWSEHE 269
GWEG+AH A VL DAL RPNGL+VP+GKYYLVDAGY + GFL PFRGVRYHL EW +
Sbjct: 218 GWEGAAHDALVLRDALERPNGLRVPQGKYYLVDAGYGAKPGFLPPFRGVRYHLNEWGNNP 277
Query: 268 PENEKELFNVRHSSLRNSVERAFGILKKRWKILDDSESFFSFDTQVDVVLACCILHNYII 89
+NE ELFN+RHSSLR +VERAFG LK+R+KILDD+ FF F QVD+V+ACCI+HN+++
Sbjct: 278 VQNENELFNLRHSSLRVTVERAFGSLKRRFKILDDATPFFRFPAQVDIVVACCIIHNWVL 337
Query: 88 GVAPNDLFLSE 56
G ++ + E
Sbjct: 338 GDEIDEYIIPE 348
>emb|CAD41055.2| OSJNBa0084K11.21 [Oryza sativa Japonica Group]
gi|38345926|emb|CAE01919.2| OSJNBb0078D11.1 [Oryza
sativa Japonica Group]
Length = 377
Score = 338 bits (868), Expect = 2e-90
Identities = 178/324 (54%), Positives = 229/324 (70%), Gaps = 12/324 (3%)
Frame = -3
Query: 985 PYVNRDIDRKLYLDGIIN-DDSECYDLLRMSKESFRKLVVLFREKNLLRDSRNTKVEEQV 809
P V RD R YL+ I +D+ C ++LR+ + SF + LFR++ LL D+ + +EEQV
Sbjct: 23 PMVERDRKRIEYLETKIWWNDTTCINMLRLRRASFFRFCKLFRDRGLLEDTIHMCIEEQV 82
Query: 808 AEFLHTIGHNVKTRVIKHNFLRSGETTNRYFHIVLKAILSLYKDLVVEPTTDMETPPIIR 629
A FLHT+GHN++ R+++ NF RS ET +RYF+ VL AI L +L+ P+ D TP I
Sbjct: 83 AMFLHTVGHNLRNRLVRTNFDRSRETVSRYFNKVLHAIGELRDELIRPPSLD--TPTKIA 140
Query: 628 CNEVRFWPWFKDCIGAIDGTHIRVKVPEGIRNRFRGRKEKPTQNVLAAVSFDLRFTYVLA 449
N R+ P+FKDCIGAIDGTHIR V + + + FRGRK TQNV+AAV FDLRFTYVLA
Sbjct: 141 GNP-RWDPYFKDCIGAIDGTHIRASVRKNVESSFRGRKSHATQNVMAAVDFDLRFTYVLA 199
Query: 448 GWEGSAHGARVLEDALTRPNGLKVPEG-----KYYLVDAGYPNRMGFLAPFRGVRYHLKE 284
GWEG+AH A VL DAL R NGL+VP+G KYYLVDAGY + GFL PFR VRYHL E
Sbjct: 200 GWEGTAHDAVVLRDALERENGLRVPQGNRLQGKYYLVDAGYGAKQGFLPPFRAVRYHLNE 259
Query: 283 WSEHEPENEKELFNVRHSSLRNSVERAFGILKKRWKILDDSESFFSFDTQVDVVLACCIL 104
W + +NEKELFN+RHSSLR +VERAFG LK+R+K+LDD+ FF F TQVD+V+ACCI+
Sbjct: 260 WGNNPVQNEKELFNLRHSSLRVTVERAFGSLKRRFKVLDDATPFFPFQTQVDIVVACCII 319
Query: 103 HNYIIG------VAPNDLFLSELD 50
HN+++ +AP D ++D
Sbjct: 320 HNWVVNDGIDELIAPPDWSSEDID 343
>ref|NP_001061974.2| Os08g0459400 [Oryza sativa Japonica Group]
gi|255678502|dbj|BAF23888.2| Os08g0459400 [Oryza sativa
Japonica Group]
Length = 705
Score = 337 bits (863), Expect = 6e-90
Identities = 179/317 (56%), Positives = 222/317 (70%), Gaps = 4/317 (1%)
Frame = -3
Query: 994 PRK--PYVNRDIDRKLYLDGIIN-DDSECYDLLRMSKESFRKLVVLFREKNLLRDSRNTK 824
PRK P V+RD+ RK LD + N D+ C LRM KE F KL R+ LL D+ +
Sbjct: 72 PRKYGPLVDRDLVRKTRLDDLYNGSDTTCISQLRMRKEVFWKLASKLRDNGLLCDTIHVS 131
