BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00003914
         (560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545227.1| PREDICTED: RING-H2 finger protein ATL66-like...   110   2e-22
ref|XP_003518438.1| PREDICTED: RING-H2 finger protein ATL66-like...   102   4e-20
ref|NP_187722.1| RING-H2 finger protein ATL66 [Arabidopsis thali...   102   5e-20
ref|XP_003616665.1| RING finger protein [Medicago truncatula] gi...    98   1e-18
ref|XP_002312167.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18

>ref|XP_003545227.1| PREDICTED: RING-H2 finger protein ATL66-like [Glycine max]
          Length = 221

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/82 (60%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
 Frame = -1

Query: 530 VSPCRSRGLDSVVIDKLPILLH-RCSLDEEAQCSICLSAFQDQEKVKILPNCNHSYHPEC 354
           V P ++ GLDS  I +LPI+LH RC+   EA+C ICL AF D EK+K+LP C+HS+H EC
Sbjct: 69  VPPPQNTGLDSAAIKRLPIVLHPRCNRVAEAECCICLGAFADGEKLKVLPGCDHSFHCEC 128

Query: 353 VDKWLKTQSNCPLCRASLRVNS 288
           VDKWL   SNCPLCRASL+++S
Sbjct: 129 VDKWLTNHSNCPLCRASLKLDS 150


>ref|XP_003518438.1| PREDICTED: RING-H2 finger protein ATL66-like [Glycine max]
          Length = 173

 Score =  102 bits (254), Expect = 4e-20
 Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
 Frame = -1

Query: 530 VSPCRSRGLDSVVIDKLPILLH---RCSLDEEAQCSICLSAFQDQEKVKILPNCNHSYHP 360
           +SP ++ GLD+  I +LPI+LH     +  EE +C ICL  F D EK+K+LP C+HS+H 
Sbjct: 72  LSPPQNSGLDAEAIKRLPIVLHPRRNLAAAEETECCICLGVFADGEKLKVLPGCDHSFHC 131

Query: 359 ECVDKWLKTQSNCPLCRASLRVNS 288
           ECVDKWL   SNCPLCRASL+++S
Sbjct: 132 ECVDKWLANHSNCPLCRASLKLDS 155


>ref|NP_187722.1| RING-H2 finger protein ATL66 [Arabidopsis thaliana]
           gi|68565339|sp|Q9SRM0.1|ATL66_ARATH RecName:
           Full=RING-H2 finger protein ATL66
           gi|6016703|gb|AAF01530.1|AC009991_26 hypothetical
           protein [Arabidopsis thaliana]
           gi|12321864|gb|AAG50960.1|AC073395_2 RING zinc finger
           protein; 17145-17621 [Arabidopsis thaliana]
           gi|182623796|gb|ACB88837.1| At3g11110 [Arabidopsis
           thaliana] gi|332641482|gb|AEE75003.1| RING-H2 finger
           protein ATL66 [Arabidopsis thaliana]
          Length = 158

 Score =  102 bits (253), Expect = 5e-20
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
 Frame = -1

Query: 521 CRSRGLDSVVIDKLPILL---HRCSLDEEAQCSICLSAFQDQEKVKILPNCNHSYHPECV 351
           CRS GLD   I  LP++L    R   +EE +C ICL  F++ EK+K+LP C+H YH ECV
Sbjct: 76  CRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECV 135

Query: 350 DKWLKTQSNCPLCRASLRVNS 288
           D+WLKT+S+CPLCR S+RV+S
Sbjct: 136 DRWLKTESSCPLCRVSIRVDS 156


>ref|XP_003616665.1| RING finger protein [Medicago truncatula]
           gi|355518000|gb|AES99623.1| RING finger protein
           [Medicago truncatula]
          Length = 170

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 45/91 (49%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
 Frame = -1

Query: 551 ADAEAGGVSPCRSRGLDSVVIDKLPILLHRCSLD----EEAQCSICLSAFQDQEKVKILP 384
           A +     S  +S GL++  I KLPI+LH+ +      EE +C ICLS F+D EKVK+LP
Sbjct: 61  APSHTSTFSSSQSEGLNADAIKKLPIILHQSNTSNHALEETECCICLSTFRDGEKVKVLP 120

Query: 383 NCNHSYHPECVDKWLKTQSNCPLCRASLRVN 291
           +C+H +H ECVD WL   S+CPLCRASL+++
Sbjct: 121 SCDHYFHCECVDAWLVNHSSCPLCRASLKID 151


>ref|XP_002312167.1| predicted protein [Populus trichocarpa] gi|222851987|gb|EEE89534.1|
           predicted protein [Populus trichocarpa]
          Length = 164

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 7/84 (8%)
 Frame = -1

Query: 512 RGLDSVVIDKLPILLHRCSLDE-------EAQCSICLSAFQDQEKVKILPNCNHSYHPEC 354
           RGL+S +I  LPI LH+ +L         E++C ICL  F+D +++K+LP C H +H +C
Sbjct: 75  RGLESTIIKALPITLHKSNLGTSNNGTAVESECCICLGVFEDGDRLKVLPQCQHCFHCDC 134

Query: 353 VDKWLKTQSNCPLCRASLRVNSPV 282
           VDKWL TQS+CPLCRAS+R  S V
Sbjct: 135 VDKWLVTQSSCPLCRASIRAESAV 158