Query: 823 VEEQVAEFLHTIGHNVKTRVIKHNFLRSGETTNRYFHIVLKAILSLYKDLVVEPTTDMET 644
VEEQ+A FLHT+GHN++ RVI +RS ET +RYF+ VLKA+ L KD++ +ET
Sbjct: 132 VEEQLAMFLHTVGHNLRNRVIGFYVIRSSETVSRYFNEVLKALCCLAKDMI--QIRSIET 189
Query: 643 PPIIRCNEVRFWPWFKDCIGAIDGTHIRVKVPEGIRNRFRGRKEKPTQNVLAAVSFDLRF 464
I N RF+P+F+DCIGA+DGTHI VPE I NRFRGRK PTQNVLAAV FDLRF
Sbjct: 190 HSKIVSNPGRFYPYFEDCIGALDGTHIPAFVPENIVNRFRGRKSYPTQNVLAAVDFDLRF 249
Query: 463 TYVLAGWEGSAHGARVLEDALTRPNGLKVPEGKYYLVDAGYPNRMGFLAPFRGVRYHLKE 284
TYVL GWEGSAH + VL+ AL R +G+++PEGKYYL DAGY R G L PFRGVRYHLKE
Sbjct: 250 TYVLVGWEGSAHDSVVLKAALRRSSGIQIPEGKYYLADAGYAARPGILPPFRGVRYHLKE 309
Query: 283 W-SEHEPENEKELFNVRHSSLRNSVERAFGILKKRWKILDDSESFFSFDTQVDVVLACCI 107
+ PE +ELFN+RHSSLR SVERAFG LK R+K+L S+ FF + QV +V+ACC+
Sbjct: 310 YEGGKSPETPQELFNLRHSSLRTSVERAFGTLKNRFKVL-ASKPFFPYKVQVKIVIACCV 368
Query: 106 LHNYIIGVAPNDLFLSE 56
LHN+I+ P+++ E
Sbjct: 369 LHNWILDNGPDNIIYDE 385
>ref|NP_001149744.1| retrotransposon protein [Zea mays] gi|195630667|gb|ACG36640.1|
retrotransposon protein [Zea mays]
Length = 401
Score = 332 bits (851), Expect = 1e-88
Identities = 175/311 (56%), Positives = 224/311 (72%), Gaps = 1/311 (0%)
Frame = -3
Query: 985 PYVNRDIDRKLYLDGII-NDDSECYDLLRMSKESFRKLVVLFREKNLLRDSRNTKVEEQV 809
P RD R YL+ I D+ C ++LR+S+ SF + FR++ LL D+ + VEEQV
Sbjct: 43 PMEERDRMRLDYLNTKIWMSDTTCVNMLRLSRSSFFRFCKGFRDRGLLEDTIHMCVEEQV 102
Query: 808 AEFLHTIGHNVKTRVIKHNFLRSGETTNRYFHIVLKAILSLYKDLVVEPTTDMETPPIIR 629
A FL+T+GHN++ R++ N+ RSGET +RYF+ VL+AI L +L+ P+ +ETP I
Sbjct: 103 AMFLNTVGHNLRNRLVGTNYGRSGETVSRYFNKVLRAIGELRAELIRPPS--LETPSKIA 160
Query: 628 CNEVRFWPWFKDCIGAIDGTHIRVKVPEGIRNRFRGRKEKPTQNVLAAVSFDLRFTYVLA 449
N R+ P+FKDCIGAIDGTHIR V + FRGRK +QNV+AAV FDLRFTYVLA
Sbjct: 161 GNP-RWDPYFKDCIGAIDGTHIRTLVSIDMEPSFRGRKSYASQNVMAAVDFDLRFTYVLA 219
Query: 448 GWEGSAHGARVLEDALTRPNGLKVPEGKYYLVDAGYPNRMGFLAPFRGVRYHLKEWSEHE 269
GWEGSAH A VL DAL R NGL+VP+GK+YLVDAGY + GFL PFR VR HL EW +
Sbjct: 220 GWEGSAHDALVLRDALERENGLRVPQGKFYLVDAGYGAKPGFLPPFRAVRCHLNEWGNNP 279
Query: 268 PENEKELFNVRHSSLRNSVERAFGILKKRWKILDDSESFFSFDTQVDVVLACCILHNYII 89
+NEKELFN+RHSSLR +VERAFG LK+R+KILDD+ FF F TQVD+V+ACCI+HN++I
Sbjct: 280 VQNEKELFNLRHSSLRVTVERAFGSLKRRFKILDDATPFFPFSTQVDIVVACCIIHNWVI 339
Query: 88 GVAPNDLFLSE 56
++L + E
Sbjct: 340 QDGGDELIIEE 350